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  1. Article ; Online: Development of a scoring system for survival following surgery for metastatic bone disease.

    Baumber, Rachel / Gerrand, Craig / Cooper, Michael / Aston, William

    The bone & joint journal

    2021  Volume 103-B, Issue 11, Page(s) 1725–1730

    Abstract: Aims: The incidence of bone metastases is between 20% to 75% depending on the type of cancer. As treatment improves, the number of patients who need surgical intervention is increasing. Identifying patients with a shorter life expectancy would allow ... ...

    Abstract Aims: The incidence of bone metastases is between 20% to 75% depending on the type of cancer. As treatment improves, the number of patients who need surgical intervention is increasing. Identifying patients with a shorter life expectancy would allow surgical intervention with more durable reconstructions to be targeted to those most likely to benefit. While previous scoring systems have focused on surgical and oncological factors, there is a need to consider comorbidities and the physiological state of the patient, as these will also affect outcome. The primary aim of this study was to create a scoring system to estimate survival time in patients with bony metastases and to determine which factors may adversely affect this.
    Methods: This was a retrospective study which included all patients who had presented for surgery with metastatic bone disease. The data collected included patient, surgical, and oncological variables. Univariable and multivariable analysis identified which factors were associated with a survival time of less than six months and less than one year. A model to predict survival based on these factors was developed using Cox regression.
    Results: A total of 164 patients were included with a median survival time of 1.6 years (interquartile range 0.5 to 3.1) after surgery. On multivariable analysis, a higher American Society of Anesthesiologists grade (p < 0.001), a high white cell count (p = 0.002), hyponatraemia (p = 0.001), a preoperative resting heart rate of > 100 bpm (p = 0.052), and the type of primary cancer (p = 0.026) remained significant predictors of reduced survival time. The predictive model developed showed good discrimination and calibration to predict both six- and 12-month survival in patients with metastatic bone disease.
    Conclusion: In addition to surgical and oncological factors, the level of comorbidity and physiological state of the patient has a significant impact on survival in patients with metastatic bone disease. These factors should be considered when assessing the appropriateness of surgical intervention. This is the first study to examine other patient factors alongside surgical and oncological data to identify a relationship between these and survival. Cite this article:
    MeSH term(s) Aged ; Bone Neoplasms/diagnosis ; Bone Neoplasms/mortality ; Bone Neoplasms/secondary ; Bone Neoplasms/surgery ; Female ; Humans ; Male ; Middle Aged ; Prognosis ; Retrospective Studies ; Survival Rate
    Language English
    Publishing date 2021-10-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 2697156-2
    ISSN 2049-4408 ; 2049-4394
    ISSN (online) 2049-4408
    ISSN 2049-4394
    DOI 10.1302/0301-620X.103B11.BJJ-2020-2261.R1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Risk stratification of individuals undergoing surgery after COVID 19 recovery. Response to Br J Anaesth 2022; 128: e37-9.

    Baumber, Rachel / Panagoda, Prasan / Cremin, James / Flynn, Paul

    British journal of anaesthesia

    2021  Volume 128, Issue 2, Page(s) e57–e58

    MeSH term(s) COVID-19 ; Humans ; Risk Assessment ; SARS-CoV-2
    Language English
    Publishing date 2021-11-20
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 80074-0
    ISSN 1471-6771 ; 0007-0912
    ISSN (online) 1471-6771
    ISSN 0007-0912
    DOI 10.1016/j.bja.2021.11.022
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Preoperative

    Bhudia, Nisha / Bakhai, Ameet / Baumber, Rachel

    Annals of internal medicine

    2020  Volume 172, Issue 12, Page(s) 842–843

    MeSH term(s) Cardiovascular Diseases/etiology ; Cohort Studies ; Humans ; Natriuretic Peptide, Brain ; Peptide Fragments ; Predictive Value of Tests
    Chemical Substances Peptide Fragments ; Natriuretic Peptide, Brain (114471-18-0)
    Language English
    Publishing date 2020-06-12
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 336-0
    ISSN 1539-3704 ; 0003-4819
    ISSN (online) 1539-3704
    ISSN 0003-4819
    DOI 10.7326/L20-0268
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Arm Based on LEg blood pressures (ABLE-BP): can systolic leg blood pressure measurements predict systolic brachial blood pressure? Protocol for an individual participant data meta-analysis from the INTERPRESS-IPD Collaboration.

    McDonagh, Sinead T J / Sheppard, James P / Warren, Fiona C / Boddy, Kate / Farmer, Leon / Shore, Helen / Williams, Phil / Lewis, Philip S / Baumber, Rachel / Fordham, Jayne / Martin, Una / Aboyans, Victor / Clark, Christopher E

    BMJ open

    2021  Volume 11, Issue 3, Page(s) e040481

    Abstract: Introduction: Blood pressure (BP) is normally measured on the upper arm, and guidelines for the diagnosis and treatment of high BP are based on such measurements. Leg BP measurement can be an alternative when brachial BP measurement is impractical, due ... ...

    Abstract Introduction: Blood pressure (BP) is normally measured on the upper arm, and guidelines for the diagnosis and treatment of high BP are based on such measurements. Leg BP measurement can be an alternative when brachial BP measurement is impractical, due to injury or disability. Limited data exist to guide interpretation of leg BP values for hypertension management; study-level systematic review findings suggest that systolic BP (SBP) is 17 mm Hg higher in the leg than the arm. However, uncertainty remains about the applicability of this figure in clinical practice due to substantial heterogeneity.
    Aims: To examine the relationship between arm and leg SBP, develop and validate a multivariable model predicting arm SBP from leg SBP and investigate the prognostic association between leg SBP and cardiovascular disease and mortality.
    Methods and analysis: Individual participant data (IPD) meta-analyses using arm and leg SBP measurements for 33 710 individuals from 14 studies within the Inter-arm blood pressure difference IPD (INTERPRESS-IPD) Collaboration. We will explore cross-sectional relationships between arm and leg SBP using hierarchical linear regression with participants nested by study, in multivariable models. Prognostic models will be derived for all-cause and cardiovascular mortality and cardiovascular events.
    Ethics and dissemination: Data originate from studies with prior ethical approval and consent, and data sharing agreements are in place-no further approvals are required to undertake the secondary analyses proposed in this protocol. Findings will be published in peer-reviewed journal articles and presented at conferences. A comprehensive dissemination strategy is in place, integrated with patient and public involvement.
    Prospero registration number: CRD42015031227.
    MeSH term(s) Blood Pressure ; Blood Pressure Determination ; Cross-Sectional Studies ; Humans ; Hypertension/diagnosis ; Leg ; Meta-Analysis as Topic
    Language English
    Publishing date 2021-03-19
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2599832-8
    ISSN 2044-6055 ; 2044-6055
    ISSN (online) 2044-6055
    ISSN 2044-6055
    DOI 10.1136/bmjopen-2020-040481
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Delivery of drinking, eating and mobilising (DrEaMing) and its association with length of hospital stay after major noncardiac surgery: observational cohort study.

    Oliver, Charles M / Warnakulasuriya, Samantha / McGuckin, Dermot / Singleton, Georgina / Martin, Peter / Santos, Cristel / Bedford, James / Wagstaff, Duncan / Sahni, Arun / Gilhooly, David / Wilson, Jonathan / Edwards, Kylie / Baumber, Rachel / Vindrola-Padros, Cecilia / Dorey, Jenny / Leeman, Irene / Boyd-Carson, Hannah / Vohra, Ravi / Singh, Pritam /
    Bedford, Matthew / Vallance, Abigail / Aresu, Giuseppe / Tucker, Olga / Swart, Michael / Mythen, Monty G / Moonesinghe, Suneetha R

    British journal of anaesthesia

    2022  Volume 129, Issue 1, Page(s) 114–126

    Abstract: Background: Enhanced recovery pathways are associated with improved postoperative outcomes. However, as enhanced recovery pathways have become more complex and varied, compliance has reduced. The 'DrEaMing' bundle re-prioritises early postoperative ... ...

    Abstract Background: Enhanced recovery pathways are associated with improved postoperative outcomes. However, as enhanced recovery pathways have become more complex and varied, compliance has reduced. The 'DrEaMing' bundle re-prioritises early postoperative delivery of drinking, eating, and mobilising. We investigated relationships between DrEaMing compliance, postoperative hospital length of stay (LOS), and complications in a prospective multicentre major surgical cohort.
    Methods: We interrogated the UK Perioperative Quality Improvement Programme dataset. Analyses were conducted in four stages. In an exploratory cohort, we identified independent predictors of DrEaMing. We quantified the association between delivery of DrEaMing (and its component variables) and prolonged LOS in a homogenous colorectal subgroup and assessed generalisability in multispecialty patients. Finally, LOS and complications were compared across hospitals, stratified by DrEaMing compliance.
    Results: The exploratory cohort comprised 22 218 records, the colorectal subgroup 7230, and the multispecialty subgroup 5713. DrEaMing compliance was 59% (13 112 patients), 60% (4341 patients), and 60% (3421), respectively, but varied substantially between hospitals. Delivery of DrEaMing predicted reduced odds of prolonged LOS in colorectal (odds ratio 0.51 [0.43-0.59], P<0.001) and multispecialty cohorts (odds ratio 0.47 [0.41-0.53], P<0.001). At the hospital level, complications were not the primary determinant of LOS after colorectal surgery, but consistent delivery of DrEaMing was associated with significantly shorter LOS.
    Conclusions: Delivery of bundled and unbundled DrEaMing was associated with substantial reductions in postoperative LOS, independent of the effects of confounder variables. Consistency of process delivery, and not complications, predicted shorter hospital-level length of stay. DrEaMing may be adopted by perioperative health systems as a quality metric to support improved patient outcomes and reduced hospital length of stay.
    MeSH term(s) Cohort Studies ; Colorectal Neoplasms/surgery ; Humans ; Length of Stay ; Postoperative Complications/epidemiology ; Prospective Studies
    Language English
    Publishing date 2022-05-12
    Publishing country England
    Document type Journal Article ; Observational Study ; Research Support, Non-U.S. Gov't
    ZDB-ID 80074-0
    ISSN 1471-6771 ; 0007-0912
    ISSN (online) 1471-6771
    ISSN 0007-0912
    DOI 10.1016/j.bja.2022.03.021
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: The Perioperative Quality Improvement Programme (PQIP patient study): protocol for a UK multicentre, prospective cohort study to measure quality of care and outcomes after major surgery.

    Moonesinghe, S Ramani / McGuckin, Dermot / Martin, Peter / Bedford, James / Wagstaff, Duncan / Gilhooly, David / Santos, Cristel / Wilson, Jonathan / Dorey, Jenny / Leeman, Irene / Smith, Helena / Vindrola-Padros, Cecilia / Edwards, Kylie / Singleton, Georgina / Swart, Michael / Baumber, Rachel / Sahni, Arun / Warnakulasuriya, Samantha / Vohra, Ravi /
    Ellicott, Helen / Bougeard, Anne-Marie / Chazapis, Maria / Ignacka, Aleksandra / Cripps, Martin / Brent, Alexandra / Drake, Sharon / Goodwin, James / Martinez, Dorian / Williams, Karen / Singh, Pritam / Bedford, Matthew / Vallance, Abigail E / Samuel, Katie / Lourtie, Jose / Olive, Dominic / Taylor, Christine / Tucker, Olga / Aresu, Giuseppe / Swift, Andrew / Fulop, Naomi / Grocott, Mike

    Perioperative medicine (London, England)

    2022  Volume 11, Issue 1, Page(s) 37

    Abstract: Introduction: Major surgery accounts for a substantial proportion of health service activity, due not only to the primary procedure, but the longer-term health implications of poor short-term outcome. Data from small studies or from outside the UK ... ...

    Abstract Introduction: Major surgery accounts for a substantial proportion of health service activity, due not only to the primary procedure, but the longer-term health implications of poor short-term outcome. Data from small studies or from outside the UK indicate that rates of complications and failure to rescue vary between hospitals, as does compliance with best practice processes. Within the UK, there is currently no system for monitoring postoperative complications (other than short-term mortality) in major non-cardiac surgery. Further, there is variation between national audit programmes, in the emphasis placed on quality assurance versus quality improvement, and therefore the principles of measurement and reporting which are used to design such programmes.
    Methods and analysis: The PQIP patient study is a multi-centre prospective cohort study which recruits patients undergoing major surgery. Patient provide informed consent and contribute baseline and outcome data from their perspective using a suite of patient-reported outcome tools. Research and clinical staff complete data on patient risk factors and outcomes in-hospital, including two measures of complications. Longer-term outcome data are collected through patient feedback and linkage to national administrative datasets (mortality and readmissions). As well as providing a uniquely granular dataset for research, PQIP provides feedback to participating sites on their compliance with evidence-based processes and their patients' outcomes, with the aim of supporting local quality improvement.
    Ethics and dissemination: Ethical approval has been granted by the Health Research Authority in the UK. Dissemination of interim findings (non-inferential) will form a part of the improvement methodology and will be provided to participating centres at regular intervals, including near-real time feedback of key process measures. Inferential analyses will be published in the peer-reviewed literature, supported by a comprehensive multi-modal communications strategy including to patients, policy makers and academic audiences as well as clinicians.
    Language English
    Publishing date 2022-08-09
    Publishing country England
    Document type Journal Article
    ZDB-ID 2683800-X
    ISSN 2047-0525
    ISSN 2047-0525
    DOI 10.1186/s13741-022-00262-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Occludin phosphorylation: identification of an occludin kinase in brain and cell extracts as CK2.

    Smales, Caroline / Ellis, Moira / Baumber, Rachel / Hussain, Nayer / Desmond, Howard / Staddon, James M

    FEBS letters

    2003  Volume 545, Issue 2-3, Page(s) 161–166

    Abstract: In epithelial and endothelial cells, tight junctions limit paracellular flux of ions, proteins and other macromolecules. However, mechanisms regulating tight junction function are not clear. Occludin, a tight junction protein, undergoes phosphorylation ... ...

    Abstract In epithelial and endothelial cells, tight junctions limit paracellular flux of ions, proteins and other macromolecules. However, mechanisms regulating tight junction function are not clear. Occludin, a tight junction protein, undergoes phosphorylation changes in several situations but little is known about occludin kinases. A recombinant C-terminal fragment of occludin is a substrate for a kinase in crude extracts of brain. This activity was purified about 10000-fold and identified as CK2 (casein kinase 2) by peptide mass fingerprinting, immunoblotting and mutation of CK2 sites within the occludin sequence. CK2 is therefore a candidate kinase for regulation of occludin phosphorylation in vivo.
    MeSH term(s) Amino Acid Sequence ; Amino Acid Substitution ; Animals ; Binding Sites ; Brain/enzymology ; Casein Kinase II ; Cell Extracts/chemistry ; Cell Fractionation ; Membrane Proteins/metabolism ; Mutagenesis, Site-Directed ; Occludin ; Phosphorylation ; Point Mutation ; Protein-Serine-Threonine Kinases/chemistry ; Protein-Serine-Threonine Kinases/genetics ; Protein-Serine-Threonine Kinases/isolation & purification ; Recombinant Proteins/chemistry ; Recombinant Proteins/metabolism ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Swine
    Chemical Substances Cell Extracts ; Membrane Proteins ; Occludin ; Recombinant Proteins ; Casein Kinase II (EC 2.7.11.1) ; Protein-Serine-Threonine Kinases (EC 2.7.11.1)
    Language English
    Publishing date 2003-06-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 212746-5
    ISSN 1873-3468 ; 0014-5793
    ISSN (online) 1873-3468
    ISSN 0014-5793
    DOI 10.1016/s0014-5793(03)00525-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Natural variation reveals key amino acids in a downy mildew effector that alters recognition specificity by an Arabidopsis resistance gene.

    Allen, Rebecca L / Meitz, Julia C / Baumber, Rachel E / Hall, Sharon A / Lee, Sarah C / Rose, Laura E / Beynon, Jim L

    Molecular plant pathology

    2007  Volume 9, Issue 4, Page(s) 511–523

    Abstract: RPP13, a member of the cytoplasmic class of disease resistance genes, encodes one of the most variable Arabidopsis proteins so far identified. This variability is matched in ATR13, the protein from the oomycete downy mildew pathogen Hyaloperonospora ... ...

    Abstract RPP13, a member of the cytoplasmic class of disease resistance genes, encodes one of the most variable Arabidopsis proteins so far identified. This variability is matched in ATR13, the protein from the oomycete downy mildew pathogen Hyaloperonospora parasitica recognized by RPP13, suggesting that these proteins are involved in tight reciprocal coevolution. ATR13 exhibits five domains: an N-terminal signal peptide, an RXLR motif, a heptad leucine/isoleucine repeat, an 11-amino-acid repeated sequence and a C-terminal domain. We show that the conserved RXLR-containing domain is dispensable for ATR13-mediated recognition, consistent with its role in transport into the plant cytoplasm. Sequencing ATR13 from 16 isolates of H. parasitica revealed high levels of amino acid diversity across the entire protein. The leucines/isoleucines of the heptad leucine repeat were conserved, and mutation of particular leucine or isoleucine residues altered recognition by RPP13. Natural variation has not exploited this route to detection avoidance, suggesting a key role of this domain in pathogenicity. The extensive variation in the 11-amino-acid repeat units did not affect RPP13 recognition. Domain swap analysis showed that recognition specificity lay in the C-terminal domain of ATR13. Variation analyses combined with functional assays allowed the identification of four amino acid positions that may play a role in recognition specificity. Site-directed mutagenesis confirmed that a threonine residue is absolutely required for RPP13 recognition and that recognition can be modulated by the presence of either an arginine or glutamic acid at other sites. Mutations in these three amino acids had no effect on the interaction of ATR13 with a resistance gene unlinked to RPP13, consistent with their critical role in determining RPP13-Nd recognition specificity.
    MeSH term(s) Amino Acid Sequence ; Arabidopsis/genetics ; Arabidopsis/microbiology ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Binding Sites/genetics ; Genetic Variation ; Immunity, Innate/genetics ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Mutation ; Oomycetes/genetics ; Oomycetes/metabolism ; Plant Diseases/genetics ; Plant Diseases/microbiology ; Protein Binding ; Sequence Homology, Amino Acid ; Threonine/genetics
    Chemical Substances Arabidopsis Proteins ; RPP13 protein, Arabidopsis ; Threonine (2ZD004190S)
    Language English
    Publishing date 2007-10-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2020755-4
    ISSN 1364-3703 ; 1364-3703
    ISSN (online) 1364-3703
    ISSN 1364-3703
    DOI 10.1111/j.1364-3703.2008.00481.x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Natural variation reveals key amino acids in a downy mildew effector that alters recognition specificity by an Arabidopsis resistance gene

    ALLEN, REBECCA L / MEITZ, JULIA C / BAUMBER, RACHEL E / HALL, SHARON A / LEE, SARAH C / ROSE, LAURA E / BEYNON, JIM L

    Molecular plant pathology. 2008 July, v. 9, no. 4

    2008  

    Abstract: RPP13, a member of the cytoplasmic class of disease resistance genes, encodes one of the most variable Arabidopsis proteins so far identified. This variability is matched in ATR13, the protein from the oomycete downy mildew pathogen Hyaloperonospora ... ...

    Abstract RPP13, a member of the cytoplasmic class of disease resistance genes, encodes one of the most variable Arabidopsis proteins so far identified. This variability is matched in ATR13, the protein from the oomycete downy mildew pathogen Hyaloperonospora parasitica recognized by RPP13, suggesting that these proteins are involved in tight reciprocal coevolution. ATR13 exhibits five domains: an N‐terminal signal peptide, an RXLR motif, a heptad leucine/isoleucine repeat, an 11‐amino‐acid repeated sequence and a C‐terminal domain. We show that the conserved RXLR‐containing domain is dispensable for ATR13‐mediated recognition, consistent with its role in transport into the plant cytoplasm. Sequencing ATR13 from 16 isolates of H. parasitica revealed high levels of amino acid diversity across the entire protein. The leucines/isoleucines of the heptad leucine repeat were conserved, and mutation of particular leucine or isoleucine residues altered recognition by RPP13. Natural variation has not exploited this route to detection avoidance, suggesting a key role of this domain in pathogenicity. The extensive variation in the 11‐amino‐acid repeat units did not affect RPP13 recognition. Domain swap analysis showed that recognition specificity lay in the C‐terminal domain of ATR13. Variation analyses combined with functional assays allowed the identification of four amino acid positions that may play a role in recognition specificity. Site‐directed mutagenesis confirmed that a threonine residue is absolutely required for RPP13 recognition and that recognition can be modulated by the presence of either an arginine or glutamic acid at other sites. Mutations in these three amino acids had no effect on the interaction of ATR13 with a resistance gene unlinked to RPP13, consistent with their critical role in determining RPP13‐Nd recognition specificity.
    MeSH term(s) Amino Acid Sequence ; Arabidopsis/genetics/microbiology ; Arabidopsis Proteins/genetics/metabolism ; Binding Sites/genetics ; Genetic Variation ; Immunity, Innate/genetics ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Mutation ; Oomycetes/genetics/metabolism ; Plant Diseases/genetics/microbiology ; Protein Binding ; Sequence Homology, Amino Acid ; Threonine/genetics
    Keywords Arabidopsis ; Peronospora parasitica ; arginine ; coevolution ; cytoplasm ; disease resistance ; downy mildew ; genes ; glutamic acid ; isoleucine ; leucine ; pathogenicity ; pathogens ; proteins ; signal peptide ; site-directed mutagenesis ; threonine
    Language English
    Dates of publication 2008-07
    Size p. 511-523.
    Publishing place Blackwell Publishing Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 2020755-4
    ISSN 1364-3703 ; 1464-6722
    ISSN (online) 1364-3703
    ISSN 1464-6722
    DOI 10.1111/j.1364-3703.2008.00481.x
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  10. Article ; Online: Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions.

    Hall, Sharon A / Allen, Rebecca L / Baumber, Rachel E / Baxter, Laura A / Fisher, Kate / Bittner-Eddy, Peter D / Rose, Laura E / Holub, Eric B / Beynon, Jim L

    Molecular plant pathology

    2009  Volume 10, Issue 4, Page(s) 449–457

    Abstract: The RPP13 [recognition of Hyaloperonospora arabidopsidis (previously known as Peronospora parasitica)] resistance (R) gene in Arabidopsis thaliana exhibits the highest reported level of sequence diversity among known R genes. Consistent with a co- ... ...

    Abstract The RPP13 [recognition of Hyaloperonospora arabidopsidis (previously known as Peronospora parasitica)] resistance (R) gene in Arabidopsis thaliana exhibits the highest reported level of sequence diversity among known R genes. Consistent with a co-evolutionary model, the matching effector protein ATR13 (A. thaliana-recognized) from H. arabidopsidis reveals extreme levels of allelic diversity. We isolated 23 new RPP13 sequences from a UK metapopulation, giving a total of 47 when combined with previous studies. We used these in functional studies of the A. thaliana accessions for their resistance response to 16 isolates of H. arabidopsidis. We characterized the molecular basis of recognition by the expression of the corresponding ATR13 genes from these 16 isolates in these host accessions. This allowed the determination of which alleles of RPP13 were responsible for pathogen recognition and whether recognition was dependent on the RPP13/ATR13 combination. Linking our functional studies with phylogenetic analysis, we determined that: (i) the recognition of ATR13 is mediated by alleles in just a single RPP13 clade; (ii) RPP13 alleles in other clades have evolved the ability to detect other pathogen ATR protein(s); and (iii) at least one gene, unlinked to RPP13 in A. thaliana, detects a different subgroup of ATR13 alleles.
    MeSH term(s) Alleles ; Arabidopsis/genetics ; Arabidopsis/microbiology ; Arabidopsis Proteins/genetics ; Base Sequence ; Epistasis, Genetic ; Gene Regulatory Networks ; Genetic Variation ; Host-Pathogen Interactions/genetics ; Oomycetes/genetics ; Phylogeny
    Chemical Substances Arabidopsis Proteins ; RPP13 protein, Arabidopsis
    Language English
    Publishing date 2009-06-11
    Publishing country England
    Document type Journal Article
    ZDB-ID 2020755-4
    ISSN 1364-3703 ; 1464-6722
    ISSN (online) 1364-3703
    ISSN 1464-6722
    DOI 10.1111/j.1364-3703.2009.00544.x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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