LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 24

Search options

  1. Article: Innate Immune Activation and Mitochondrial ROS Invoke Persistent Cardiac Conduction System Dysfunction after COVID-19.

    Ashok, Deepthi / Liu, Ting / Criscione, Joseph / Prakash, Meghana / Kim, Byunggik / Chow, Julian / Craney, Morgan / Papanicolaou, Kyriakos N / Sidor, Agnieszka / Brian Foster, D / Pekosz, Andrew / Villano, Jason / Kim, Deok-Ho / O'Rourke, Brian

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Background: Cardiac risk rises during acute SARS-CoV-2 infection and in long COVID syndrome in humans, but the mechanisms behind COVID-19-linked arrhythmias are unknown. This study explores the acute and long term effects of SARS-CoV-2 on the cardiac ... ...

    Abstract Background: Cardiac risk rises during acute SARS-CoV-2 infection and in long COVID syndrome in humans, but the mechanisms behind COVID-19-linked arrhythmias are unknown. This study explores the acute and long term effects of SARS-CoV-2 on the cardiac conduction system (CCS) in a hamster model of COVID-19.
    Methods: Radiotelemetry in conscious animals was used to non-invasively record electrocardiograms and subpleural pressures after intranasal SARS-CoV-2 infection. Cardiac cytokines, interferon-stimulated gene expression, and macrophage infiltration of the CCS, were assessed at 4 days and 4 weeks post-infection. A double-stranded RNA mimetic, polyinosinic:polycytidylic acid (PIC), was used in vivo and in vitro to activate viral pattern recognition receptors in the absence of SARS-CoV-2 infection.
    Results: COVID-19 induced pronounced tachypnea and severe cardiac conduction system (CCS) dysfunction, spanning from bradycardia to persistent atrioventricular block, although no viral protein expression was detected in the heart. Arrhythmias developed rapidly, partially reversed, and then redeveloped after the pulmonary infection was resolved, indicating persistent CCS injury. Increased cardiac cytokines, interferon-stimulated gene expression, and macrophage remodeling in the CCS accompanied the electrophysiological abnormalities. Interestingly, the arrhythmia phenotype was reproduced by cardiac injection of PIC in the absence of virus, indicating that innate immune activation was sufficient to drive the response. PIC also strongly induced cytokine secretion and robust interferon signaling in hearts, human iPSC-derived cardiomyocytes (hiPSC-CMs), and engineered heart tissues, accompanied by alterations in electrical and Ca
    Conclusions: The findings indicate that long term dysfunction and immune cell remodeling of the CCS is induced by COVID-19, arising indirectly from oxidative stress and excessive activation of cardiac innate immune responses during infection, with implications for long COVID Syndrome.
    Language English
    Publishing date 2024-01-08
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.01.05.574280
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: METABOLISM LEAVES ITS MARK ON THE POWERHOUSE

    D. BrianFoster

    Frontiers in Physiology, Vol

    RECENT PROGRESS IN POST-TRANSLATIONAL MODIFICATIONS OF LYSINE IN MITOCHONDRIA

    2014  Volume 5

    Abstract: Lysine modifications have been studied extensively in the nucleus, where they play pivotal roles in gene regulation and constitute one of the pillars of epigenetics. In the cytoplasm, they are critical to proteostasis. However, in the last decade we have ...

    Abstract Lysine modifications have been studied extensively in the nucleus, where they play pivotal roles in gene regulation and constitute one of the pillars of epigenetics. In the cytoplasm, they are critical to proteostasis. However, in the last decade we have also witnessed the emergence of mitochondria as prime locus for post-translational modification of lysine thanks, in large measure, to evolving proteomic techniques. Here, were we review recent work on evolving set of post-translational modifications that arise from the direct reaction of lysine residues with energized metabolic thioester-coenzyme A intermediates, including acetylation, succinylation, malonylation and glutarylation. We highlight the evolutionary conservation, kinetics, stoichiometry and cross-talk between members of this emerging family of PTMs. We examine the impact on target protein function and regulation by mitochondrial sirtuins. Finally, we spotlight work in the heart and cardiac mitochondria, and consider the roles acetylation and other newly-found modifications may play in heart disease.
    Keywords Acetylation ; Heart ; SIRTUIN ; sirt3 ; succinylation ; malonylation ; glutarylation ; butyrylation ; propionylation ; crotonylation ; Sirt5 ; Physiology ; QP1-981 ; Science ; Q
    Language English
    Publishing date 2014-09-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  3. Article ; Online: Innate Immune Activation and Mitochondrial ROS Invoke Persistent Cardiac Conduction System Dysfunction after COVID-19

    Ashok, Deepthi / Liu, Ting / Criscione, Joseph / Prakash, Meghana / Kim, Byunggik / Chow, Julian / Craney, Morgan / Papanicolaou, Kyriakos N. / Sidor, Agnieszka / Brian Foster, D. / Pekosz, Andrew / Villano, Jason / Kim, Deok-Ho / O’Rourke, Brian

    bioRxiv

    Abstract: Background: Cardiac risk rises during acute SARS-CoV-2 infection and in long COVID syndrome in humans, but the mechanisms behind COVID-19-linked arrhythmias are unknown. This study explores the acute and long term effects of SARS-CoV-2 on the cardiac ... ...

    Abstract Background: Cardiac risk rises during acute SARS-CoV-2 infection and in long COVID syndrome in humans, but the mechanisms behind COVID-19-linked arrhythmias are unknown. This study explores the acute and long term effects of SARS-CoV-2 on the cardiac conduction system (CCS) in a hamster model of COVID-19. Methods: Radiotelemetry in conscious animals was used to non-invasively record electrocardiograms and subpleural pressures after intranasal SARS-CoV-2 infection. Cardiac cytokines, interferon-stimulated gene expression, and macrophage infiltration of the CCS, were assessed at 4 days and 4 weeks post-infection. A double-stranded RNA mimetic, polyinosinic:polycytidylic acid (PIC), was used in vivo and in vitro to activate viral pattern recognition receptors in the absence of SARS-CoV-2 infection. Results: COVID-19 induced pronounced tachypnea and severe cardiac conduction system (CCS) dysfunction, spanning from bradycardia to persistent atrioventricular block, although no viral protein expression was detected in the heart. Arrhythmias developed rapidly, partially reversed, and then redeveloped after the pulmonary infection was resolved, indicating persistent CCS injury. Increased cardiac cytokines, interferon-stimulated gene expression, and macrophage remodeling in the CCS accompanied the electrophysiological abnormalities. Interestingly, the arrhythmia phenotype was reproduced by cardiac injection of PIC in the absence of virus, indicating that innate immune activation was sufficient to drive the response. PIC also strongly induced cytokine secretion and robust interferon signaling in hearts, human iPSC-derived cardiomyocytes (hiPSC-CMs), and engineered heart tissues, accompanied by alterations in electrical and Ca2+ handling properties. Importantly, the pulmonary and cardiac effects of COVID-19 were blunted by in vivo inhibition of JAK/STAT signaling or by a mitochondrially-targeted antioxidant. Conclusions: The findings indicate that long term dysfunction and immune cell remodeling of the CCS is induced by COVID-19, arising indirectly from oxidative stress and excessive activation of cardiac innate immune responses during infection, with implications for long COVID Syndrome.
    Keywords covid19
    Language English
    Publishing date 2024-01-08
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2024.01.05.574280
    Database COVID19

    Kategorien

  4. Article ; Online: Evidence-Based Approach of Biologic Therapy in Bronchial Asthma

    Adnan Liaqat / Mathew Mason / Brian Foster / Grant Gregory / Avani Patel / Aisha Barlas / Sagar Kulkarni / Rafaela Basso / Pooja Patak / Hamza Liaqat / Muhammad Qureshi / Abdelrahman Shehata / Yousef Awad / Mina Ghaly / Qamar Gulzar / Walter Doty

    Journal of Clinical Medicine, Vol 12, Iss 4321, p

    2023  Volume 4321

    Abstract: The emergence of biologic agents in the treatment of bronchial asthma has a wide impact on improving quality of life, reducing morbidity, and overall health care utilization. These therapies usually work by targeting specific inflammatory pathways ... ...

    Abstract The emergence of biologic agents in the treatment of bronchial asthma has a wide impact on improving quality of life, reducing morbidity, and overall health care utilization. These therapies usually work by targeting specific inflammatory pathways involving type 2 inflammation and are particularly effective in severe eosinophilic asthma. Various randomized controlled trials have shown their effectiveness by reducing exacerbation rates and decreasing required glucocorticoid dosages. One of the relatively newer agents, tezepelumab, targets thymic stromal lymphoprotein and has proven its efficacy in patients independent of asthma phenotype and serum biomarker levels. This article reviews the pathophysiologic mechanism behind biologic therapy and offers an evidence-based discussion related to the indication, benefits, and adverse effects of such therapies.
    Keywords asthma ; omalizumab ; reslizumab ; benralizumab ; mepolizumab ; dupilumab ; Medicine ; R
    Subject code 610
    Language English
    Publishing date 2023-06-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  5. Article ; Online: Induced cardiac pacemaker cells survive metabolic stress owing to their low metabolic demand

    Jin-mo Gu / Sandra I. Grijalva / Natasha Fernandez / Elizabeth Kim / D. Brian Foster / Hee Cheol Cho

    Experimental and Molecular Medicine, Vol 51, Iss 9, Pp 1-

    2019  Volume 12

    Abstract: ... metabolic state further, Hee Cheol Cho at Emory University, Atlanta, and Brian Foster at Johns Hopkins ...

    Abstract Heart health: understanding pacemaker cells The heart’s pacemaker cells contain mitochondria that are smaller than average and require less energy than other heart cells, properties that help make them naturally resilient to stress. Cardiac pacemaker cells constitute a tiny proportion of the heart’s cells, yet play a critical role in maintaining a steady heartbeat. However, quite how pacemaker cells maintain their automatic rhythm is unclear because their scarcity makes them difficult to study. To examine the cells’ metabolic state further, Hee Cheol Cho at Emory University, Atlanta, and Brian Foster at Johns Hopkins University School of Medicine, Baltimore, and co-workers therefore induced pacemaker cells by adding an embryonic protein to heart muscle cells. The induced pacemaker cells survived well under oxidative stress. The team identified a protein in the pacemakers’ mitochondrial membranes, the expression of which directly influences rhythm responses.
    Keywords Medicine ; R ; Biochemistry ; QD415-436
    Subject code 610
    Language English
    Publishing date 2019-09-01T00:00:00Z
    Publisher Nature Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  6. Article ; Online: New spinosaurids from the Wessex Formation (Early Cretaceous, UK) and the European origins of Spinosauridae

    Chris T. Barker / David W. E. Hone / Darren Naish / Andrea Cau / Jeremy A. F. Lockwood / Brian Foster / Claire E. Clarkin / Philipp Schneider / Neil J. Gostling

    Scientific Reports, Vol 11, Iss 1, Pp 1-

    2021  Volume 15

    Abstract: Abstract Spinosaurids are among the most distinctive and yet poorly-known of large-bodied theropod dinosaurs, a situation exacerbated by their mostly fragmentary fossil record and competing views regarding their palaeobiology. Here, we report two new ... ...

    Abstract Abstract Spinosaurids are among the most distinctive and yet poorly-known of large-bodied theropod dinosaurs, a situation exacerbated by their mostly fragmentary fossil record and competing views regarding their palaeobiology. Here, we report two new Early Cretaceous spinosaurid specimens from the Wessex Formation (Barremian) of the Isle of Wight. Large-scale phylogenetic analyses using parsimony and Bayesian techniques recover the pair in a new clade within Baryonychinae that also includes the hypodigm of the African spinosaurid Suchomimus. Both specimens represent distinct and novel taxa, herein named Ceratosuchops inferodios gen. et sp. nov. and Riparovenator milnerae gen. et sp. nov. A palaeogeographic reconstruction suggests a European origin for Spinosauridae, with at least two dispersal events into Africa. These new finds provide welcome information on poorly sampled areas of spinosaurid anatomy, suggest that sympatry was present and potentially common in baryonychines and spinosaurids as a whole, and contribute to updated palaeobiogeographic reconstructions for the clade.
    Keywords Medicine ; R ; Science ; Q
    Subject code 590
    Language English
    Publishing date 2021-09-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  7. Article ; Online: Cardiac retinoic acid levels decline in heart failure

    Ni Yang / Lauren E. Parker / Jianshi Yu / Jace W. Jones / Ting Liu / Kyriakos N. Papanicolaou / C. Conover Talbot Jr. / Kenneth B. Margulies / Brian O’Rourke / Maureen A. Kane / D. Brian Foster

    JCI Insight, Vol 6, Iss

    2021  Volume 8

    Abstract: Although low circulating levels of the vitamin A metabolite, all-trans retinoic acid (ATRA), are associated with increased risk of cardiovascular events and all-cause mortality, few studies have addressed whether cardiac retinoid levels are altered in ... ...

    Abstract Although low circulating levels of the vitamin A metabolite, all-trans retinoic acid (ATRA), are associated with increased risk of cardiovascular events and all-cause mortality, few studies have addressed whether cardiac retinoid levels are altered in the failing heart. Here, we showed that proteomic analyses of human and guinea pig heart failure (HF) were consistent with a decline in resident cardiac ATRA. Quantitation of the retinoids in ventricular myocardium by mass spectrometry revealed 32% and 39% ATRA decreases in guinea pig HF and in patients with idiopathic dilated cardiomyopathy (IDCM), respectively, despite ample reserves of cardiac vitamin A. ATRA (2 mg/kg/d) was sufficient to mitigate cardiac remodeling and prevent functional decline in guinea pig HF. Although cardiac ATRA declined in guinea pig HF and human IDCM, levels of certain retinoid metabolic enzymes diverged. Specifically, high expression of the ATRA-catabolizing enzyme, CYP26A1, in human IDCM could dampen prospects for an ATRA-based therapy. Pertinently, a pan-CYP26 inhibitor, talarozole, blunted the impact of phenylephrine on ATRA decline and hypertrophy in neonatal rat ventricular myocytes. Taken together, we submit that low cardiac ATRA attenuates the expression of critical ATRA-dependent gene programs in HF and that strategies to normalize ATRA metabolism, like CYP26 inhibition, may have therapeutic potential.
    Keywords Cardiology ; Medicine ; R
    Subject code 610
    Language English
    Publishing date 2021-04-01T00:00:00Z
    Publisher American Society for Clinical investigation
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  8. Article: Surface characterization of nitrogen-doped Nb (100) large-grain superconducting RF cavity material

    Dangwal Pandey, Arti / Guilherme Dalla Lana Semione / Alena Prudnikava / Thomas F. Keller / Heshmat Noei / Vedran Vonk / Yegor Tamashevich / Eckhard Elsen / Brian Foster / Andreas Stierle

    Journal of materials science. 2018 July, v. 53, no. 14

    2018  

    Abstract: 100) Oriented niobium (Nb) crystals annealed in the vacuum conditions close to that used in mass production of 1.3 GHz superconducting radio frequency cavities for linear accelerators and treated in nitrogen at a partial pressure of 0.04 mbar at ... ...

    Abstract (100) Oriented niobium (Nb) crystals annealed in the vacuum conditions close to that used in mass production of 1.3 GHz superconducting radio frequency cavities for linear accelerators and treated in nitrogen at a partial pressure of 0.04 mbar at temperatures of 800 and 900 °C have been studied. The surfaces of the nitrogen-treated samples were investigated by means of various surface-sensitive techniques, including grazing-incidence X-ray diffraction, X-ray photoemission spectroscopy, and scanning electron microscopy with energy-dispersive X-ray spectroscopy in planar view and on cross-sections prepared by a focused ion beam. The appearance of a dense layer of epitaxial rectangular precipitates has been observed for the Niobium nitrided at 900 °C. Increased nitrogen concentration in the near-surface region was detected by glow-discharge optical-emission spectroscopy, focused ion-beam cross-sectional images and X-ray photoelectron spectroscopy. Crystalline phases of NbO and β-Nb₂N were identified by X-ray diffraction. This information was confirmed by X-ray photoelectron measurements, which in addition revealed the presence of Nb₂O₅, NbON, NbN, and NbN ₓ O y components on the surface. These results establish the near-surface Nb phase composition after high-temperature nitrogen treatment, which is important for obtaining a better understanding of the improved RF cavity performance.
    Keywords X-radiation ; X-ray diffraction ; X-ray photoelectron spectroscopy ; crystals ; energy-dispersive X-ray analysis ; niobium ; nitrogen ; nitrogen content ; radio waves ; scanning electron microscopy ; temperature
    Language English
    Dates of publication 2018-07
    Size p. 10411-10422.
    Publishing place Springer US
    Document type Article
    ZDB-ID 2015305-3
    ISSN 1573-4803 ; 0022-2461
    ISSN (online) 1573-4803
    ISSN 0022-2461
    DOI 10.1007/s10853-018-2310-8
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  9. Article ; Online: A single-cell genomics pipeline for environmental microbial eukaryotes

    Doina Ciobanu / Alicia Clum / Steven Ahrendt / William B. Andreopoulos / Asaf Salamov / Sandy Chan / C. Alisha Quandt / Brian Foster / Jan P. Meier-Kolthoff / Yung Tsu Tang / Patrick Schwientek / Gerald L. Benny / Matthew E. Smith / Diane Bauer / Shweta Deshpande / Kerrie Barry / Alex Copeland / Steven W. Singer / Tanja Woyke /
    Igor V. Grigoriev / Timothy Y. James / Jan-Fang Cheng

    iScience, Vol 24, Iss 4, Pp 102290- (2021)

    2021  

    Abstract: Summary: Single-cell sequencing of environmental microorganisms is an essential component of the microbial ecology toolkit. However, large-scale targeted single-cell sequencing for the whole-genome recovery of uncultivated eukaryotes is lagging. The key ... ...

    Abstract Summary: Single-cell sequencing of environmental microorganisms is an essential component of the microbial ecology toolkit. However, large-scale targeted single-cell sequencing for the whole-genome recovery of uncultivated eukaryotes is lagging. The key challenges are low abundance in environmental communities, large complex genomes, and cell walls that are difficult to break. We describe a pipeline composed of state-of-the art single-cell genomics tools and protocols optimized for poorly studied and uncultivated eukaryotic microorganisms that are found at low abundance. This pipeline consists of seven distinct steps, beginning with sample collection and ending with genome annotation, each equipped with quality review steps to ensure high genome quality at low cost. We tested and evaluated each step on environmental samples and cultures of early-diverging lineages of fungi and Chromista/SAR. We show that genomes produced using this pipeline are almost as good as complete reference genomes for functional and comparative genomics for environmental microbial eukaryotes.
    Keywords Genomics ; Geomicrobiology ; Microbiology ; Science ; Q
    Subject code 333
    Language English
    Publishing date 2021-04-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  10. Article ; Online: Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

    Bin Hu / Shane Canon / Emiley A. Eloe-Fadrosh / Anubhav / Michal Babinski / Yuri Corilo / Karen Davenport / William D. Duncan / Kjiersten Fagnan / Mark Flynn / Brian Foster / David Hays / Marcel Huntemann / Elais K. Player Jackson / Julia Kelliher / Po-E. Li / Chien-Chi Lo / Douglas Mans / Lee Ann McCue /
    Nigel Mouncey / Christopher J. Mungall / Paul D. Piehowski / Samuel O. Purvine / Montana Smith / Neha Jacob Varghese / Donald Winston / Yan Xu / Patrick S. G. Chain

    Frontiers in Bioinformatics, Vol

    2022  Volume 1

    Abstract: The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number of new tools ... ...

    Abstract The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number of new tools and algorithms have been designed and used for very specific purposes on samples collected by individual investigators or groups. While these developments have been quite instructive, the ability to compare microbiome data generated by many groups of researchers is impeded by the lack of standardized application of bioinformatics methods. Additionally, there are few examples of broad bioinformatics workflows that can process metagenome, metatranscriptome, metaproteome and metabolomic data at scale, and no central hub that allows processing, or provides varied omics data that are findable, accessible, interoperable and reusable (FAIR). Here, we review some of the challenges that exist in analyzing omics data within the microbiome research sphere, and provide context on how the National Microbiome Data Collaborative has adopted a standardized and open access approach to address such challenges.
    Keywords microbiome ; microbial ecology ; omics ; bioinformatics ; infrastructure ; Computer applications to medicine. Medical informatics ; R858-859.7
    Subject code 020
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

To top