LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 69

Search options

  1. Article ; Online: Joint transformer architecture in brain 3D MRI classification: its application in Alzheimer's disease classification.

    Alp, Sait / Akan, Taymaz / Bhuiyan, Md Shenuarin / Disbrow, Elizabeth A / Conrad, Steven A / Vanchiere, John A / Kevil, Christopher G / Bhuiyan, Mohammad A N

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 8996

    Abstract: Alzheimer's disease (AD), a neurodegenerative disease that mostly affects the elderly, slowly impairs memory, cognition, and daily tasks. AD has long been one of the most debilitating chronic neurological disorders, affecting mostly people over 65. In ... ...

    Abstract Alzheimer's disease (AD), a neurodegenerative disease that mostly affects the elderly, slowly impairs memory, cognition, and daily tasks. AD has long been one of the most debilitating chronic neurological disorders, affecting mostly people over 65. In this study, we investigated the use of Vision Transformer (ViT) for Magnetic Resonance Image processing in the context of AD diagnosis. ViT was utilized to extract features from MRIs, map them to a feature sequence, perform sequence modeling to maintain interdependencies, and classify features using a time series transformer. The proposed model was evaluated using ADNI T1-weighted MRIs for binary and multiclass classification. Two data collections, Complete 1Yr 1.5T and Complete 3Yr 3T, from the ADNI database were used for training and testing. A random split approach was used, allocating 60% for training and 20% for testing and validation, resulting in sample sizes of (211, 70, 70) and (1378, 458, 458), respectively. The performance of our proposed model was compared to various deep learning models, including CNN with BiL-STM and ViT with Bi-LSTM. The suggested technique diagnoses AD with high accuracy (99.048% for binary and 99.014% for multiclass classification), precision, recall, and F-score. Our proposed method offers researchers an approach to more efficient early clinical diagnosis and interventions.
    MeSH term(s) Humans ; Aged ; Alzheimer Disease/pathology ; Neurodegenerative Diseases/pathology ; Magnetic Resonance Imaging/methods ; Neuroimaging ; Brain/diagnostic imaging ; Brain/pathology
    Language English
    Publishing date 2024-04-18
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-024-59578-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article: Editorial: Targeting Cardiac Proteotoxicity.

    Ranek, Mark J / Bhuiyan, Md Shenuarin / Wang, Xuejun

    Frontiers in physiology

    2021  Volume 12, Page(s) 669356

    Language English
    Publishing date 2021-03-25
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2564217-0
    ISSN 1664-042X
    ISSN 1664-042X
    DOI 10.3389/fphys.2021.669356
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article: Editorial: Metabolic Regulation in the Development of Cardiovascular Diseases.

    Ma, Yimei / Bhuiyan, Md Shenuarin / Kim, InKyeom / Tang, Xiaoqiang

    Frontiers in cell and developmental biology

    2021  Volume 9, Page(s) 768689

    Language English
    Publishing date 2021-10-13
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2021.768689
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: Sigma-1 receptor is involved in modification of ER-mitochondria proximity and Ca

    Tagashira, Hideaki / Bhuiyan, Md Shenuarin / Shinoda, Yasuharu / Kawahata, Ichiro / Numata, Tomohiro / Fukunaga, Kohji

    Journal of pharmacological sciences

    2022  Volume 151, Issue 2, Page(s) 128–133

    Abstract: The Sigma-1 receptor (Sigmar1) is downregulated in heart failure model mice with mitochondrial dysfunction. However, the mechanism in detail has not been investigated. In this study, we investigated the role of Sigmar1 in ER-mitochondria proximity using ... ...

    Abstract The Sigma-1 receptor (Sigmar1) is downregulated in heart failure model mice with mitochondrial dysfunction. However, the mechanism in detail has not been investigated. In this study, we investigated the role of Sigmar1 in ER-mitochondria proximity using Sigmar1-knockdown or -overexpressed neonatal rat ventricular myocytes (NRVMs). The endothelin-1 (ET-1)-induced cardiomyocyte hypertrophy was aggravated with the dysregulation of mitochondrial function and ER-mitochondrial junctional formation in Sigmar1-knockdown NRVMs, whereas improved in Sigmar1 overexpressed NRVMs. Our data suggests that the reduction of the cardiac Sigmar1 results in decrease mitochondrial Ca
    MeSH term(s) Animals ; Mice ; Rats ; Heart Failure ; Homeostasis/genetics ; Mitochondria ; Myocytes, Cardiac/metabolism ; Receptors, sigma/genetics ; Receptors, sigma/metabolism ; Endoplasmic Reticulum/metabolism ; Calcium/metabolism ; Sigma-1 Receptor
    Chemical Substances Receptors, sigma ; Calcium (SY7Q814VUP)
    Language English
    Publishing date 2022-12-19
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 2104264-0
    ISSN 1347-8648 ; 1347-8613
    ISSN (online) 1347-8648
    ISSN 1347-8613
    DOI 10.1016/j.jphs.2022.12.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Gut microbiota and microbiota-derived metabolites in cardiovascular diseases.

    Chen, Xiaofeng / Zhang, Hua / Ren, Sichong / Ding, Yangnan / Remex, Naznin Sultana / Bhuiyan, Md Shenuarin / Qu, Jiahua / Tang, Xiaoqiang

    Chinese medical journal

    2023  Volume 136, Issue 19, Page(s) 2269–2284

    Abstract: Abstract: Cardiovascular diseases, including heart failure, coronary artery disease, atherosclerosis, aneurysm, thrombosis, and hypertension, are a great economic burden and threat to human health and are the major cause of death worldwide. Recently, ... ...

    Abstract Abstract: Cardiovascular diseases, including heart failure, coronary artery disease, atherosclerosis, aneurysm, thrombosis, and hypertension, are a great economic burden and threat to human health and are the major cause of death worldwide. Recently, researchers have begun to appreciate the role of microbial ecosystems within the human body in contributing to metabolic and cardiovascular disorders. Accumulating evidence has demonstrated that the gut microbiota is closely associated with the occurrence and development of cardiovascular diseases. The gut microbiota functions as an endocrine organ that secretes bioactive metabolites that participate in the maintenance of cardiovascular homeostasis, and their dysfunction can directly influence the progression of cardiovascular disease. This review summarizes the current literature demonstrating the role of the gut microbiota in the development of cardiovascular diseases. We also highlight the mechanism by which well-documented gut microbiota-derived metabolites, especially trimethylamine N-oxide, short-chain fatty acids, and phenylacetylglutamine, promote or inhibit the pathogenesis of cardiovascular diseases. We also discuss the therapeutic potential of altering the gut microbiota and microbiota-derived metabolites to improve or prevent cardiovascular diseases.
    MeSH term(s) Humans ; Gastrointestinal Microbiome/physiology ; Cardiovascular Diseases/metabolism ; Cardiovascular Diseases/microbiology ; Methylamines/metabolism ; Fatty Acids, Volatile/metabolism ; Animals ; Glutamine/analogs & derivatives
    Chemical Substances Methylamines ; trimethyloxamine (FLD0K1SJ1A) ; Fatty Acids, Volatile ; phenylacetylglutamine (92358I79RG) ; Glutamine (0RH81L854J)
    Language English
    Publishing date 2023-10-05
    Publishing country China
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 127089-8
    ISSN 2542-5641 ; 0366-6999 ; 1002-0187
    ISSN (online) 2542-5641
    ISSN 0366-6999 ; 1002-0187
    DOI 10.1097/CM9.0000000000002206
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article: Sigmar1's Molecular, Cellular, and Biological Functions in Regulating Cellular Pathophysiology.

    Aishwarya, Richa / Abdullah, Chowdhury S / Morshed, Mahboob / Remex, Naznin Sultana / Bhuiyan, Md Shenuarin

    Frontiers in physiology

    2021  Volume 12, Page(s) 705575

    Abstract: The Sigma 1 receptor (Sigmar1) is a ubiquitously expressed multifunctional inter-organelle signaling chaperone protein playing a diverse role in cellular survival. Recessive mutation in Sigmar1 have been identified as a causative gene for neuronal and ... ...

    Abstract The Sigma 1 receptor (Sigmar1) is a ubiquitously expressed multifunctional inter-organelle signaling chaperone protein playing a diverse role in cellular survival. Recessive mutation in Sigmar1 have been identified as a causative gene for neuronal and neuromuscular disorder. Since the discovery over 40 years ago, Sigmar1 has been shown to contribute to numerous cellular functions, including ion channel regulation, protein quality control, endoplasmic reticulum-mitochondrial communication, lipid metabolism, mitochondrial function, autophagy activation, and involved in cellular survival. Alterations in Sigmar1's subcellular localization, expression, and signaling has been implicated in the progression of a wide range of diseases, such as neurodegenerative diseases, ischemic brain injury, cardiovascular diseases, diabetic retinopathy, cancer, and drug addiction. The goal of this review is to summarize the current knowledge of Sigmar1 biology focusing the recent discoveries on Sigmar1's molecular, cellular, pathophysiological, and biological functions.
    Language English
    Publishing date 2021-07-07
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2564217-0
    ISSN 1664-042X
    ISSN 1664-042X
    DOI 10.3389/fphys.2021.705575
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Visualizing Subcellular Localization of a Protein in the Heart using Quantum Dots-Mediated Immuno-Labeling followed by Transmission Electron Microscopy.

    Aishwarya, Richa / Abdullah, Chowdhury S / Remex, Naznin Sultana / Nitu, Sadia / Hartman, Brandon / King, Judy / Bhuiyan, Md Shenuarin

    Journal of visualized experiments : JoVE

    2022  , Issue 187

    Abstract: The subcellular localization is critical to delineating proper function and determining the molecular mechanisms of a particular protein. Several qualitative and quantitative techniques are used to determine the subcellular localization of proteins. One ... ...

    Abstract The subcellular localization is critical to delineating proper function and determining the molecular mechanisms of a particular protein. Several qualitative and quantitative techniques are used to determine the subcellular localization of proteins. One of the emerging techniques in determining the subcellular localization of a protein is quantum dots (QD)-mediated immunolabeling of a protein followed by imaging them with transmission electron microscopy (TEM). QD is a semiconductor nanocrystal with a dual property of crystalline structure and high electron density, which makes them applicable to electron microscopy. This current method visualized the subcellular localization of Sigma 1 receptor (Sigmar1) protein using QD-TEM in the heart tissue at ultrastructural level. Small cubes of the heart tissue sections from a wild-type mouse were fixed in 3% glutaraldehyde, subsequently osmicated, stained with uranyl acetate, followed by sequential dehydration with ethanol and acetone. These dehydrated heart tissue sections were embedded in low-viscosity epoxy resins, cut into thin sections of 500 nm thickness, put on the grid, and subsequently subjected to antigen unmasking with 5% sodium metaperiodate, followed by quenching of the residual aldehydes with glycine. The tissues were blocked, followed by sequential incubation in primary antibody, biotinylated secondary antibody, and streptavidin-conjugated QD. These stained sections were blot dried and imaged at high magnification using TEM. The QD-TEM technique allowed the visualization of Sigmar1 protein's subcellular localization at the ultrastructural level in the heart. These techniques can be used to visualize the presence of any protein and subcellular localization in any organ system.
    MeSH term(s) Acetone ; Animals ; Epoxy Resins ; Ethanol ; Glutaral ; Glycine ; Mice ; Microscopy, Electron, Transmission ; Quantum Dots ; Streptavidin
    Chemical Substances Epoxy Resins ; Acetone (1364PS73AF) ; Ethanol (3K9958V90M) ; Streptavidin (9013-20-1) ; Glutaral (T3C89M417N) ; Glycine (TE7660XO1C)
    Language English
    Publishing date 2022-09-16
    Publishing country United States
    Document type Journal Article ; Video-Audio Media ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2259946-0
    ISSN 1940-087X ; 1940-087X
    ISSN (online) 1940-087X
    ISSN 1940-087X
    DOI 10.3791/64085
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: Neurogranin regulates calcium-dependent cardiac hypertrophy.

    Jorgensen, Ashton N / Abdullah, Chowdhury S / Bhuiyan, Md Shenuarin / Watt, Megan / Dominic, Paari / Kolluru, Gopi K / Kevil, Christopher G / Nam, Hyung W

    Experimental and molecular pathology

    2022  Volume 127, Page(s) 104815

    Abstract: Intracellular ... ...

    Abstract Intracellular Ca
    MeSH term(s) Animals ; Calcium/metabolism ; Calcium-Calmodulin-Dependent Protein Kinase Type 2/genetics ; Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism ; Calmodulin/metabolism ; Cardiomegaly/metabolism ; Fibrosis ; Mice ; Mice, Knockout ; Myocytes, Cardiac/metabolism ; Neurogranin/genetics ; Neurogranin/metabolism
    Chemical Substances Calmodulin ; Neurogranin (132654-77-4) ; Calcium-Calmodulin-Dependent Protein Kinase Type 2 (EC 2.7.11.17) ; Calcium (SY7Q814VUP)
    Language English
    Publishing date 2022-07-20
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 207655-x
    ISSN 1096-0945 ; 0014-4800
    ISSN (online) 1096-0945
    ISSN 0014-4800
    DOI 10.1016/j.yexmp.2022.104815
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  9. Article ; Online: Monitoring Mitochondrial Morphology and Respiration in Doxorubicin-Induced Cardiomyopathy.

    Abdullah, Chowdhury S / Aishwarya, Richa / Morshed, Mahboob / Remex, Naznin Sultana / Miriyala, Sumitra / Panchatcharam, Manikandan / Bhuiyan, Md Shenuarin

    Methods in molecular biology (Clifton, N.J.)

    2022  Volume 2497, Page(s) 207–220

    Abstract: Doxorubicin (DOX)-induced cardiomyopathy constitutes dose-dependent cardiac toxicity, culminating in fatal heart failure progression. Cardiac toxicity limits effective and subsequent use of DOX in chemotherapy regimens in pediatric, adult, and recurrent ... ...

    Abstract Doxorubicin (DOX)-induced cardiomyopathy constitutes dose-dependent cardiac toxicity, culminating in fatal heart failure progression. Cardiac toxicity limits effective and subsequent use of DOX in chemotherapy regimens in pediatric, adult, and recurrent cancer patients. DOX-induced profound alterations in mitochondrial morphology, dynamics, and defects in mitochondrial energy metabolism in the heart comprise key stressors in DOX-induced cardiotoxicity. Hence, the discovery of novel molecular targets and therapeutics to mitigate DOX-induced mitochondrial dysfunctions are imperative. Herein, we provided two laboratory protocols to monitor DOX-induced alterations in mitochondrial morphology and respiration in isolated primary neonatal rat cardiomyocytes. Neonatal rat cardiomyocytes are extensively used to monitor signaling mechanisms regulating cardiomyopathy in vitro. Therefore, these protocols will help researchers study the effects of novel pharmacological and genetic manipulations against DOX-induced alterations in mitochondrial morphology and energy metabolism in cardiomyocytes.
    MeSH term(s) Animals ; Antibiotics, Antineoplastic/adverse effects ; Apoptosis ; Cardiomyopathies/chemically induced ; Cardiomyopathies/metabolism ; Cardiotoxicity ; Doxorubicin/adverse effects ; Humans ; Myocytes, Cardiac/metabolism ; Rats ; Respiration
    Chemical Substances Antibiotics, Antineoplastic ; Doxorubicin (80168379AG)
    Language English
    Publishing date 2022-06-25
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-2309-1_13
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article: Molecular Perspectives of Mitochondrial Adaptations and Their Role in Cardiac Proteostasis.

    Alam, Shafiul / Abdullah, Chowdhury S / Aishwarya, Richa / Morshed, Mahboob / Bhuiyan, Md Shenuarin

    Frontiers in physiology

    2020  Volume 11, Page(s) 1054

    Abstract: Mitochondria are the key to properly functioning energy generation in the metabolically demanding cardiomyocytes and thus essential to healthy heart contractility on a beat-to-beat basis. Mitochondria being the central organelle for cellular metabolism ... ...

    Abstract Mitochondria are the key to properly functioning energy generation in the metabolically demanding cardiomyocytes and thus essential to healthy heart contractility on a beat-to-beat basis. Mitochondria being the central organelle for cellular metabolism and signaling in the heart, its dysfunction leads to cardiovascular disease. The healthy mitochondrial functioning critical to maintaining cardiomyocyte viability and contractility is accomplished by adaptive changes in the dynamics, biogenesis, and degradation of the mitochondria to ensure cellular proteostasis. Recent compelling evidence suggests that the classical protein quality control system in cardiomyocytes is also under constant mitochondrial control, either directly or indirectly. Impairment of cytosolic protein quality control may affect the position of the mitochondria in relation to other organelles, as well as mitochondrial morphology and function, and could also activate mitochondrial proteostasis. Despite a growing interest in the mitochondrial quality control system, very little information is available about the molecular function of mitochondria in cardiac proteostasis. In this review, we bring together current understanding of the adaptations and role of the mitochondria in cardiac proteostasis and describe the adaptive/maladaptive changes observed in the mitochondrial network required to maintain proteomic integrity. We also highlight the key mitochondrial signaling pathways activated in response to proteotoxic stress as a cellular mechanism to protect the heart from proteotoxicity. A deeper understanding of the molecular mechanisms of mitochondrial adaptations and their role in cardiac proteostasis will help to develop future therapeutics to protect the heart from cardiovascular diseases.
    Language English
    Publishing date 2020-08-27
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2564217-0
    ISSN 1664-042X
    ISSN 1664-042X
    DOI 10.3389/fphys.2020.01054
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top