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  1. Article ; Online: Assessing the Genetic Variability of Sweet Chestnut Varieties from the Tuscan Apennine Mountains (Italy)

    Bini, Lorenzo / Gori, Massimo / Nin, Stefania / Natale, Roberto / Meacci, Elisabetta / Giordani, E. / Biricolti, Stefano

    Agronomy. 2023 July 23, v. 13, no. 7

    2023  

    Abstract: Castanea sativa Mill. is a valuable species with historical and economic importance in Europe, particularly in the Mediterranean area. In Italy, chestnut cultivation has been developed for centuries, leading to the recognition of more than 300 varieties. ...

    Abstract Castanea sativa Mill. is a valuable species with historical and economic importance in Europe, particularly in the Mediterranean area. In Italy, chestnut cultivation has been developed for centuries, leading to the recognition of more than 300 varieties. Nevertheless, a profusion of local names has been assigned by growers, causing the occurrence of synonyms and homonyms across the country. This research focused on genetic characterization and identification using 21 single sequence repeats (SSRs) for four chestnut varieties (i.e., Pastinese, Nerattino, Carpinese, and Rossola) commonly used for flour production in the Tuscan Apennine Mountains (Pistoia Province). A comprehensive number of 55 accessions identified by local growers as belonging to the four varieties were analyzed, in addition to a few “Marrone” accessions as outgroups. The 21 microsatellites were highly informative, detecting 98 alleles and displaying an average polymorphism information content (PIC) equal to 0.582. In addition, a considerable amount of genetic diversity was revealed, as shown by the heterozygosity levels (He = 0.634 and Ho = 0.475). The STRUCTURE analysis provided clear distinctions among the different varieties, splitting them into four separate groups. This result was also confirmed by UPGMA dendrogram and principal co-ordinates analysis (PCoA). However, one accession (Carp_5), previously identified as Carpinese, showed an allelic profile attributable to Pastinese, suggesting that farmers might have performed mislabeling or grafting propagation errors. Thus, our results confirm the use of SSRs to allocate the accessions of different varieties, uncovering possible synonyms and homonyms. Specifically, in the context of the Pistoiese mountain region, this tool can favor the traceability of processed products, such as flour, enhancing the quality and economic value of the local market. Lastly, our findings have revealed a considerable genetic variability within the Tuscan chestnut varieties whose preservation is mandatory to face climate change challenges through sustainable forest management practices.
    Keywords Castanea sativa ; agronomy ; climate change ; economic valuation ; flour ; genetic variation ; heterozygosity ; markets ; microsatellite repeats ; sustainable forestry ; traceability ; Italy ; Mediterranean region
    Language English
    Dates of publication 2023-0723
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2607043-1
    ISSN 2073-4395
    ISSN 2073-4395
    DOI 10.3390/agronomy13071947
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: [No title information]

    Antonetti, Maurizio / Nin, Stefania / Burchi, Gianluca / Biricolti, Stefano / Gori, Massimo

    Plants (Basel, Switzerland)

    2021  Volume 10, Issue 1

    Abstract: Most cultivated orchids, contributing to a worldwide highly profitable industry, are originated from tropic regions. Conversely, a considerable number of spontaneous orchids, belonging to the terrestrial orchids and widely diffused throughout the ... ...

    Abstract Most cultivated orchids, contributing to a worldwide highly profitable industry, are originated from tropic regions. Conversely, a considerable number of spontaneous orchids, belonging to the terrestrial orchids and widely diffused throughout the European continent, are not considered for trading due to their less gorgeous appearance and for technical difficulties in seed propagation. However, a breeding programme was undertaken aimed at developing a new hybrid between
    Language English
    Publishing date 2021-01-06
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants10010107
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Himantoglossum adriaticum H. Baumann × Himantoglossum robertianum (Loisel.) P. Delforge: A New Interspecific Hybrid Assessed by Barcoding Analysis

    Antonetti, Maurizio / Nin, Stefania / Burchi, Gianluca / Biricolti, Stefano / Gori, Massimo

    Plants. 2021 Jan. 06, v. 10, no. 1

    2021  

    Abstract: Most cultivated orchids, contributing to a worldwide highly profitable industry, are originated from tropic regions. Conversely, a considerable number of spontaneous orchids, belonging to the terrestrial orchids and widely diffused throughout the ... ...

    Abstract Most cultivated orchids, contributing to a worldwide highly profitable industry, are originated from tropic regions. Conversely, a considerable number of spontaneous orchids, belonging to the terrestrial orchids and widely diffused throughout the European continent, are not considered for trading due to their less gorgeous appearance and for technical difficulties in seed propagation. However, a breeding programme was undertaken aimed at developing a new hybrid between Himantoglossum adriaticum H. Baumann and H. robertianum (Loisel.) P. Delforge [syn. Barlia robertiana (Loisel.) Greuter] by applying techniques of anther conservation, manual pollination and in vitro asymbiotic germination of the obtained seeds. The plantlets that originated from the protocorms after seed germination were successfully acclimatised after potting in a proper medium. The parentage of the progenies of the hybridisation experiment was assessed by sequencing the Internal Transcribed Spacer assembly (ITS) and plastid barcoding markers of the parental lines and of the hybrids. The method proved to be effective in revealing the origin of the hybrids and to validate the maternal inheritance of the plastid DNA.
    Keywords Himantoglossum robertianum ; appearance (quality) ; barcoding ; breeding programs ; hybridization ; hybrids ; industry ; internal transcribed spacers ; parentage ; plantlets ; plastid DNA ; pollination ; seed germination ; seeds ; Europe
    Language English
    Dates of publication 2021-0106
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    Note NAL-light
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants10010107
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Molecular Diversity within a Mediterranean and European Panel of Tetraploid Wheat (T. turgidum subsp.) Landraces and Modern Germplasm Inferred Using a High-Density SNP Array

    Ganugi, Paola / Palchetti, Enrico / Gori, Massimo / Calamai, Alessandro / Burridge, Amanda / Biricolti, Stefano / Benedettelli, Stefano / Masoni, Alberto

    Agronomy. 2021 Feb. 24, v. 11, no. 3

    2021  

    Abstract: High-density single-nucleotide polymorphism (SNP) molecular markers are widely used to assess the genetic variability of plant varieties and cultivars, which is nowadays recognized as an important source of well-adapted alleles for environmental stresses. ...

    Abstract High-density single-nucleotide polymorphism (SNP) molecular markers are widely used to assess the genetic variability of plant varieties and cultivars, which is nowadays recognized as an important source of well-adapted alleles for environmental stresses. In our study, the genetic diversity and population genetic structure of a collection of 265 accessions of eight tetraploid Triticumturgidum L. subspecies were investigated using 35,143 SNPs screened with a 35K Axiom® array. The neighbor-joining algorithm, discriminant analysis of principal components (DAPC), and the Bayesian model-based clustering algorithm implemented in STRUCTURE software revealed clusters in accordance with the taxonomic classification, reflecting the evolutionary history of the Triticum turgidum L. subspecies and the phylogenetic relationships among them. Based on these results, a clear picture of the population structure within a collection of tetraploid wheats is given herein. Moreover, the genetic potential of landraces and wild relatives for the research of specific traits of interest is highlighted. This research provides a great contribution to future phenotyping and crossing activities. In particular, the recombination efficiency and gene selection programs aimed at developing durum wheat composite cross populations that are adapted to Mediterranean conditions could be improved.
    Keywords Bayesian theory ; Triticum turgidum ; agronomy ; algorithms ; computer software ; cultivars ; discriminant analysis ; durum wheat ; genetic structure ; genetic traits ; genetic variation ; germplasm ; landraces ; phenotype ; phylogeny ; population structure ; single nucleotide polymorphism ; single nucleotide polymorphism arrays ; tetraploidy
    Language English
    Dates of publication 2021-0224
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 2607043-1
    ISSN 2073-4395
    ISSN 2073-4395
    DOI 10.3390/agronomy11030414
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: Histochemical observations in Piper malgassicum (Piperaceae) with a special focus on the epidermis

    Corti, Emilio / Palchetti, Enrico / Biricolti, Stefano / Gori, Massimo / Tani, Corrado / Squillace, Andrea / Pittella, Alexander / Papini, Alessio / Falsini, Sara

    Italian botanist. 2021 Sept. 24, v. 12

    2021  

    Abstract: This is the first contribution about the histochemistry of vegetative and reproductive aerial organs in the genus Piper L. Piper malgassicum accumulates alkaloids and terpenes in the epidermis and the underlying layers of parenchyma, both in the leaves, ... ...

    Abstract This is the first contribution about the histochemistry of vegetative and reproductive aerial organs in the genus Piper L. Piper malgassicum accumulates alkaloids and terpenes in the epidermis and the underlying layers of parenchyma, both in the leaves, in the stems and in anthers. Some idioblasts appear to contain a large amount of secondary metabolites. The micro-anatomical analysis showed peculiar secretory structures both in the leaves, in the anthers and in the ovary. Several lipid aggregates, alkaloid droplets and calcium oxalate crystals were observed in leaves and stems, indicating their role in defence strategies, mechanical support, and pollinators attraction. In the anthers, we observed elaioplasts whose content suggest an alternative and indirect function in pollination and defence against micro-organisms. Besides, some lipid aggregates surrounded by microtubules, detected in the anthers, were recognized as lipotubuloids. The tapetum was of secretory type. Alkaloids and terpenes were widely distributed in the plant confirming the important biological role of this type of biomolecules and its functional range. In the anthers, terpene and polyphenol inclusions appeared particularly abundant in the epidermal layer, whereas calcium oxalate crystals were observed close to the ovule in the ovary at maturity.
    Keywords Piper ; alkaloids ; botanists ; calcium oxalate ; elaioplasts ; histochemistry ; lipids ; microorganisms ; microtubules ; ovules ; pollination ; polyphenols ; secondary metabolites ; terpenoids
    Language English
    Dates of publication 2021-0924
    Size p. 29-47.
    Publishing place Pensoft Publishers
    Document type Article
    ISSN 2531-4033
    DOI 10.3897/italianbotanist.12.70675
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: Differential gene expression and chemical patterns of an intertidal crab inhabiting a polluted port and an adjacent marine protected area

    Baratti, Mariella / Pinosio, Sara / Gori, Massimo / Biricolti, Stefano / Chini, Giacomo / Fratini, Sara / Cannicci, Stefano / Caliani, Ilaria / Oliva, Matteo / De Marchi, Lucia / Pretti, Carlo

    Science of the total environment. 2022 May 20, v. 822

    2022  

    Abstract: The acquisition of data to safeguard marine protected areas located close to ports is important in order to develop plans that allow effective protection from pollution as well as sustainable development of the port. The area Secche della Meloria is a ... ...

    Abstract The acquisition of data to safeguard marine protected areas located close to ports is important in order to develop plans that allow effective protection from pollution as well as sustainable development of the port. The area Secche della Meloria is a Marine Protected Area (MPA-MEL) three miles from Livorno Harbour (LH), which is characterized by a long history of pollution. Here we studied the bioaccumulation and transcriptomic patterns of the marbled crab, Pachygrapsus marmoratus (Fabricius, 1787) (Crustacea; Brachyura, Grapsidae), inhabiting the two selected sites. Results showed that the two crab populations are significantly different in their chemical composition of trace elements and Polyciclic Aromatic Hydrocarbons (PAHs), and gene expression patterns (1280 DEGs). Enrichment analysis indicated that crabs at LH had the highest stress response genes, and they were associated with higher levels of bioaccumulation detected in body tissues. We are confident that the significant differential gene expression profiles observed between crabs, characterized by significant chemical differences, is associated with responses to contaminant exposure.
    Keywords Grapsidae ; bioaccumulation ; chemical composition ; crabs ; environment ; gene expression ; gene expression regulation ; littoral zone ; marine protected areas ; pollution ; stress response ; sustainable development ; transcriptomics
    Language English
    Dates of publication 2022-0520
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2022.153463
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Contrasting response mechanisms to root-zone salinity in three co-occurring Mediterranean woody evergreens: a physiological and biochemical study.

    Tattini, Massimiliano / Traversi, Maria Laura / Castelli, Silvana / Biricolti, Stefano / Guidi, Lucia / Massai, Rossano

    Functional plant biology : FPB

    2020  Volume 36, Issue 6, Page(s) 551–563

    Abstract: The present study investigated the extent to which physiological and biochemical traits varied because of root-zone salinity in three Mediterranean evergreens differing greatly in their strategies of salt allocation at an organismal level: the 'salt- ... ...

    Abstract The present study investigated the extent to which physiological and biochemical traits varied because of root-zone salinity in three Mediterranean evergreens differing greatly in their strategies of salt allocation at an organismal level: the 'salt-excluders', Olea europaea L. and Phillyrea latifolia L. (both Oleaceae), and Pistacia lentiscus L., which, instead, largely uses Na
    Language English
    Publishing date 2020-07-21
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 2071582-1
    ISSN 1445-4416 ; 1445-4408
    ISSN (online) 1445-4416
    ISSN 1445-4408
    DOI 10.1071/FP09054
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Genetic Purity of Cacao Criollo from Honduras Is Revealed by SSR Molecular Markers

    López, Marlon / Gori, Massimo / Bini, Lorenzo / Ordoñez, Erick / Durán, Erick / Gutierrez, Osman / Masoni, Alberto / Giordani, Edgardo / Biricolti, Stefano / Palchetti, Enrico

    Agronomy. 2021 Jan. 26, v. 11, no. 2

    2021  

    Abstract: The cultivation of cacao represents an income option and a source of employment for thousands of small producers in Central America. In Honduras, due to the demand for fine flavor cacao to produce high-quality chocolate, the number of hectares planted is ...

    Abstract The cultivation of cacao represents an income option and a source of employment for thousands of small producers in Central America. In Honduras, due to the demand for fine flavor cacao to produce high-quality chocolate, the number of hectares planted is increasing. In addition, cacao clones belonging to the genetic group named Criollo are in great demand since their white beans lack of bitterness and excellent aroma are used in the manufacturing of premium chocolate. Unfortunately, the low resistance to pests and diseases and less productive potential of Criollo cacao leads to the replacement with vigorous new cultivars belonging to the other genetic groups or admixture of them. In this study, 89 samples showing phenotypic traits of Criollo cacao from four regions of Honduras (Copán, Santa Bárbara, Intibucá, and Olancho) were selected to study their genetic purity using 16 SSR molecular markers. The results showed that some samples belong to the Criollo group while other accessions have genetic characteristics of “Trinitario” or other admixtures cacao types. These results confirm the genetic purity of Criollo cacao in Honduras, reaffirming the theory that Mesoamerica is a cacao domestication center and also serves to generate interest in the conservation of this genetic wealth both in-situ and ex-situ.
    Keywords agronomy ; bitterness ; chocolate ; cultivars ; domestication ; employment ; income ; odors ; phenotype ; Honduras
    Language English
    Dates of publication 2021-0126
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 2607043-1
    ISSN 2073-4395
    ISSN 2073-4395
    DOI 10.3390/agronomy11020225
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Differential gene expression and chemical patterns of an intertidal crab inhabiting a polluted port and an adjacent marine protected area.

    Baratti, Mariella / Pinosio, Sara / Gori, Massimo / Biricolti, Stefano / Chini, Giacomo / Fratini, Sara / Cannicci, Stefano / Caliani, Ilaria / Oliva, Matteo / De Marchi, Lucia / Pretti, Carlo

    The Science of the total environment

    2022  Volume 822, Page(s) 153463

    Abstract: The acquisition of data to safeguard marine protected areas located close to ports is important in order to develop plans that allow effective protection from pollution as well as sustainable development of the port. The area Secche della Meloria is a ... ...

    Abstract The acquisition of data to safeguard marine protected areas located close to ports is important in order to develop plans that allow effective protection from pollution as well as sustainable development of the port. The area Secche della Meloria is a Marine Protected Area (MPA-MEL) three miles from Livorno Harbour (LH), which is characterized by a long history of pollution. Here we studied the bioaccumulation and transcriptomic patterns of the marbled crab, Pachygrapsus marmoratus (Fabricius, 1787) (Crustacea; Brachyura, Grapsidae), inhabiting the two selected sites. Results showed that the two crab populations are significantly different in their chemical composition of trace elements and Polyciclic Aromatic Hydrocarbons (PAHs), and gene expression patterns (1280 DEGs). Enrichment analysis indicated that crabs at LH had the highest stress response genes, and they were associated with higher levels of bioaccumulation detected in body tissues. We are confident that the significant differential gene expression profiles observed between crabs, characterized by significant chemical differences, is associated with responses to contaminant exposure.
    MeSH term(s) Animals ; Brachyura/genetics ; Seafood ; Transcriptome ; Water Pollutants, Chemical/metabolism
    Chemical Substances Water Pollutants, Chemical
    Language English
    Publishing date 2022-01-29
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2022.153463
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Effect of ammonia on the gene expression levels of the freshwater cyclopoid Eucyclops serrulatus.

    Di Lorenzo, Tiziana / Melita, Marco / Cifoni, Marco / Galassi, Diana M P / Iannucci, Alessio / Biricolti, Stefano / Gori, Massimo / Baratti, Mariella

    Environmental toxicology and pharmacology

    2017  Volume 51, Page(s) 138–141

    Abstract: Ammonia pollution is a critical issue in Europe, since more than half of the European freshwater bodies actually fail to meet EU quality standards for this chemical. In this study, the response of stress-related genes to a sublethal ammonia concentration ...

    Abstract Ammonia pollution is a critical issue in Europe, since more than half of the European freshwater bodies actually fail to meet EU quality standards for this chemical. In this study, the response of stress-related genes to a sublethal ammonia concentration has been investigated in the adults of the freshwater cyclopoid Eucyclops serrulatus. Two short-term exposures (12h and 24h) at 12mg/L NH
    MeSH term(s) Ammonia/toxicity ; Animals ; Catalase/genetics ; Copepoda/drug effects ; Copepoda/genetics ; Environmental Monitoring ; Fresh Water/chemistry ; Gene Expression/drug effects ; HSP40 Heat-Shock Proteins/genetics ; HSP90 Heat-Shock Proteins/genetics ; Italy ; Water Pollutants, Chemical/toxicity
    Chemical Substances HSP40 Heat-Shock Proteins ; HSP90 Heat-Shock Proteins ; Water Pollutants, Chemical ; Ammonia (7664-41-7) ; Catalase (EC 1.11.1.6)
    Language English
    Publishing date 2017-04
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2015938-9
    ISSN 1872-7077 ; 1382-6689
    ISSN (online) 1872-7077
    ISSN 1382-6689
    DOI 10.1016/j.etap.2017.02.017
    Database MEDical Literature Analysis and Retrieval System OnLINE

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