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  1. Article ; Online: State-specific morphological deformations of the lipid bilayer explain mechanosensitive gating of MscS ion channels.

    Park, Yein Christina / Reddy, Bharat / Bavi, Navid / Perozo, Eduardo / Faraldo-Gómez, José D

    eLife

    2023  Volume 12

    Abstract: The force-from-lipids hypothesis of cellular mechanosensation posits that membrane channels open and close in response to changes in the physical state of the lipid bilayer, induced for example by lateral tension. Here, we investigate the molecular basis ...

    Abstract The force-from-lipids hypothesis of cellular mechanosensation posits that membrane channels open and close in response to changes in the physical state of the lipid bilayer, induced for example by lateral tension. Here, we investigate the molecular basis for this transduction mechanism by studying the mechanosensitive ion channel MscS from Escherichia coli and its eukaryotic homolog MSL1 from Arabidopsis thaliana. First, we use single-particle cryo-electron microscopy to determine the structure of a novel open conformation of wild-type MscS, stabilized in a thinned lipid nanodisc. Compared with the closed state, the structure shows a reconfiguration of helices TM1, TM2, and TM3a, and widening of the central pore. Based on these structures, we examined how the morphology of the membrane is altered upon gating, using molecular dynamics simulations. The simulations reveal that closed-state MscS causes drastic protrusions in the inner leaflet of the lipid bilayer, both in the absence and presence of lateral tension, and for different lipid compositions. These deformations arise to provide adequate solvation to hydrophobic crevices under the TM1-TM2 hairpin, and clearly reflect a high-energy conformation for the membrane, particularly under tension. Strikingly, these protrusions are largely eradicated upon channel opening. An analogous computational study of open and closed MSL1 recapitulates these findings. The gating equilibrium of MscS channels thus appears to be dictated by opposing conformational preferences, namely those of the lipid membrane and of the protein structure. We propose a membrane deformation model of mechanosensation, which posits that tension shifts the gating equilibrium towards the conductive state not because it alters the mode in which channel and lipids interact, but because it increases the energetic cost of the morphological perturbations in the membrane required by the closed state.
    MeSH term(s) Cryoelectron Microscopy ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; Ion Channels/metabolism ; Lipid Bilayers/chemistry ; Lipid Bilayers/metabolism ; Mechanotransduction, Cellular ; Molecular Dynamics Simulation
    Chemical Substances Escherichia coli Proteins ; Ion Channels ; Lipid Bilayers ; MscS protein, E coli
    Language English
    Publishing date 2023-01-30
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, N.I.H., Intramural
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.81445
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  2. Article: Folding of Prestin's Anion-Binding Site and the Mechanism of Outer Hair Cell Electromotility.

    Lin, Xiaoxuan / Haller, Patrick / Bavi, Navid / Faruk, Nabil / Perozo, Eduardo / Sosnick, Tobin R

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Prestin responds to transmembrane voltage fluctuations by changing its cross-sectional area, a process underlying the electromotility of outer hair cells and cochlear amplification. Prestin belongs to the SLC26 family of anion transporters yet is the ... ...

    Abstract Prestin responds to transmembrane voltage fluctuations by changing its cross-sectional area, a process underlying the electromotility of outer hair cells and cochlear amplification. Prestin belongs to the SLC26 family of anion transporters yet is the only member capable of displaying electromotility. Prestin's voltage-dependent conformational changes are driven by the putative displacement of residue R399 and a set of sparse charged residues within the transmembrane domain, following the binding of a Cl
    Language English
    Publishing date 2023-10-01
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.02.27.530320
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Folding of prestin's anion-binding site and the mechanism of outer hair cell electromotility.

    Lin, Xiaoxuan / Haller, Patrick R / Bavi, Navid / Faruk, Nabil / Perozo, Eduardo / Sosnick, Tobin R

    eLife

    2023  Volume 12

    Abstract: Prestin responds to transmembrane voltage fluctuations by changing its cross-sectional area, a process underlying the electromotility of outer hair cells and cochlear amplification. Prestin belongs to the SLC26 family of anion transporters yet is the ... ...

    Abstract Prestin responds to transmembrane voltage fluctuations by changing its cross-sectional area, a process underlying the electromotility of outer hair cells and cochlear amplification. Prestin belongs to the SLC26 family of anion transporters yet is the only member capable of displaying electromotility. Prestin's voltage-dependent conformational changes are driven by the putative displacement of residue R399 and a set of sparse charged residues within the transmembrane domain, following the binding of a Cl
    MeSH term(s) Hair Cells, Auditory, Outer ; Anions ; Binding Sites ; Cochlea ; Lipid Bilayers ; Membrane Transport Proteins
    Chemical Substances Anions ; Lipid Bilayers ; Membrane Transport Proteins
    Language English
    Publishing date 2023-12-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.89635
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  4. Article ; Online: Biophysical Principles of Ion-Channel-Mediated Mechanosensory Transduction.

    Cox, Charles D / Bavi, Navid / Martinac, Boris

    Cell reports

    2019  Volume 29, Issue 1, Page(s) 1–12

    Abstract: Recent rapid progress in the field of mechanobiology has been driven by novel emerging tools and methodologies and growing interest from different scientific disciplines. Specific progress has been made toward understanding how cell mechanics is linked ... ...

    Abstract Recent rapid progress in the field of mechanobiology has been driven by novel emerging tools and methodologies and growing interest from different scientific disciplines. Specific progress has been made toward understanding how cell mechanics is linked to intracellular signaling and the regulation of gene expression in response to a variety of mechanical stimuli. There is a direct link between the mechanoreceptors at the cell surface and intracellular biochemical signaling, which in turn controls downstream effector molecules. Among the mechanoreceptors in the cell membrane, mechanosensitive (MS) ion channels are essential for the ultra-rapid (millisecond) transduction of mechanical stimuli into biologically relevant signals. The three decades of research on mechanosensitive channels resulted in the formulation of two basic principles of mechanosensitive channel gating: force-from-lipids and force-from-filament. In this review, we revisit the biophysical principles that underlie the innate force-sensing ability of mechanosensitive channels as contributors to the force-dependent evolution of life forms.
    MeSH term(s) Animals ; Biophysics/methods ; Cell Membrane/metabolism ; Cell Membrane/physiology ; Humans ; Ion Channels/metabolism ; Mechanoreceptors/metabolism ; Mechanotransduction, Cellular/physiology ; Signal Transduction/physiology
    Chemical Substances Ion Channels
    Language English
    Publishing date 2019-10-02
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2019.08.075
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  5. Article ; Online: Asymmetric effects of amphipathic molecules on mechanosensitive channels.

    Bavi, Omid / Zhou, Zijing / Bavi, Navid / Mehdi Vaez Allaei, S / Cox, Charles D / Martinac, B

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 9976

    Abstract: Mechanosensitive (MS) ion channels are primary transducers of mechanical force into electrical and/or chemical intracellular signals. Many diverse MS channel families have been shown to respond to membrane forces. As a result of this intimate ... ...

    Abstract Mechanosensitive (MS) ion channels are primary transducers of mechanical force into electrical and/or chemical intracellular signals. Many diverse MS channel families have been shown to respond to membrane forces. As a result of this intimate relationship with the membrane and proximal lipids, amphipathic compounds exert significant effects on the gating of MS channels. Here, we performed all-atom molecular dynamics (MD) simulations and employed patch-clamp recording to investigate the effect of two amphipaths, Fluorouracil (5-FU) a chemotherapy agent, and the anaesthetic trifluoroethanol (TFE) on structurally distinct mechanosensitive channels. We show that these amphipaths have a profound effect on the bilayer order parameter as well as transbilayer pressure profile. We used bacterial mechanosensitive channels (MscL/MscS) and a eukaryotic mechanosensitive channel (TREK-1) as force-from-lipids reporters and showed that these amphipaths have differential effects on these channels depending on the amphipaths' size and shape as well as which leaflet of the bilayer they incorporate into. 5-FU is more asymmetric in shape and size than TFE and does not penetrate as deep within the bilayer as TFE. Thereby, 5-FU has a more profound effect on the bilayer and channel activity than TFE at much lower concentrations. We postulate that asymmetric effects of amphipathic molecules on mechanosensitive membrane proteins through the bilayer represents a general regulatory mechanism for these proteins.
    MeSH term(s) Escherichia coli/metabolism ; Escherichia coli Proteins/metabolism ; Fluorouracil/pharmacology ; Humans ; Ion Channels/metabolism ; Lipid Bilayers/chemistry ; Lipids/pharmacology ; Mechanotransduction, Cellular ; Polytetrafluoroethylene/pharmacology ; Trifluoroethanol/metabolism
    Chemical Substances Escherichia coli Proteins ; Ion Channels ; Lipid Bilayers ; Lipids ; MscL protein, E coli ; Trifluoroethanol (75-89-8) ; Polytetrafluoroethylene (9002-84-0) ; Fluorouracil (U3P01618RT)
    Language English
    Publishing date 2022-06-15
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-14446-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: PIEZO1-Mediated Currents Are Modulated by Substrate Mechanics.

    Bavi, Navid / Richardson, Jessica / Heu, Celine / Martinac, Boris / Poole, Kate

    ACS nano

    2019  Volume 13, Issue 11, Page(s) 13545–13559

    Abstract: PIEZO1 is ... ...

    Abstract PIEZO1 is a
    Language English
    Publishing date 2019-11-12
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1936-086X
    ISSN (online) 1936-086X
    DOI 10.1021/acsnano.9b07499
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  7. Article ; Online: Molecular basis of force-from-lipids gating in the mechanosensitive channel MscS.

    Reddy, Bharat / Bavi, Navid / Lu, Allen / Park, Yeonwoo / Perozo, Eduardo

    eLife

    2019  Volume 8

    Abstract: Prokaryotic mechanosensitive (MS) channels open by sensing the physical state of the membrane. As such, lipid-protein interactions represent the defining molecular process underlying mechanotransduction. Here, we describe cryo-electron microscopy (cryo- ... ...

    Abstract Prokaryotic mechanosensitive (MS) channels open by sensing the physical state of the membrane. As such, lipid-protein interactions represent the defining molecular process underlying mechanotransduction. Here, we describe cryo-electron microscopy (cryo-EM) structures of the
    MeSH term(s) Cryoelectron Microscopy ; Escherichia coli/chemistry ; Escherichia coli/genetics ; Escherichia coli/ultrastructure ; Escherichia coli Proteins/chemistry ; Escherichia coli Proteins/genetics ; Ion Channels/chemistry ; Ion Channels/genetics ; Lipid Bilayers/chemistry ; Lipids/chemistry ; Lipids/genetics ; Mechanotransduction, Cellular/genetics ; Nanostructures/chemistry
    Chemical Substances Escherichia coli Proteins ; Ion Channels ; Lipid Bilayers ; Lipids ; MscS protein, E coli
    Language English
    Publishing date 2019-12-27
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.50486
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  8. Article ; Online: Membrane stiffness is one of the key determinants of E. coli MscS channel mechanosensitivity.

    Xue, Feng / Cox, Charles D / Bavi, Navid / Rohde, Paul R / Nakayama, Yoshitaka / Martinac, Boris

    Biochimica et biophysica acta. Biomembranes

    2020  Volume 1862, Issue 5, Page(s) 183203

    Abstract: Mechanosensitive (MS) channels have an intimate relationship with membrane lipids that underlie their mechanosensitivity. Membrane lipids may influence channel activity by directly interacting with MS channels or by influencing the global properties of ... ...

    Abstract Mechanosensitive (MS) channels have an intimate relationship with membrane lipids that underlie their mechanosensitivity. Membrane lipids may influence channel activity by directly interacting with MS channels or by influencing the global properties of the membrane such as elastic area expansion modulus or bending rigidity. Previous work has implicated membrane stiffness as a potential determinant of the mechanosensitivity of E. coli (Ec)MscS. Here we systematically tested this hypothesis using patch fluorometry of azolectin liposomes doped with lipids of increasing elastic area expansion modulus. Increasing dioleoylphosphatidylethanolamine (DOPE) content of azolectin liposomes made it more difficult to activate EcMscS by membrane tension (i.e. increased gating threshold). This effect was exacerbated by stiffer forms of phosphatidylethanolamine such as the branched chain lipid diphytanoylphosphoethanolamine (DPhPE) or the fully saturated lipid distearoyl-sn-glycero-3-phosphoethanolamine (DSPE). Furthermore, a comparison of the branched chain lipid diphytanoylphosphocholine (DPhPC) to the stiffer DPhPE indicated again that it was harder to activate EcMscS in the presence of the stiffer DPhPE. We show that these effects are not due to changes in membrane bending rigidity as the membrane tension threshold of EcMscS in membranes doped with PC18:1 and PC18:3 remained the same, despite a two-fold difference in their bending rigidity. We also show that after prolonged pressure application sudden removal of force in softer membranes caused a rebound reactivation of EcMscS and we discuss the relevance of this phenomenon to bacterial osmoregulation. Collectively, our data suggests that membrane stiffness (elastic area expansion modulus) is one of the key determinants of the mechanosensitivity of EcMscS.
    MeSH term(s) Biological Transport ; Biomechanical Phenomena/physiology ; Escherichia coli/metabolism ; Escherichia coli Proteins/chemistry ; Escherichia coli Proteins/metabolism ; Ion Channel Gating/physiology ; Ion Channels/chemistry ; Ion Channels/metabolism ; Lipid Bilayers/chemistry ; Lipid Bilayers/metabolism ; Liposomes/metabolism ; Mechanotransduction, Cellular/physiology ; Membrane Lipids/metabolism ; Membranes/metabolism ; Patch-Clamp Techniques/methods ; Phosphatidylcholines/metabolism ; Phosphatidylethanolamines ; Spheroplasts/metabolism
    Chemical Substances Escherichia coli Proteins ; Ion Channels ; Lipid Bilayers ; Liposomes ; Membrane Lipids ; MscS protein, E coli ; Phosphatidylcholines ; Phosphatidylethanolamines ; dioleoyl phosphatidylethanolamine (2462-63-7) ; phosphatidylethanolamine (39382-08-6) ; asolectin (69279-91-0) ; 1,2-dielaidoylphosphatidylethanolamine (76391-83-8)
    Language English
    Publishing date 2020-01-22
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 60-7
    ISSN 1879-2642 ; 1879-2596 ; 1879-260X ; 1872-8006 ; 1879-2618 ; 1879-2650 ; 0006-3002 ; 0005-2728 ; 0005-2736 ; 0304-4165 ; 0167-4838 ; 1388-1981 ; 0167-4889 ; 0167-4781 ; 0304-419X ; 1570-9639 ; 0925-4439 ; 1874-9399
    ISSN (online) 1879-2642 ; 1879-2596 ; 1879-260X ; 1872-8006 ; 1879-2618 ; 1879-2650
    ISSN 0006-3002 ; 0005-2728 ; 0005-2736 ; 0304-4165 ; 0167-4838 ; 1388-1981 ; 0167-4889 ; 0167-4781 ; 0304-419X ; 1570-9639 ; 0925-4439 ; 1874-9399
    DOI 10.1016/j.bbamem.2020.183203
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Bacterial Mechanosensors.

    Cox, Charles D / Bavi, Navid / Martinac, Boris

    Annual review of physiology

    2017  Volume 80, Page(s) 71–93

    Abstract: Bacteria represent one of the most evolutionarily successful groups of organisms to inhabit Earth. Their world is awash with mechanical cues, probably the most ancient form of which are osmotic forces. As a result, they have developed highly robust ... ...

    Abstract Bacteria represent one of the most evolutionarily successful groups of organisms to inhabit Earth. Their world is awash with mechanical cues, probably the most ancient form of which are osmotic forces. As a result, they have developed highly robust mechanosensors in the form of bacterial mechanosensitive (MS) channels. These channels are essential in osmoregulation, and in this setting, provide one of the simplest paradigms for the study of mechanosensory transduction. We explore the past, present, and future of bacterial MS channels, including the alternate mechanosensory roles that they may play in complex microbial communities. Central to all of these functions is their ability to change conformation in response to mechanical stimuli. We discuss their gating according to the force-from-lipids principle and its applicability to eukaryotic MS channels. This includes the new paradigms emerging for bilayer-mediated channel mechanosensitivity and how this molecular detail may provide advances in both industry and medicine.
    MeSH term(s) Bacteria/metabolism ; Bacterial Proteins/metabolism ; Cell Membrane/metabolism ; Ion Channels/physiology ; Mechanoreceptors/metabolism ; Mechanotransduction, Cellular/physiology ; Osmoregulation/physiology
    Chemical Substances Bacterial Proteins ; Ion Channels
    Language English
    Publishing date 2017-12-01
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 207933-1
    ISSN 1545-1585 ; 0066-4278
    ISSN (online) 1545-1585
    ISSN 0066-4278
    DOI 10.1146/annurev-physiol-021317-121351
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  10. Article ; Online: The conformational cycle of prestin underlies outer-hair cell electromotility.

    Bavi, Navid / Clark, Michael David / Contreras, Gustavo F / Shen, Rong / Reddy, Bharat G / Milewski, Wieslawa / Perozo, Eduardo

    Nature

    2021  Volume 600, Issue 7889, Page(s) 553–558

    Abstract: The voltage-dependent motor protein prestin (also known as SLC26A5) is responsible for the electromotive behaviour of outer-hair cells and underlies the cochlear ... ...

    Abstract The voltage-dependent motor protein prestin (also known as SLC26A5) is responsible for the electromotive behaviour of outer-hair cells and underlies the cochlear amplifier
    MeSH term(s) Animals ; Anion Transport Proteins/metabolism ; Anions/metabolism ; Cryoelectron Microscopy ; Hair Cells, Auditory, Outer/metabolism ; Mammals/metabolism ; Proteins/metabolism ; Sulfate Transporters/metabolism
    Chemical Substances Anion Transport Proteins ; Anions ; Proteins ; Sulfate Transporters
    Language English
    Publishing date 2021-10-25
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-021-04152-4
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