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  1. Article ; Online: Rhynchosporium commune: a persistent threat to barley cultivation.

    Avrova, Anna / Knogge, Wolfgang

    Molecular plant pathology

    2012  Volume 13, Issue 9, Page(s) 986–997

    Abstract: Rhynchosporium commune is a haploid fungus causing scald or leaf blotch on barley, other Hordeum spp. and Bromus diandrus.: Taxonomy: Rhynchosporium commune is an anamorphic Ascomycete closely related to the teleomorph Helotiales genera Oculimacula ... ...

    Abstract Rhynchosporium commune is a haploid fungus causing scald or leaf blotch on barley, other Hordeum spp. and Bromus diandrus.
    Taxonomy: Rhynchosporium commune is an anamorphic Ascomycete closely related to the teleomorph Helotiales genera Oculimacula and Pyrenopeziza.
    Disease symptoms: Rhynchosporium commune causes scald-like lesions on leaves, leaf sheaths and ears. Early symptoms are generally pale grey oval lesions. With time, the lesions acquire a dark brown margin with the centre of the lesion remaining pale green or pale brown. Lesions often merge to form large areas around which leaf yellowing is common. Infection frequently occurs in the leaf axil, which can lead to chlorosis and eventual death of the leaf.
    Life cycle: Rhynchosporium commune is seed borne, but the importance of this phase of the disease is not fully understood. Debris from previous crops and volunteers, infected from the stubble from previous crops, are considered to be the most important sources of the disease. Autumn-sown crops can become infected very soon after sowing. Secondary spread of disease occurs mainly through splash dispersal of conidia from infected leaves. Rainfall at the stem extension growth stage is the major environmental factor in epidemic development. DETECTION AND QUANTIFICATION: Rhynchosporium commune produces unique beak-shaped, one-septate spores both on leaves and in culture. The development of a specific polymerase chain reaction (PCR) and, more recently, quantitative PCR (qPCR) has allowed the identification of asymptomatic infection in seeds and during the growing season.
    Disease control: The main measure for the control of R. commune is the use of fungicides with different modes of action, in combination with the use of resistant cultivars. However, this is constantly under review because of the ability of the pathogen to adapt to host plant resistance and to develop fungicide resistance.
    MeSH term(s) Agriculture ; Ascomycota/classification ; Ascomycota/physiology ; Hordeum/growth & development ; Hordeum/immunology ; Hordeum/microbiology ; Host Specificity/immunology ; Host-Pathogen Interactions/genetics ; Plant Diseases/immunology ; Plant Diseases/microbiology ; Plant Diseases/prevention & control ; Plant Diseases/statistics & numerical data
    Language English
    Publishing date 2012-06-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2020755-4
    ISSN 1364-3703 ; 1364-3703
    ISSN (online) 1364-3703
    ISSN 1364-3703
    DOI 10.1111/j.1364-3703.2012.00811.x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Deciphering Molecular Host-Pathogen Interactions During

    Lemcke, René / Sjökvist, Elisabet / Visentin, Stefano / Kamble, Manoj / James, Euan K / Hjørtshøj, Rasmus / Wright, Kathryn M / Avrova, Anna / Newton, Adrian C / Havis, Neil D / Radutoiu, Simona / Lyngkjær, Michael F

    Frontiers in plant science

    2021  Volume 12, Page(s) 747661

    Abstract: Ramularia collo- ... ...

    Abstract Ramularia collo-cygni
    Language English
    Publishing date 2021-10-22
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2021.747661
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans?

    Whisson, Stephen / Vetukuri, Ramesh / Avrova, Anna / Dixelius, Christina

    Mobile genetic elements

    2012  Volume 2, Issue 2, Page(s) 110–114

    Abstract: Transposable elements are ubiquitous residents in eukaryotic genomes. Often considered to be genomic parasites, they can lead to dramatic changes in genome organization, gene expression, and gene evolution. The oomycete plant pathogen Phytophthora ... ...

    Abstract Transposable elements are ubiquitous residents in eukaryotic genomes. Often considered to be genomic parasites, they can lead to dramatic changes in genome organization, gene expression, and gene evolution. The oomycete plant pathogen Phytophthora infestans has evolved a genome organization where core biology genes are predominantly located in genome regions that have relatively few resident transposons. In contrast, disease effector-encoding genes are most frequently located in rapidly evolving genomic regions that are rich in transposons. P. infestans, as a eukaryote, likely uses RNA silencing to minimize the activity of transposons. We have shown that fusion of a short interspersed element (SINE) to an effector gene in P. infestans leads to the silencing of both the introduced fusion and endogenous homologous sequences. This is also likely to occur naturally in the genome of P. infestans, as transcriptional inactivation of effectors is known to occur, and over half of the translocated "RXLR class" of effectors are located within 2 kb of transposon sequences in the P. infestans genome. In this commentary, we review the diverse transposon inventory of P. infestans, its control by RNA silencing, and consequences for expression modulation of nearby effector genes in this economically important plant pathogen.
    Language English
    Publishing date 2012-07-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2682444-9
    ISSN 2159-256X ; 2159-2543
    ISSN (online) 2159-256X
    ISSN 2159-2543
    DOI 10.4161/mge.20265
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4

    Looseley, Mark E / Griffe, Lucie L / Büttner, Bianca / Wright, Kathryn M / Bayer, Micha M / Coulter, Max / Thauvin, Jean-Noël / Middlefell-Williams, Jill / Maluk, Marta / Okpo, Aleksandra / Kettles, Nicola / Werner, Peter / Byrne, Ed / Avrova, Anna

    Theoretical and applied genetics. 2020 Apr., v. 133, no. 4

    2020  

    Abstract: KEY MESSAGE: Diagnostic markers for Rrs1Rₕ₄ have been identified by testing for associations between SNPs within the Rrs1 interval in 150 barley genotypes and their resistance to Rhynchosporium commune isolates recognised by lines containing Rrs1. ... ...

    Abstract KEY MESSAGE: Diagnostic markers for Rrs1Rₕ₄ have been identified by testing for associations between SNPs within the Rrs1 interval in 150 barley genotypes and their resistance to Rhynchosporium commune isolates recognised by lines containing Rrs1. Rhynchosporium or barley scald, caused by the destructive fungal pathogen Rhynchosporium commune, is one of the most economically important diseases of barley in the world. Barley landraces from Syria and Jordan demonstrated high resistance to rhynchosporium in the field. Genotyping of a wide range of barley cultivars and landraces, including known sources of different Rrs1 genes/alleles, across the Rrs1 interval, followed by association analysis of this genotypic data with resistance phenotypes to R. commune isolates recognised by Rrs1, allowed the identification of diagnostic markers for Rrs1Rₕ₄. These markers are specific to Rrs1Rₕ₄ and do not detect other Rrs1 genes/alleles. The Rrs1Rₕ₄ diagnostic markers represent a resource that can be exploited by breeders for the sustainable deployment of varietal resistance in new cultivars. Thirteen out of the 55 most resistant Syrian and Jordanian landraces were shown to contain markers specific to Rrs1Rₕ₄. One of these lines came from Jordan, with the remaining 12 lines from different locations in Syria. One of the Syrian landraces containing Rrs1Rₕ₄ was also shown to have Rrs2. The remaining landraces that performed well against rhynchosporium in the field are likely to contain other resistance genes and represent an important novel resource yet to be exploited by European breeders.
    Keywords Rhynchosporium ; barley ; cultivars ; fungi ; genotyping ; landraces ; pathogens ; varietal resistance ; Jordan ; Syria
    Language English
    Dates of publication 2020-04
    Size p. 1243-1264.
    Publishing place Springer Berlin Heidelberg
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 2170-2
    ISSN 1432-2242 ; 0040-5752
    ISSN (online) 1432-2242
    ISSN 0040-5752
    DOI 10.1007/s00122-020-03545-9
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Characterisation of barley resistance to rhynchosporium on chromosome 6HS.

    Coulter, Max / Büttner, Bianca / Hofmann, Kerstin / Bayer, Micha / Ramsay, Luke / Schweizer, Günther / Waugh, Robbie / Looseley, Mark E / Avrova, Anna

    TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

    2018  Volume 132, Issue 4, Page(s) 1089–1107

    Abstract: Key message: Major resistance gene to rhynchosporium, Rrs18, maps close to the telomere on the short arm of chromosome 6H in barley. Rhynchosporium or barley scald caused by a fungal pathogen Rhynchosporium commune is one of the most destructive and ... ...

    Abstract Key message: Major resistance gene to rhynchosporium, Rrs18, maps close to the telomere on the short arm of chromosome 6H in barley. Rhynchosporium or barley scald caused by a fungal pathogen Rhynchosporium commune is one of the most destructive and economically important diseases of barley in the world. Testing of Steptoe × Morex and CIho 3515 × Alexis doubled haploid populations has revealed a large effect QTL for resistance to R. commune close to the telomere on the short arm of chromosome 6H, present in both populations. Mapping markers flanking the QTL from both populations onto the 2017 Morex genome assembly revealed a rhynchosporium resistance locus independent of Rrs13 that we named Rrs18. The causal gene was fine mapped to an interval of 660 Kb using Steptoe × Morex backcross 1 S
    MeSH term(s) Ascomycota/isolation & purification ; Ascomycota/physiology ; Chromosomes, Plant/genetics ; Crosses, Genetic ; Disease Resistance/genetics ; Genes, Plant ; Genetic Markers ; Hordeum/genetics ; Hordeum/microbiology ; Molecular Sequence Annotation ; Physical Chromosome Mapping ; Plant Diseases/genetics ; Plant Diseases/microbiology ; Polymorphism, Single Nucleotide/genetics ; Quantitative Trait Loci/genetics
    Chemical Substances Genetic Markers
    Language English
    Publishing date 2018-12-13
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2170-2
    ISSN 1432-2242 ; 0040-5752
    ISSN (online) 1432-2242
    ISSN 0040-5752
    DOI 10.1007/s00122-018-3262-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1

    Looseley, Mark E / Griffe, Lucie L / Büttner, Bianca / Wright, Kathryn M / Bayer, Micha M / Coulter, Max / Thauvin, Jean-Noël / Middlefell-Williams, Jill / Maluk, Marta / Okpo, Aleksandra / Kettles, Nicola / Werner, Peter / Byrne, Ed / Avrova, Anna

    TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

    2020  Volume 133, Issue 4, Page(s) 1243–1264

    Abstract: Key message: Diagnostic markers for ... ...

    Abstract Key message: Diagnostic markers for Rrs1
    MeSH term(s) Alleles ; Ascomycota/physiology ; Chromosome Segregation/genetics ; Disease Resistance/genetics ; Ecotype ; Exome/genetics ; Genes, Plant ; Genetic Loci ; Genetic Markers ; Genotype ; Geography ; Green Fluorescent Proteins/metabolism ; Hordeum/genetics ; Hordeum/microbiology ; Jordan ; Models, Genetic ; Phenotype ; Plant Diseases/genetics ; Plant Diseases/microbiology ; Polymorphism, Single Nucleotide/genetics ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Reproducibility of Results ; Syria
    Chemical Substances Genetic Markers ; RNA, Messenger ; Green Fluorescent Proteins (147336-22-9)
    Language English
    Publishing date 2020-01-22
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2170-2
    ISSN 1432-2242 ; 0040-5752
    ISSN (online) 1432-2242
    ISSN 0040-5752
    DOI 10.1007/s00122-020-03545-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes.

    Sabbadin, Federico / Urresti, Saioa / Henrissat, Bernard / Avrova, Anna O / Welsh, Lydia R J / Lindley, Peter J / Csukai, Michael / Squires, Julie N / Walton, Paul H / Davies, Gideon J / Bruce, Neil C / Whisson, Stephen C / McQueen-Mason, Simon J

    Science (New York, N.Y.)

    2021  Volume 373, Issue 6556, Page(s) 774–779

    Abstract: ... The ... ...

    Abstract The oomycete
    MeSH term(s) Copper ; Lycopersicon esculentum/parasitology ; Mixed Function Oxygenases/chemistry ; Mixed Function Oxygenases/genetics ; Mixed Function Oxygenases/metabolism ; Models, Molecular ; Oxidation-Reduction ; Pectins/metabolism ; Phytophthora infestans/enzymology ; Phytophthora infestans/genetics ; Phytophthora infestans/pathogenicity ; Plant Diseases/parasitology ; Plant Leaves/parasitology ; Polysaccharides/metabolism ; Protein Conformation ; Protein Domains ; Solanum tuberosum/parasitology ; Virulence Factors/chemistry ; Virulence Factors/genetics ; Virulence Factors/metabolism
    Chemical Substances Polysaccharides ; Virulence Factors ; Copper (789U1901C5) ; Pectins (89NA02M4RX) ; Mixed Function Oxygenases (EC 1.-) ; polygalacturonic acid (VV3XD4CL04)
    Language English
    Publishing date 2021-07-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abj1342
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Fragmentation of tRNA in Phytophthora infestans asexual life cycle stages and during host plant infection.

    Åsman, Anna K M / Vetukuri, Ramesh R / Jahan, Sultana N / Fogelqvist, Johan / Corcoran, Pádraic / Avrova, Anna O / Whisson, Stephen C / Dixelius, Christina

    BMC microbiology

    2014  Volume 14, Page(s) 308

    Abstract: Background: The oomycete Phytophthora infestans possesses active RNA silencing pathways, which presumably enable this plant pathogen to control the large numbers of transposable elements present in its 240 Mb genome. Small RNAs (sRNAs), central ... ...

    Abstract Background: The oomycete Phytophthora infestans possesses active RNA silencing pathways, which presumably enable this plant pathogen to control the large numbers of transposable elements present in its 240 Mb genome. Small RNAs (sRNAs), central molecules in RNA silencing, are known to also play key roles in this organism, notably in regulation of critical effector genes needed for infection of its potato host.
    Results: To identify additional classes of sRNAs in oomycetes, we mapped deep sequencing reads to transfer RNAs (tRNAs) thereby revealing the presence of 19-40 nt tRNA-derived RNA fragments (tRFs). Northern blot analysis identified abundant tRFs corresponding to half tRNA molecules. Some tRFs accumulated differentially during infection, as seen by examining sRNAs sequenced from P. infestans-potato interaction libraries. The putative connection between tRF biogenesis and the canonical RNA silencing pathways was investigated by employing hairpin RNA-mediated RNAi to silence the genes encoding P. infestans Argonaute (PiAgo) and Dicer (PiDcl) endoribonucleases. By sRNA sequencing we show that tRF accumulation is PiDcl1-independent, while Northern hybridizations detected reduced levels of specific tRNA-derived species in the PiAgo1 knockdown line.
    Conclusions: Our findings extend the sRNA diversity in oomycetes to include fragments derived from non-protein-coding RNA transcripts and identify tRFs with elevated levels during infection of potato by P. infestans.
    MeSH term(s) Blotting, Northern ; Gene Expression Regulation, Fungal ; Gene Silencing ; High-Throughput Nucleotide Sequencing ; Host-Pathogen Interactions ; Life Cycle Stages ; Phytophthora infestans/genetics ; Phytophthora infestans/metabolism ; Phytophthora infestans/physiology ; Plant Diseases/microbiology ; RNA, Fungal/chemistry ; RNA, Fungal/genetics ; RNA, Fungal/metabolism ; RNA, Transfer/chemistry ; RNA, Transfer/genetics ; RNA, Transfer/metabolism ; Solanum tuberosum/microbiology
    Chemical Substances RNA, Fungal ; RNA, Transfer (9014-25-9)
    Language English
    Publishing date 2014-12-10
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1471-2180
    ISSN (online) 1471-2180
    DOI 10.1186/s12866-014-0308-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element.

    Vetukuri, Ramesh R / Tian, Zhendong / Avrova, Anna O / Savenkov, Eugene I / Dixelius, Christina / Whisson, Stephen C

    Fungal biology

    2011  Volume 115, Issue 12, Page(s) 1225–1233

    Abstract: Phytophthora infestans is the notorious oomycete causing late blight of potato and tomato. A large proportion of the P. infestans genome is composed of transposable elements, the activity of which may be controlled by RNA silencing. Accumulation of small ...

    Abstract Phytophthora infestans is the notorious oomycete causing late blight of potato and tomato. A large proportion of the P. infestans genome is composed of transposable elements, the activity of which may be controlled by RNA silencing. Accumulation of small RNAs is one of the hallmarks of RNA silencing. Here we demonstrate the presence of small RNAs corresponding to the sequence of a short interspersed retrotransposable element (SINE) suggesting that small RNAs might be involved in silencing of SINEs in P. infestans. This notion was exploited to develop novel tools for gene silencing in P. infestans by engineering transcriptional fusions of the PiAvr3a gene, encoding an RXLR avirulence effector, to the infSINEm retroelement. Transgenic P. infestans lines expressing either 5'-infSINEm::PiAvr3a-3' or 5'-PiAvr3a::SINEm-3' chimeric transcripts initially exhibited partial silencing of PiAvr3a. Over time, PiAvr3a either recovered wild type transcript levels in some lines, or became fully silenced in others. Introduction of an inverted repeat construct was also successful in yielding P. infestans transgenic lines silenced for PiAvr3a. In contrast, constructs expressing antisense or aberrant RNA transcripts failed to initiate silencing of PiAvr3a. Lines exhibiting the most effective silencing of PiAvr3a were either weakly or non-pathogenic on susceptible potato cv. Bintje. This study expands the repertoire of reverse genetics tools available for P. infestans research, and provides insights into a possible mode of variation in effector expression through spread of silencing from adjacent retroelements.
    MeSH term(s) Gene Silencing ; Phytophthora infestans/genetics ; Phytophthora infestans/metabolism ; Phytophthora infestans/pathogenicity ; Plant Diseases/parasitology ; Reverse Genetics/methods ; Short Interspersed Nucleotide Elements ; Solanum tuberosum/parasitology ; Transcription, Genetic ; Virulence ; Virulence Factors/genetics ; Virulence Factors/metabolism
    Chemical Substances AVR3a protein, Phytophthora infestans ; Virulence Factors
    Language English
    Publishing date 2011-12
    Publishing country Netherlands
    Document type Evaluation Studies ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2532164-X
    ISSN 1878-6162 ; 1878-6146
    ISSN (online) 1878-6162
    ISSN 1878-6146
    DOI 10.1016/j.funbio.2011.08.007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae.

    Franco-Orozco, Barbara / Berepiki, Adokiye / Ruiz, Olaya / Gamble, Louise / Griffe, Lucie L / Wang, Shumei / Birch, Paul R J / Kanyuka, Kostya / Avrova, Anna

    The New phytologist

    2017  Volume 214, Issue 4, Page(s) 1657–1672

    Abstract: Pathogen-associated molecular patterns (PAMPs) are detected by plant pattern recognition receptors (PRRs), which gives rise to PAMP-triggered immunity (PTI). We characterized a novel fungal PAMP, Cell Death Inducing 1 (RcCDI1), identified in the ... ...

    Abstract Pathogen-associated molecular patterns (PAMPs) are detected by plant pattern recognition receptors (PRRs), which gives rise to PAMP-triggered immunity (PTI). We characterized a novel fungal PAMP, Cell Death Inducing 1 (RcCDI1), identified in the Rhynchosporium commune transcriptome sampled at an early stage of barley (Hordeum vulgare) infection. The ability of RcCDI1 and its homologues from different fungal species to induce cell death in Nicotiana benthamiana was tested following agroinfiltration or infiltration of recombinant proteins produced by Pichia pastoris. Virus-induced gene silencing (VIGS) and transient expression of Phytophthora infestans effectors PiAVR3a and PexRD2 were used to assess the involvement of known components of PTI in N. benthamiana responses to RcCDI1. RcCDI1 was highly upregulated early during barley colonization with R. commune. RcCDI1 and its homologues from different fungal species, including Zymoseptoria tritici, Magnaporthe oryzae and Neurospora crassa, exhibited PAMP activity, inducing cell death in Solanaceae but not in other families of dicots or monocots. RcCDI1-triggered cell death was shown to require N. benthamiana Brassinosteroid insensitive 1-Associated Kinase 1 (NbBAK1), N. benthamiana suppressor of BIR1-1 (NbSOBIR1) and N. benthamiana SGT1 (NbSGT1), but was not suppressed by PiAVR3a or PexRD2. We report the identification of a novel Ascomycete PAMP, RcCDI1, recognized by Solanaceae but not by monocots, which activates cell death through a pathway that is distinct from that triggered by the oomycete PAMP INF1.
    MeSH term(s) Amino Acid Sequence ; Ascomycota/genetics ; Ascomycota/pathogenicity ; Ascomycota/physiology ; Cell Death ; Conserved Sequence ; Fungal Proteins/genetics ; Fungal Proteins/metabolism ; Hordeum/microbiology ; Host-Pathogen Interactions/physiology ; Pathogen-Associated Molecular Pattern Molecules/metabolism ; Phylogeny ; Plant Cells/microbiology ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Solanaceae/cytology ; Solanaceae/microbiology ; Nicotiana/genetics ; Nicotiana/microbiology ; Virulence Factors/genetics ; Virulence Factors/metabolism
    Chemical Substances AVR3a protein, Phytophthora infestans ; Fungal Proteins ; Pathogen-Associated Molecular Pattern Molecules ; Plant Proteins ; Virulence Factors
    Language English
    Publishing date 2017-04-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 208885-x
    ISSN 1469-8137 ; 0028-646X
    ISSN (online) 1469-8137
    ISSN 0028-646X
    DOI 10.1111/nph.14542
    Database MEDical Literature Analysis and Retrieval System OnLINE

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