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  1. Article: Late-onset vs nonmendelian early-onset Alzheimer disease: A distinction without a difference?

    Reitz, Christiane / Rogaeva, Ekaterina / Beecham, Gary W

    Neurology. Genetics

    2020  Volume 6, Issue 5, Page(s) e512

    Abstract: There is mounting evidence that only a small fraction of early-onset Alzheimer disease cases (onset <65 years) are explained by known mutations. Even multiplex families with early onset often also have late-onset cases, suggesting that the commonly ... ...

    Abstract There is mounting evidence that only a small fraction of early-onset Alzheimer disease cases (onset <65 years) are explained by known mutations. Even multiplex families with early onset often also have late-onset cases, suggesting that the commonly applied categorization of Alzheimer disease into early- and late-onset forms may not reflect distinct underlying etiology. Nevertheless, this categorization continues to govern today's research and the design of clinical trials. The aim of this review is to evaluate this categorization by providing a comprehensive, critical review of reported clinical, neuropathologic, and genomic characteristics of both onset-based subtypes and explore potential overlap between both categories. The article will lay out the need to comprehensively assess the phenotypic, neuropathologic, and molecular variability in Alzheimer disease and identify factors explaining the observed significant variation in onset age in persons with and without known mutations. The article will critically review ongoing large-scale genomic efforts in Alzheimer disease research (e.g., Alzheimer Disease Sequencing Project, Dominantly Inherited Alzheimer Network, Alzheimer Disease Neuroimaging Initiative) and their shortcomings to disentangle the delineation of unexplained nonmendelian early-onset from late-onset and mendelian forms of Alzheimer disease. In addition, it will outline specific approaches including epigenetic research through which a comprehensive characterization of this delineation can be achieved.
    Language English
    Publishing date 2020-10-06
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2818607-2
    ISSN 2376-7839
    ISSN 2376-7839
    DOI 10.1212/NXG.0000000000000512
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Pedigree Selection and Information Content.

    Vardarajan, Badri N / Beecham, Gary W / Haines, Jonathan L

    Current protocols in human genetics

    2018  Volume 97, Issue 1, Page(s) e56

    Abstract: In this article, we discuss strategies for selection of families and family members for genetic studies. We will evaluate strategies to sample large families with multiply affected members, sibships, and nuclear families. In addition, we have added a ... ...

    Abstract In this article, we discuss strategies for selection of families and family members for genetic studies. We will evaluate strategies to sample large families with multiply affected members, sibships, and nuclear families. In addition, we have added a section to discuss sub-sampling within pedigrees for large sequencing studies, particularly when genome-wide SNP chips are available on all members of a pedigree. The type of family sampled for a study will determine the statistical analyses and power of discovery of genetic findings. We will evaluate study designs that maximize power and allow for linkage and association analyses to identify genetic loci predisposing to phenotype. © 2018 by John Wiley & Sons, Inc.
    MeSH term(s) Disease/genetics ; Female ; Genetic Linkage ; Genetic Loci ; Genetic Variation ; Genome-Wide Association Study/methods ; Humans ; Linkage Disequilibrium ; Male ; Models, Genetic ; Nuclear Family ; Pedigree ; Phenotype ; Research Design
    Language English
    Publishing date 2018-07-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2179054-1
    ISSN 1934-8258 ; 1934-8266
    ISSN (online) 1934-8258
    ISSN 1934-8266
    DOI 10.1002/cphg.56
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  3. Article: African ancestry

    Rajabli, Farid / Seixas, Azizi A / Akgun, Bilcag / Adams, Larry D / Inciute, Jovita / Starks, Takiyah / Laux, Renee / Byrd, Goldie S / Haines, Jonathan L / Beecham, Gary W / Vance, Jeffery M / Cuccaro, Michael L / Pericak-Vance, Margaret A

    medRxiv : the preprint server for health sciences

    2023  

    Abstract: Cognitive and functional abilities in individuals with Alzheimer disease (AD) pathology (ADP) show greater than expected variability. While most individuals show substantial impairments in these abilities, a considerable number show little or no ... ...

    Abstract Cognitive and functional abilities in individuals with Alzheimer disease (AD) pathology (ADP) show greater than expected variability. While most individuals show substantial impairments in these abilities, a considerable number show little or no impairments. Factors contributing to this variability are not well understood. For instance, multiple studies have shown that higher levels of education are associated with reduced cognitive impairments among those with ADP. However, it remains unclear whether higher levels of education are associated with functional impairments among those with ADP. We studied 410 AA individuals with advanced levels of pTau181 (a biomarker for ADP; individuals as those having log
    Language English
    Publishing date 2023-07-08
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.07.06.23292263
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Genome-Wide Linkage Study Meta-Analysis of Male Sexual Orientation.

    Sanders, Alan R / Beecham, Gary W / Guo, Shengru / Badner, Judith A / Bocklandt, Sven / Mustanski, Brian S / Hamer, Dean H / Martin, Eden R

    Archives of sexual behavior

    2021  Volume 50, Issue 8, Page(s) 3371–3375

    Abstract: Male sexual orientation is a scientifically and socially important trait shown by family and twin studies to be influenced by environmental and complex genetic factors. Individual genome-wide linkage studies (GWLS) have been conducted, but not jointly ... ...

    Abstract Male sexual orientation is a scientifically and socially important trait shown by family and twin studies to be influenced by environmental and complex genetic factors. Individual genome-wide linkage studies (GWLS) have been conducted, but not jointly analyzed. Two main datasets account for > 90% of the published GWLS concordant sibling pairs on the trait and are jointly analyzed here: MGSOSO (Molecular Genetic Study of Sexual Orientation; 409 concordant sibling pairs in 384 families, Sanders et al. (2015)) and Hamer (155 concordant sibling pairs in 145 families, Mustanski et al. (2005)). We conducted multipoint linkage analyses with Merlin on the datasets separately since they were genotyped differently, integrated genetic marker positions, and combined the resultant LOD (logarithm of the odds) scores at each 1 cM grid position. We continue to find the strongest linkage support at pericentromeric chromosome 8 and chromosome Xq28. We also incorporated the remaining published GWLS dataset (on 55 families) by using meta-analytic approaches on published summary statistics. The meta-analysis has maximized the positional information from GWLS of currently available family resources and can help prioritize findings from genome-wide association studies (GWAS) and other approaches. Although increasing evidence highlights genetic contributions to male sexual orientation, our current understanding of contributory loci is still limited, consistent with the complexity of the trait. Further increasing genetic knowledge about male sexual orientation, especially via large GWAS, should help advance our understanding of the biology of this important trait.
    MeSH term(s) Female ; Genetic Linkage ; Genome, Human ; Genome-Wide Association Study ; Humans ; Lod Score ; Male ; Sexual Behavior
    Language English
    Publishing date 2021-06-02
    Publishing country United States
    Document type Journal Article ; Meta-Analysis ; Research Support, N.I.H., Extramural ; Research Support, N.I.H., Intramural
    ZDB-ID 184221-3
    ISSN 1573-2800 ; 0004-0002
    ISSN (online) 1573-2800
    ISSN 0004-0002
    DOI 10.1007/s10508-021-02035-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: African Ancestry Individuals with Higher Educational Attainment Are Resilient to Alzheimer's Disease Measured by pTau181.

    Rajabli, Farid / Seixas, Azizi A / Akgun, Bilcag / Adams, Larry D / Inciute, Jovita / Hamilton, Kara L / Whithead, Patrice G / Konidari, Ioanna / Gu, Tianjie / Arvizu, Jamie / Golightly, Charles G / Starks, Takiyah D / Laux, Renee / Byrd, Goldie S / Haines, Jonathan L / Beecham, Gary W / Griswold, Anthony J / Vance, Jeffery M / Cuccaro, Michael L /
    Pericak-Vance, Margaret A

    Journal of Alzheimer's disease : JAD

    2024  Volume 98, Issue 1, Page(s) 221–229

    Abstract: Background: Cognitive and functional abilities in individuals with Alzheimer's disease (AD) pathology (ADP) are highly variable. Factors contributing to this variability are not well understood. Previous research indicates that higher educational ... ...

    Abstract Background: Cognitive and functional abilities in individuals with Alzheimer's disease (AD) pathology (ADP) are highly variable. Factors contributing to this variability are not well understood. Previous research indicates that higher educational attainment (EA) correlates with reduced cognitive impairments among those with ADP. While cognitive and functional impairments are correlated, they are distinguishable in their manifestations.
    Objective: To investigate whether levels of education are associated with functional impairments among those with ADP.
    Methods: This research involved 410 African American (AA) individuals (Institutional Review Boards 20070307, 01/27/2023) to ascertain whether EA correlates with functional resilience and if this effect varies between APOE ɛ4 carriers and non-carriers. Utilizing EA as a cognitive reserve proxy, CDR-FUNC as a functional difficulties measure, and blood pTau181 as an ADP proxy, the non-parametric Mann-Whitney U test assessed the relationship between EA and CDR-FUNC in individuals with advanced pTau181 levels.
    Results: The results showed that EA correlated with functional difficulties in AA individuals with high levels of pTau181, such that individuals with high EA are more likely to have better functional ability compared to those with lower EA (W = 730.5, p = 0.0007). Additionally, we found that the effect of high EA on functional resilience was stronger in ɛ4 non-carriers compared to ɛ4 carriers (W = 555.5, p = 0.022).
    Conclusion: This study extends the role of cognitive reserve and EA to functional performance showing that cognitive reserve influences the association between ADP burden and functional difficulties. Interestingly, this protective effect seems less pronounced in carriers of the strong genetic risk allele ɛ4.
    MeSH term(s) Humans ; Alzheimer Disease/genetics ; Resilience, Psychological ; Apolipoprotein E4/genetics ; Cognitive Dysfunction/genetics ; Educational Status
    Chemical Substances Apolipoprotein E4
    Language English
    Publishing date 2024-02-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1440127-7
    ISSN 1875-8908 ; 1387-2877
    ISSN (online) 1875-8908
    ISSN 1387-2877
    DOI 10.3233/JAD-231116
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  6. Article ; Online: Genetic analyses in multiplex families confirms chromosome 5q35 as a risk locus for Alzheimer's Disease in individuals of African Ancestry.

    Nuytemans, Karen / Rajabli, Farid / Jean-Francois, Melissa / Kurup, Jiji Thulaseedhara / Adams, Larry D / Starks, Takiyah D / Whitehead, Patrice L / Kunkle, Brian W / Caban-Holt, Allison / Haines, Jonathan L / Cuccaro, Michael L / Vance, Jeffery M / Byrd, Goldie S / Beecham, Gary W / Reitz, Christiane / Pericak-Vance, Margaret A

    Neurobiology of aging

    2023  Volume 133, Page(s) 125–133

    Abstract: There is a paucity of genetic studies of Alzheimer Disease (AD) in individuals of African Ancestry, despite evidence suggesting increased risk of AD in the African American (AA) population. We performed whole-genome sequencing (WGS) and multipoint ... ...

    Abstract There is a paucity of genetic studies of Alzheimer Disease (AD) in individuals of African Ancestry, despite evidence suggesting increased risk of AD in the African American (AA) population. We performed whole-genome sequencing (WGS) and multipoint linkage analyses in 51 multi-generational AA AD families ascertained through the Research in African American Alzheimer Disease Initiative (REAAADI) and the National Institute on Aging Late Onset Alzheimer's disease (NIA-LOAD) Family Based Study. Variants were prioritized on minor allele frequency (<0.01), functional potential of coding and noncoding variants, co-segregation with AD and presence in multi-ancestry ADSP release 3 WGS data. We identified a significant linkage signal on chromosome 5q35 (HLOD=3.3) driven by nine families. Haplotype segregation analysis in the family with highest LOD score identified a 3'UTR variant in INSYN2B with the most functional evidence. Four other linked AA families harbor within-family shared variants located in INSYN2B's promoter or enhancer regions. This AA family-based finding shows the importance of diversifying population-level genetic data to better understand the genetic determinants of AD on a global scale.
    MeSH term(s) Humans ; Alzheimer Disease/genetics ; Alzheimer Disease/epidemiology ; Lod Score ; Genetic Linkage/genetics ; Haplotypes ; Chromosomes ; Genetic Predisposition to Disease/genetics
    Language English
    Publishing date 2023-10-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 604505-4
    ISSN 1558-1497 ; 0197-4580
    ISSN (online) 1558-1497
    ISSN 0197-4580
    DOI 10.1016/j.neurobiolaging.2023.10.010
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  7. Article ; Online: Neuropathological lesions and their contribution to dementia and cognitive impairment in a heterogeneous clinical population.

    Godrich, Dana / Martin, Eden R / Schellenberg, Gerard / Pericak-Vance, Margaret A / Cuccaro, Michael / Scott, William K / Kukull, Walter / Montine, Thomas / Beecham, Gary W

    Alzheimer's & dementia : the journal of the Alzheimer's Association

    2022  Volume 18, Issue 12, Page(s) 2403–2412

    Abstract: Introduction: Alzheimer disease (AD) and related dementias are characterized by damage caused by neuropathological lesions in the brain. These include AD lesions (plaques and tangles) and non-AD lesions such as vascular injury or Lewy bodies. We report ... ...

    Abstract Introduction: Alzheimer disease (AD) and related dementias are characterized by damage caused by neuropathological lesions in the brain. These include AD lesions (plaques and tangles) and non-AD lesions such as vascular injury or Lewy bodies. We report here an assessment of lesion association to dementia in a large clinic-based population.
    Methods: We identified 5272 individuals with neuropathological data from the National Alzheimer's Coordinating Center. Individual lesions, as well as a neuropathological composite score (NPCS) were tested for association with dementia, and both functional and neurocognitive impairment using regression models.
    Results: Most individuals exhibited mixed pathologies, especially AD lesions in combination with non-AD lesions. All lesion types were associated with one or more clinical outcomes; most even while controlling for AD pathology. The NPCS was also associated with clinical outcomes.
    Discussion: These data suggest mixed-type pathologies are extremely common in a clinic-based population and may contribute to dementia and cognitive impairment.
    MeSH term(s) Humans ; Neurofibrillary Tangles/pathology ; Alzheimer Disease/pathology ; Cognitive Dysfunction/pathology ; Brain/pathology ; Lewy Bodies/pathology ; Plaque, Amyloid/pathology
    Language English
    Publishing date 2022-02-09
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2211627-8
    ISSN 1552-5279 ; 1552-5260
    ISSN (online) 1552-5279
    ISSN 1552-5260
    DOI 10.1002/alz.12516
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  8. Article ; Online: Confidence interval of the likelihood ratio associated with mixed stain DNA evidence.

    Beecham, Gary W / Weir, Bruce S

    Journal of forensic sciences

    2010  Volume 56 Suppl 1, Page(s) S166–71

    Abstract: Likelihood ratios are necessary to properly interpret mixed stain DNA evidence. They can flexibly consider alternate hypotheses and can account for population substructure. The likelihood ratio should be seen as an estimate and not a fixed value, because ...

    Abstract Likelihood ratios are necessary to properly interpret mixed stain DNA evidence. They can flexibly consider alternate hypotheses and can account for population substructure. The likelihood ratio should be seen as an estimate and not a fixed value, because the calculations are functions of allelic frequency estimates that were estimated from a small portion of the population. Current methods do not account for uncertainty in the likelihood ratio estimates and are therefore an incomplete picture of the strength of the evidence. We propose the use of a confidence interval to report the consequent variation of likelihood ratios. The confidence interval is calculated using the standard forensic likelihood ratio formulae and a variance estimate derived using the Taylor expansion. The formula is explained, and a computer program has been made available. Numeric work shows that the evidential strength of DNA profiles decreases as the variation among populations increases.
    MeSH term(s) Confidence Intervals ; DNA/analysis ; DNA Fingerprinting ; Databases, Nucleic Acid ; Gene Frequency ; Humans ; Likelihood Functions
    Chemical Substances DNA (9007-49-2)
    Language English
    Publishing date 2010-10-22
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 219216-0
    ISSN 1556-4029 ; 0022-1198
    ISSN (online) 1556-4029
    ISSN 0022-1198
    DOI 10.1111/j.1556-4029.2010.01600.x
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  9. Article ; Online: Author Correction: Genomic evidence consistent with antagonistic pleiotropy may help explain the evolutionary maintenance of same-sex sexual behaviour in humans.

    Zietsch, Brendan P / Sidari, Morgan J / Abdellaoui, Abdel / Maier, Robert / Långström, Niklas / Guo, Shengru / Beecham, Gary W / Martin, Eden R / Sanders, Alan R / Verweij, Karin J H

    Nature human behaviour

    2021  

    Language English
    Publishing date 2021-09-13
    Publishing country England
    Document type Published Erratum
    ISSN 2397-3374
    ISSN (online) 2397-3374
    DOI 10.1038/s41562-021-01210-9
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  10. Article ; Online: Genomic evidence consistent with antagonistic pleiotropy may help explain the evolutionary maintenance of same-sex sexual behaviour in humans.

    Zietsch, Brendan P / Sidari, Morgan J / Abdellaoui, Abdel / Maier, Robert / Långström, Niklas / Guo, Shengru / Beecham, Gary W / Martin, Eden R / Sanders, Alan R / Verweij, Karin J H

    Nature human behaviour

    2021  Volume 5, Issue 9, Page(s) 1251–1258

    Abstract: Human same-sex sexual behaviour (SSB) is heritable, confers no immediately obvious direct reproductive or survival benefit and can divert mating effort from reproductive opportunities. This presents a Darwinian paradox: why has SSB been maintained ... ...

    Abstract Human same-sex sexual behaviour (SSB) is heritable, confers no immediately obvious direct reproductive or survival benefit and can divert mating effort from reproductive opportunities. This presents a Darwinian paradox: why has SSB been maintained despite apparent selection against it? We show that genetic effects associated with SSB may, in individuals who only engage in opposite-sex sexual behaviour (OSB individuals), confer a mating advantage. Using results from a recent genome-wide association study of SSB and a new genome-wide association study on number of opposite-sex sexual partners in 358,426 individuals, we show that, among OSB individuals, genetic effects associated with SSB are associated with having more opposite-sex sexual partners. Computer simulations suggest that such a mating advantage for alleles associated with SSB could help explain how it has been evolutionarily maintained. Caveats include the cultural specificity of our UK and US samples, the societal regulation of sexual behaviour in these populations, the difficulty of measuring mating success and the fact that measured variants capture a minority of the total genetic variation in the traits.
    MeSH term(s) Choice Behavior/physiology ; Female ; Genome-Wide Association Study ; Humans ; Male ; Phenotype ; Sexual Behavior/physiology ; Sexual Partners/psychology ; Sexual and Gender Minorities/psychology ; United Kingdom ; United States
    Language English
    Publishing date 2021-08-23
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2397-3374
    ISSN (online) 2397-3374
    DOI 10.1038/s41562-021-01168-8
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