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  1. Thesis ; Online: Hyperspectral remote sensing of the spatial and temporal heterogeneity of low Arctic vegetation

    Beamish, A.

    2019  

    Abstract: Arctic tundra ecosystems are experiencing warming twice the global average and Arctic vegetation is responding in complex and heterogeneous ways. Shifting productivity, growth, species composition, and phenology at local and regional scales have ... ...

    Abstract Arctic tundra ecosystems are experiencing warming twice the global average and Arctic vegetation is responding in complex and heterogeneous ways. Shifting productivity, growth, species composition, and phenology at local and regional scales have implications for ecosystem functioning as well as the global carbon and energy balance. Optical remote sensing is an effective tool for monitoring ecosystem functioning in this remote biome. However, limited field-based spectral characterization of the spatial and temporal heterogeneity limits the accuracy of quantitative optical remote sensing at landscape scales. To address this research gap and support current and future satellite missions, three central research questions were posed: ? Does canopy-level spectral variability differ between dominant low Arctic vegetation communities and does this variability change between major phenological phases? ? How does canopy-level vegetation colour images recorded with high and low spectral resolution devices relate to phenological changes in leaf-level photosynthetic pigment concentrations? ? How does spatial aggregation of high spectral resolution data from the ground to satellite scale influence low Arctic tundra vegetation signatures and thereby what is the potential of upcoming hyperspectral spaceborne systems for low Arctic vegetation characterization? To answer these questions a unique and detailed database was assembled. Field-based canopy-level spectral reflectance measurements, nadir digital photographs, and photosynthetic pigment concentrations of dominant low Arctic vegetation communities were acquired at three major phenological phases representing early, peak and late season. Data were collected in 2015 and 2016 in the Toolik Lake Research Natural Area located in north central Alaska on the North Slope of the Brooks Range. In addition to field data an aerial AISA hyperspectral image was acquired in the late season of 2016. Simulations of broadband Sentinel-2 and hyperspectral Environmental and Mapping Analysis Program (EnMAP) satellite reflectance spectra from ground-based reflectance spectra as well as simulations of EnMAP imagery from aerial hyperspectral imagery were also obtained. Results showed that canopy-level spectral variability within and between vegetation communities differed by phenological phase. The late season was identified as the most discriminative for identifying many dominant vegetation communities using both groundbased and simulated hyperspectral reflectance spectra. This was due to an overall reduction in spectral variability and comparable or greater differences in spectral reflectance between vegetation communities in the visible near infrared spectrum. Red, green, and blue (RGB) indices extracted from nadir digital photographs and pigmentdriven vegetation indices extracted from ground-based spectral measurements showed strong significant relationships. RGB indices also showed moderate relationships with chlorophyll and carotenoid pigment concentrations. The observed relationships with the broadband RGB channels of the digital camera indicate that vegetation colour strongly influences the response of pigment-driven spectral indices and digital cameras can track the seasonal development and degradation of photosynthetic pigments. Spatial aggregation of hyperspectral data from the ground to airborne, to simulated satellite scale was influenced by non-photosynthetic components as demonstrated by the distinct shift of the red edge to shorter wavelengths. Correspondence between spectral reflectance at the three scales was highest in the red spectrum and lowest in the near infrared. By artificially mixing litter spectra at different proportions to ground-based spectra, correspondence with aerial and satellite spectra increased. Greater proportions of litter were required to achieve correspondence at the satellite scale. Overall this thesis found that integrating multiple temporal, spectral, and spatial data is necessary to monitor the complexity and heterogeneity of Arctic tundra ecosystems. The identification of spectrally similar vegetation communities can be optimized using nonpeak season hyperspectral data leading to more detailed identification of vegetation communities. The results also highlight the power of vegetation colour to link ground-based and satellite data. Finally, a detailed characterization non-photosynthetic ecosystem components is crucial for accurate interpretation of vegetation signals at landscape scales.

    Die arktische Erwärmung beeinflusst Produktivität, Wachstums, Artenzusammensetzung, Phänologie und den Reproduktionserfolg arktischer Vegetation, mit Auswirkungen auf die Ökosystemfunktionen sowie auf den globalen Kohlenstoff- und Energiehaushalt. Feldbasierte Messungen und spektrale Charakterisierungen der räumlichen und zeitlichen Heterogenität arktischer Vegetationsgemeinschaften sind limitiert und die Genauigkeit fernerkundlicher Methoden im Landschaftsmaßstab eingeschränkt. Um diese Forschungslücke zu schließen und aktuelle und zukünftige Satellitenmissionen zu unterstützen, wurden drei zentrale Forschungsfragen entwickelt: 1) Wie unterscheidet sich die spektrale Variabilität des Kronendaches zwischen dominanten Vegetationsgemeinschaften der niederen Arktis und wie verändert sich diese Variabilität zwischen den wichtigsten phänologischen Phasen? 2) Wie hängen Aufnahmen der Vegetationsfarbe des Kronendaches von hoch und niedrig auflösenden Geräten mit phänologischen Veränderungen des photosynthetischen Pigmentgehalts auf Blattebene zusammen? 3) Wie beeinflusst die räumliche Aggregation von Daten mit hoher spektraler Auflösung von der Boden- bis zur Satelliten-Skala die arktischen Vegetationssignale der Tundra und welches Potenzial haben zukünftige hyperspektraler Satellitensysteme für die arktische Vegetationscharakterisierung? Zur Beantwortung dieser Fragen wurde eine detaillierte Datenbank aus feldbasierten Daten erstellt und mit hyperspektralen Luftbildern sowie multispektralen Sentinel-2 und simulierten hyperspektralen EnMAP Satellitendaten verglichen. Die Ergebnisse zeigten, dass die Spätsai-son am besten geeignet ist um dominante Vegetationsgemeinschaften mit Hilfe von hyper-spektralen Daten zu identifizieren. Ebenfalls konnte gezeigt werden, dass die mit handelsüb-lichen Digitalkameras aufgenommene Vegetationsfarbe pigmentgesteuerte Spektralindizes stark beeinflusst und den Verlauf von photosynthetischen Pigmenten nachverfolgen kann. Die räumliche Aggregation hyperspektraler Daten von der Boden- über die Luft- zur Satelli-tenskala wurde durch nicht-photosynthetische Komponenten beeinflusst und die spektralen Reflexionsvermögen der drei Skalen stimmten im roten Spektrum am höchsten und im nahen Infrarotbereich am niedrigsten überein. Die vorliegende Arbeit zeigt, dass die Integration zeitlicher, spektraler und räumlicher Daten notwendig ist, um Komplexität und Heterogenität arktischer Vegetationsreaktionen in Reaktion auf klimatische Veränderungen zu überwachen.
    Subject code 710
    Language English
    Publisher Universität Potsdam
    Publishing country de
    Document type Thesis ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article: Venerable relic: the Great Elm on the Boston Common

    Beamish, Anne

    Arboricultural journal. 2017 July 3, v. 39, no. 3

    2017  

    Abstract: The subject of endless speculation and stories, the “Great Elm”, “Old Elm” or the “Great Tree”, was the oldest and largest tree on the Boston Common and a beloved citizen of the city until its demise in 1876. The tree was central to the ... ...

    Abstract The subject of endless speculation and stories, the “Great Elm”, “Old Elm” or the “Great Tree”, was the oldest and largest tree on the Boston Common and a beloved citizen of the city until its demise in 1876. The tree was central to the culture and identity of the city. Not only was it located in the city’s most important civic space, it was a physical link or witness to the city’s long and turbulent past. But in spite of its age and importance, it only became revered in its later years, and with J.C. Warren’s 1853 The Great Tree on the Boston Common it became a celebrity. In addition to constant debate about its age, the Great Elm also suffered from a case of mistaken identity and was often confused with the “Liberty Tree” on nearby Orange Street where effigies were hung to protest the reviled 1765 Stamp Act. In spite of its importance and the city’s vow to never forget, memories faded and facts were quickly forgotten. This paper retraces the Great Elm’s history and its emergence as an important historical icon for the city in a time of enormous upheaval and change.
    Keywords arboriculture ; trees ; Ulmus ; Massachusetts
    Language English
    Dates of publication 2017-0703
    Size p. 144-161.
    Publishing place Taylor & Francis
    Document type Article
    ISSN 2168-1074
    DOI 10.1080/03071375.2017.1379237
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Defining quality assessment in vascular surgery training: an expert Delphi process.

    Travers, H C / Beamish, A J / McCarthy, M / Lewis, D R

    Annals of the Royal College of Surgeons of England

    2023  Volume 106, Issue 1, Page(s) 70–77

    Abstract: Introduction: A robust and reproducible way of assessing training should optimise and standardise vascular surgical training. This study describes the methodology supporting the Vascular Surgery Specialty Advisory Committee regional quality assurance ... ...

    Abstract Introduction: A robust and reproducible way of assessing training should optimise and standardise vascular surgical training. This study describes the methodology supporting the Vascular Surgery Specialty Advisory Committee regional quality assurance reports for vascular surgery training programmes in the UK.
    Methods: A Delphi consensus exercise was performed to establish the domains of training that most appropriately assess the quality of a vascular surgery training programme. A total of 54 stakeholders were invited to participate, including trainees, training programme directors and members of the vascular speciality advisory committee (SAC), vascular society executive and education committees.
    Results: A total of 39 stakeholders successfully completed the three-stage Delphi process over 15 weeks. The domains identified as most appropriate to assess the quality of a vascular training programme were: Joint Committee on Surgical Training (JCST) survey results, clinical experience, regional education programmes, radiology support, timetable, regional support for trainees, trainer support for trainees, opportunities for professional development, trainee-rated quality of consultant teaching and training, and trainee recommendation of the post.
    Conclusions: This study describes a method to identify and prioritise domains that are appropriate to assess the quality of a vascular training programme. The domains that were identified as appropriate to assess quality are transferable internationally and the Delphi methodology could be used by other training schemes to 'fine-tune' their own domains to review and optimise the quality of their own training programmes.
    MeSH term(s) Humans ; Specialties, Surgical/education ; Curriculum ; Education, Medical, Graduate/methods ; Vascular Surgical Procedures ; Consensus ; Clinical Competence
    Language English
    Publishing date 2023-02-13
    Publishing country England
    Document type Journal Article
    ZDB-ID 80044-2
    ISSN 1478-7083 ; 0035-8843
    ISSN (online) 1478-7083
    ISSN 0035-8843
    DOI 10.1308/rcsann.2022.0146
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Author's response to: Frugal solutions for the operating room during the COVID-19 pandemic.

    Ryan Harper, E / Beamish, A J

    The British journal of surgery

    2020  Volume 107, Issue 9, Page(s) e333

    MeSH term(s) Betacoronavirus ; COVID-19 ; Coronavirus Infections ; Humans ; Operating Rooms ; Pandemics ; Pneumonia, Viral ; SARS-CoV-2
    Keywords covid19
    Language English
    Publishing date 2020-07-13
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 2985-3
    ISSN 1365-2168 ; 0263-1202 ; 0007-1323 ; 1355-7688
    ISSN (online) 1365-2168
    ISSN 0263-1202 ; 0007-1323 ; 1355-7688
    DOI 10.1002/bjs.11797
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online: Toolik Lake Research Natural Area AISA-Eagle hyperspectral Mosaic

    Beamish, A. / Chabrillat, S. / Brell, M. / Heim, B. / Sachs, T.

    EnMAP Flight Campaigns Technical Reports

    an EnMAP Preparatory Flight Campaign

    2020  

    Abstract: The dataset is composed of AisaEAGLE airborne hyperspectral imagery data acquired during the AIRMETH2016 campaign on August 27th, 2016 within the Toolik Lake Natural Research Area on the Alaskan North Slope. The Toolik Lake Research Natural Area is ... ...

    Abstract The dataset is composed of AisaEAGLE airborne hyperspectral imagery data acquired during the AIRMETH2016 campaign on August 27th, 2016 within the Toolik Lake Natural Research Area on the Alaskan North Slope. The Toolik Lake Research Natural Area is representative of the North Slope physiographic province of the Southern Arctic Foothills (Walker et al., 1989). Dominant vegetation types are dictated by soil moisture and geology and include moist tussock tundra, wet sedge meadows, and dry upland heaths. The dataset includes three flight lines with 130 spectral bands ranging from VIS to NIR (451.7 – 897 nm) wavelength regions. The dataset also includes Level 2A EnMAP simulated imagery using the end-to-end Simulation tool (EeteS) with 78 bands from VIS to NIR (423 – 903 mn). The overall goal of the campaign was to acquire airborne imagery over the Toolik Vegetation grid encompassing 94 permanent 1 x 1 m vegetation plots where corresponding, comprehensive multi-seasonal spectral reflectance, photosynthetic pigment, and detailed species composition data exists. The remote sensing data are highly novel and can be used for vegetation mapping of species composition, plant biomass, and photosynthetic activity.
    Language English
    Publisher GFZ Data Services
    Publishing country de
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: A realist evaluation of weighted modalities as an alternative to pro re nata medication for mental health inpatients.

    Dawson, Suzanne / Oster, Candice / Scanlan, Justin / Kernot, Jocelyn / Ayling, Barry / Pelichowski, Katarzyna / Beamish, Amelia

    International journal of mental health nursing

    2022  Volume 31, Issue 3, Page(s) 553–566

    Abstract: Implementing psychosocial approaches into mental health inpatient settings continues to be challenging. This is despite mental health policies prioritizing trauma-informed and recovery-orientated care approaches. This study reports on an ... ...

    Abstract Implementing psychosocial approaches into mental health inpatient settings continues to be challenging. This is despite mental health policies prioritizing trauma-informed and recovery-orientated care approaches. This study reports on an interdisciplinary project that implemented and examined the uptake of weighted modalities in a psychiatric inpatient rehabilitation setting. While over-reliance on pro re nata (PRN) medication in these settings has been reported, weighted modalities are a sensory approach that can be self-initiated by consumers as an alternative to use of PRN to manage distress and agitation. A mixed-methods realist approach was used to determine what works, for whom, and in what circumstances weighted modalities were offered by clinicians and used by consumers. Additionally, we were interested in determining whether there was an associated change in PRN use during the trial. Data included in-depth interviews with consumers (n = 12) and clinicians (n = 11), and extraction of PRN medication use preceding, throughout, and following implementation. Statistical analysis revealed a significant increase in PRN rates in the first 3 months of implementation (mean difference from baseline = 29.5, P = 0.047) but a significant decrease in the second three-month period following implementation (mean difference from baseline = -30.7, P = 0.036). Qualitative findings highlighted the key components of successful implementation as being environmental restructuring (availability/accessibility and visibility of weighted modalities) and social influences. Strategies to enhance these components are discussed.
    MeSH term(s) Humans ; Inpatients/psychology ; Mental Disorders/drug therapy ; Mental Health
    Language English
    Publishing date 2022-01-07
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 2076760-2
    ISSN 1447-0349 ; 1445-8330
    ISSN (online) 1447-0349
    ISSN 1445-8330
    DOI 10.1111/inm.12971
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: The RCS England COVID-19 Surgical Research Group: early findings and lessons to influence surgical practice.

    Mehendale, F V / Gupta, S / Beamish, A J / Akkulak, M / Hutchinson, P

    Annals of the Royal College of Surgeons of England

    2021  Volume 104, Issue 4, Page(s) 280–287

    Abstract: Introduction: Surgeons and allied professionals have been quick to respond to the need for evidence during the COVID-19 pandemic. The Royal College of Surgeons of England (RCS England) has provided formal recognition, support and guidance to all members ...

    Abstract Introduction: Surgeons and allied professionals have been quick to respond to the need for evidence during the COVID-19 pandemic. The Royal College of Surgeons of England (RCS England) has provided formal recognition, support and guidance to all members of its interdisciplinary collaborative COVID Research Group (RCS CRG). We describe research conducted by members of this group, initial findings and lessons for clinical practice so far.
    Methods: Members of the more than 50 projects included so far in the RCS CRG portfolio were invited to provide a summary of their project and findings to date. The 26 summaries received were collated and broad themes identified to produce this summary document.
    Results: Wide-ranging projects have been conducted by members of the RCS CRG, rapidly yielding crucial insights into the behaviour of the SARS-CoV-2 pathogen, its impact on patients and staff, the challenges it presents to surgical practice and investigation into methods to adapt and overcome such challenges.
    Conclusions: The response of the surgical research community to COVID-19 has been rapid and well-organised. Early establishment of a formal network under the auspices of RCS England has assisted efficient research collaboration and delivery, while avoiding academic duplication between groups. This has led to a high research output, directly informing and substantially influencing practice throughout and beyond the pandemic.
    MeSH term(s) COVID-19/epidemiology ; England/epidemiology ; Humans ; Pandemics ; SARS-CoV-2 ; Surgeons
    Language English
    Publishing date 2021-09-21
    Publishing country England
    Document type Journal Article
    ZDB-ID 80044-2
    ISSN 1478-7083 ; 0035-8843
    ISSN (online) 1478-7083
    ISSN 0035-8843
    DOI 10.1308/rcsann.2021.0216
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Book ; Online: Deliverable 3.2.1

    Beamish, A. / Kyba, C. / Coesfeld, J. / Chabrillat, S. / Salzano, R. / Salvatori, R.

    A technical report on the assessment of the capabilities and limitations of advanced optical satellite missions for snow, vegetation, and gas flaring mapping applications in Arctic areas

    2020  

    Abstract: Project: "Integrative and Comprehensive Understanding on Polar Environments (iCUPE)", WP3: "Satellite remote sensing of Arctic surfaces", Task 3.2: "Optical satellite remote sensing" ...

    Abstract Project: "Integrative and Comprehensive Understanding on Polar Environments (iCUPE)", WP3: "Satellite remote sensing of Arctic surfaces", Task 3.2: "Optical satellite remote sensing"
    Language English
    Publishing country de
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Conference proceedings ; Online: Spectral vs. Spatial scaling in low-Arctic tundra

    Beamish, A. / Heim, B. / Chabrillat, S. / Coops, N.

    Abstracts

    2017  

    Abstract: Arctic ecosystems are highly heterogeneous with small-scale variations in species composition, microtopography, and surface moisture. Additionally, the low stature of tundra vegetation and lack of major structural changes seasonally creates uncertainties ...

    Abstract Arctic ecosystems are highly heterogeneous with small-scale variations in species composition, microtopography, and surface moisture. Additionally, the low stature of tundra vegetation and lack of major structural changes seasonally creates uncertainties in the application of broadband remote sensing vegetation indices. The goal of this research is to examine the potential of high spectral resolution visible and near infrared (VNIR) spectroscopy to accurately differentiate vegetation communities as well as identify phenological stage and photosynthetic activity. Ground-based reflectance spectra were collected in 8 distinct vegetation communities at early, peak and late season in a low Arctic tundra ecosystem at the Toolik Research station on the Alaskan North Slope. The field-based reflectance spectra were used to simulate spectral data from the upcoming Environmental Mapping and Analysis Program (EnMAP) satellite to examine its applications in Arctic tundra ecosystems. Using an instability index (ISI), a waveband selection algorithm, and absorption feature band depth between 400 and 985 nm, we examined the performance of these two techniques in differentiation vegetation type and identifying biophysical parameters. Results show overall high and consistent waveband selection at major pigment absorption and reflectance features in the visible spectrum and red-edge transition when differentiating phenological stage. We expect that waveband selection when differentiating between vegetation communities will also be high in these spectral regions. Spectral band depth was well correlated to bulk pigment concentrations of chlorophyll and carotenoids. This indicates the potential to use band depth to infer photosynthetic activity. We will also examine the ability of band depth to differentiate vegetation type and phenology. The results of this research supports spectral remote sensing applications (airborne as well as current and future satellite missions) to assess vegetation heterogeneity and biophysical properties of the Arctic under a changing climate regime.
    Subject code 550
    Publishing country de
    Document type Conference proceedings ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: A Phenological Approach to Spectral Differentiation of Low-Arctic Tundra Vegetation Communities, North Slope, Alaska

    Beamish, A. / Coops, N. / Chabrillat, S. / Heim, B.

    Remote Sensing

    2017  

    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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