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  1. Article ; Online: Errors in soil maps: The need for better on-site estimates and soil map predictions.

    Buenemann, Michaela / Coetzee, Marina E / Kutuahupira, Josephat / Maynard, Jonathan J / Herrick, Jeffrey E

    PloS one

    2023  Volume 18, Issue 1, Page(s) e0270176

    Abstract: High-quality soil maps are urgently needed by diverse stakeholders, but errors in existing soil maps are often unknown, particularly in countries with limited soil surveys. To address this issue, we used field soil data to assess the accuracy of seven ... ...

    Abstract High-quality soil maps are urgently needed by diverse stakeholders, but errors in existing soil maps are often unknown, particularly in countries with limited soil surveys. To address this issue, we used field soil data to assess the accuracy of seven spatial soil databases (Digital Soil Map of the World, Namibian Soil and Terrain Digital Database, Soil and Terrain Database for Southern Africa, Harmonized World Soil Database, SoilGrids1km, SoilGrids250m, and World Inventory of Soil Property Estimates) using topsoil texture as an example soil property and Namibia as a case study area. In addition, we visually compared topsoil texture maps derived from these databases. We found that the maps showed the correct topsoil texture in only 13% to 42% of all test sites, with substantial confusion occurring among all texture categories, not just those in close proximity in the soil texture triangle. Visual comparisons of the maps moreover showed that the maps differ greatly with respect to the number, types, and spatial distribution of texture classes. The topsoil texture information provided by the maps is thus sufficiently inaccurate that it would result in significant errors in a number of applications, including irrigation system design and predictions of potential forage and crop productivity, water runoff, and soil erosion. Clearly, the use of these existing maps for policy- and decision-making is highly questionable and there is a critical need for better on-site estimates and soil map predictions. We propose that mobile apps, citizen science, and crowdsourcing can help meet this need.
    MeSH term(s) Soil ; Soil Erosion ; Databases, Factual ; Africa, Southern ; Namibia
    Chemical Substances Soil
    Language English
    Publishing date 2023-01-11
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0270176
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Morphologic and Genetic Characterization of Ilheus Virus, a Potential Emergent Flavivirus in the Americas.

    Plante, Jessica A / Plante, Kenneth S / Popov, Vsevolod L / Shinde, Divya P / Widen, Steven G / Buenemann, Michaela / Nogueira, Mauricio L / Vasilakis, Nikos

    Viruses

    2023  Volume 15, Issue 1

    Abstract: Ilheus virus (ILHV) is a mosquito-borne flavivirus circulating throughout Central and South America and the Caribbean. It has been detected in several mosquito genera ... ...

    Abstract Ilheus virus (ILHV) is a mosquito-borne flavivirus circulating throughout Central and South America and the Caribbean. It has been detected in several mosquito genera including
    MeSH term(s) Animals ; Flavivirus/genetics ; Culex ; Aedes ; South America ; Caribbean Region ; Phylogeny
    Language English
    Publishing date 2023-01-10
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v15010195
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Shifts in mosquito diversity and abundance along a gradient from oil palm plantations to conterminous forests in Borneo

    Young, Katherine I / Buenemann, Michaela / Vasilakis, Nikos / Perera, David / Hanley, Kathryn A

    Ecosphere. 2021 Apr., v. 12, no. 4

    2021  

    Abstract: Deforestation precipitates spillover of enzootic, vector‐borne viruses into humans, but specific mechanisms for this effect have rarely been investigated. Expansion of oil palm cultivation is a major driver of deforestation. Here, we demonstrate that ... ...

    Abstract Deforestation precipitates spillover of enzootic, vector‐borne viruses into humans, but specific mechanisms for this effect have rarely been investigated. Expansion of oil palm cultivation is a major driver of deforestation. Here, we demonstrate that mosquito abundance decreased over ten stepwise distances from interior forest into conterminous palm plantations in Borneo. Diversity in interior plantation narrowed to one species, Aedes albopictus, a potential bridge vector for spillover of multiple viruses. A. albopictus was equally abundant across all distances in forests, forest‐plantation edge, and plantations, while A. niveus, a known vector of sylvatic dengue virus, was found only in forests. A. albopictus collections were significantly female‐biased in plantation but not in edge or forest. Our data reveal that the likelihood of encountering any mosquito is greater in interior forest and edge than plantation, while the likelihood of encountering A. albopictus is equivalent across the gradient sampled from interior plantation to interior forest.
    Keywords Aedes albopictus ; Borneo ; Dengue virus ; Elaeis guineensis ; deforestation ; enzootic diseases ; forests
    Language English
    Dates of publication 2021-04
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note NAL-AP-2-clean ; JOURNAL ARTICLE
    ZDB-ID 2572257-8
    ISSN 2150-8925
    ISSN 2150-8925
    DOI 10.1002/ecs2.3463
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: Shifts in mosquito diversity and abundance along a gradient from oil palm plantations to conterminous forests in Borneo.

    Young, Katherine I / Buenemann, Michaela / Vasilakis, Nikos / Perera, David / Hanley, Kathryn A

    Ecosphere (Washington, D.C)

    2021  Volume 12, Issue 4

    Abstract: Deforestation precipitates spillover of enzootic, vector-borne viruses into humans, but specific mechanisms for this effect have rarely been investigated. Expansion of oil palm cultivation is a major driver of deforestation. Here, we demonstrate that ... ...

    Abstract Deforestation precipitates spillover of enzootic, vector-borne viruses into humans, but specific mechanisms for this effect have rarely been investigated. Expansion of oil palm cultivation is a major driver of deforestation. Here, we demonstrate that mosquito abundance decreased over ten stepwise distances from interior forest into conterminous palm plantations in Borneo. Diversity in interior plantation narrowed to one species,
    Language English
    Publishing date 2021-04-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2572257-8
    ISSN 2150-8925
    ISSN 2150-8925
    DOI 10.1002/ecs2.3463
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Forest edge landscape context affects mosquito community composition and risk of pathogen emergence.

    Hendy, Adam / Fé, Nelson Ferreira / Pedrosa, Igor / Girão, André / Figueira Dos Santos, Taly Nayandra / Mendonça, Claudia Reis / Andes Júnior, José Tenaçol / Assunção, Flamarion Prado / Costa, Edson Rodrigues / Sluydts, Vincent / Gordo, Marcelo / Scarpassa, Vera Margarete / Buenemann, Michaela / de Lacerda, Marcus Vinícius Guimarães / Mourão, Maria Paula Gomes / Vasilakis, Nikos / Hanley, Kathryn A

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Forest edges, where humans, mosquitoes, and wildlife interact, may serve as a nexus for zoonotic arbovirus exchange. Although often treated as uniform interfaces, the landscape context of edge habitats can greatly impact ecological interactions. Here, we ...

    Abstract Forest edges, where humans, mosquitoes, and wildlife interact, may serve as a nexus for zoonotic arbovirus exchange. Although often treated as uniform interfaces, the landscape context of edge habitats can greatly impact ecological interactions. Here, we investigated how the landscape context of forest edges shapes mosquito community structure in an Amazon rainforest reserve near the city of Manaus, Brazil, using hand-nets to sample mosquitoes at three distinct forest edge types. Sampling sites were situated at edges bordering urban land cover, rural land cover, and natural treefall gaps, while sites in continuous forest served as controls. Community composition differed substantially among edge types, with rural edges supporting the highest species diversity. Rural edges also provided suitable habitat for forest specialists, including key sylvatic vectors, of which
    Language English
    Publishing date 2024-05-03
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.04.30.591911
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Where boundaries become bridges: Mosquito community composition, key vectors, and environmental associations at forest edges in the central Brazilian Amazon.

    Hendy, Adam / Hernandez-Acosta, Eduardo / Valério, Danielle / Fé, Nelson Ferreira / Mendonça, Claudia Reis / Costa, Edson Rodrigues / Andrade, Eloane Silva de / Andes Júnior, José Tenaçol / Assunção, Flamarion Prado / Scarpassa, Vera Margarete / Lacerda, Marcus Vinícius Guimarães de / Buenemann, Michaela / Vasilakis, Nikos / Hanley, Kathryn A

    PLoS neglected tropical diseases

    2023  Volume 17, Issue 4, Page(s) e0011296

    Abstract: Risk of spillover and spillback of mosquito-borne viruses in the neotropics, including yellow fever, dengue, Zika (Flaviviridae: Flavivirus), chikungunya, and Mayaro (Togaviridae: Alphavirus) viruses, is highest at ecotones where humans, monkeys, and ... ...

    Abstract Risk of spillover and spillback of mosquito-borne viruses in the neotropics, including yellow fever, dengue, Zika (Flaviviridae: Flavivirus), chikungunya, and Mayaro (Togaviridae: Alphavirus) viruses, is highest at ecotones where humans, monkeys, and mosquitoes coexist. With a view to identifying potential bridge vectors, we investigated changes in mosquito community composition and environmental variables at ground level at distances of 0, 500, 1000, and 2000 m from the edge of a rainforest reserve bordering the city of Manaus in the central Brazilian Amazon. During two rainy seasons in 2019 and 2020, we sampled 9,467 mosquitoes at 244 unique sites using BG-Sentinel traps, hand-nets, and Prokopack aspirators. Species richness and diversity were generally higher at 0 m and 500 m than at 1000 m and 2000 m, while mosquito community composition changed considerably between the forest edge and 500 m before stabilizing by 1000 m. Shifts in environmental variables mainly occurred between the edge and 500 m, and the occurrence of key taxa (Aedes albopictus, Ae. scapularis, Limatus durhamii, Psorophora amazonica, Haemagogus, and Sabethes) was associated with one or more of these variables. Sites where Ae. aegypti and Ae. albopictus were detected had significantly higher surrounding mean NDBI (Normalized Difference Built-up Index) values than sites where they were not detected, while the opposite was true for Sabethes mosquitoes. Our findings suggest that major changes in mosquito communities and environmental variables occur within 500 m of the forest edge, where there is high risk for contact with both urban and sylvatic vectors. By 1000 m, conditions stabilize, species diversity decreases, and forest mosquitoes predominate. Environmental variables associated with the occurrence of key taxa may be leveraged to characterize suitable habitat and refine risk models for pathogen spillover and spillback.
    MeSH term(s) Humans ; Animals ; Brazil ; Mosquito Vectors ; Forests ; Aedes ; Ecosystem ; Flavivirus ; Zika Virus ; Zika Virus Infection
    Language English
    Publishing date 2023-04-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2429704-5
    ISSN 1935-2735 ; 1935-2735
    ISSN (online) 1935-2735
    ISSN 1935-2735
    DOI 10.1371/journal.pntd.0011296
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Detection of Zika Virus in

    Gomes, Erika Oliveira / Sacchetto, Lívia / Teixeira, Maurício / Chaves, Bárbara Aparecida / Hendy, Adam / Mendonça, Claudia / Guimarães, Izabele / Linhares, Ramon / Brito, Daniela / Valério, Danielle / Cordeiro, Jady Shayenne Mota / Neto, Alexandre Vilhena Silva / Sampaio, Vanderson Souza / Scarpassa, Vera Margarete / Buenemann, Michaela / Vasilakis, Nikos / Baia-da-Silva, Djane Clarys / Nogueira, Maurício Lacerda / Mourão, Maria Paula Gomes /
    Lacerda, Marcus Vinícius Guimarães

    Viruses

    2023  Volume 15, Issue 6

    Abstract: Zika virus (ZIKV) is an RNA flavivirus ( ...

    Abstract Zika virus (ZIKV) is an RNA flavivirus (
    MeSH term(s) Humans ; Animals ; Female ; Zika Virus/genetics ; Zika Virus Infection ; Aedes ; Brazil/epidemiology ; Mosquito Vectors
    Language English
    Publishing date 2023-06-12
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v15061356
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Long-Term Tree Cover Dynamics in a Pinyon-Juniper Woodland: Climate-Change-Type Drought Resets Successional Clock

    Clifford, Michael J / Cobb, Neil S / Buenemann, Michaela

    Ecosystems. 2011 Sept., v. 14, no. 6

    2011  

    Abstract: Woody vegetation has expanded in coverage over the past century in many places globally, exemplified by pinyon-juniper changes in the Southwestern United States. Extreme drought is one of the few non-management drivers besides fire that might reverse ... ...

    Abstract Woody vegetation has expanded in coverage over the past century in many places globally, exemplified by pinyon-juniper changes in the Southwestern United States. Extreme drought is one of the few non-management drivers besides fire that might reverse such cover changes, but this has not been well documented. Here, we assess 68 years of tree cover dynamics across an elevation gradient of a pinyon-juniper woodland using aerial photographs (1936 and 1959) and QuickBird imagery (2004). Canopy cover increased 32% from 1936 to the onset of a major drought (2002). The largest relative increase in canopy cover occurred from 1936 to 1959 at the higher elevations, but these gains were eliminated by fires occurring from 1959 to 2002, during which time lower elevations with low canopy cover exhibited the greatest relative increases. The 2002–2004 drought reduced canopy cover by 55%, which eliminated gains in cover that occurred since 1936. Relative tree cover loss was highest at low elevations with low tree cover, but absolute tree cover loss was greater in areas of high tree cover, which increased with elevation. The loss of more than half of the canopy cover during a 2-year drought period was much greater than losses due to fire or possible increases due to historic land use (for example, grazing). These results suggest that regional-scale climatic influences may be more important than land use legacies in controlling tree cover of these and perhaps other semiarid woodlands over longer time scales—notable given that similar episodes of tree mortality are projected in coming decades with climate change.
    Keywords aerial photography ; canopy ; climate change ; drought ; grazing ; land use ; pinyon-juniper ; tree mortality ; trees ; woodlands ; Southwestern United States
    Language English
    Dates of publication 2011-09
    Size p. 949-962.
    Publishing place Springer-Verlag
    Document type Article
    ZDB-ID 1428921-0
    ISSN 1435-0629 ; 1432-9840
    ISSN (online) 1435-0629
    ISSN 1432-9840
    DOI 10.1007/s10021-011-9458-2
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Into the woods: Changes in mosquito community composition and presence of key vectors at increasing distances from the urban edge in urban forest parks in Manaus, Brazil

    Hendy, Adam / Hernandez-Acosta, Eduardo / Chaves, Bárbara Aparecida / Fé, Nelson Ferreira / Valério, Danielle / Mendonça, Claudia / Lacerda, Marcus Vinícius Guimarães de / Buenemann, Michaela / Vasilakis, Nikos / Hanley, Kathryn A

    Acta tropica. 2020 June, v. 206

    2020  

    Abstract: Mosquito-borne Zika virus (ZIKV) was recently introduced into the Americas and now has the potential to spill back into a sylvatic cycle in the region, likely involving non-human primates and Aedes, Haemagogus, and Sabethes species mosquitoes. We ... ...

    Abstract Mosquito-borne Zika virus (ZIKV) was recently introduced into the Americas and now has the potential to spill back into a sylvatic cycle in the region, likely involving non-human primates and Aedes, Haemagogus, and Sabethes species mosquitoes. We investigated potential routes of mosquito-borne virus exchange between urban and sylvatic transmission cycles by characterizing mosquito communities in three urban forest parks that receive heavy traffic from both humans and monkeys in Manaus, Brazil.Parks were stratified by both distance from the urban-forest edge (0, 50, 100, and 500 m) and relative Normalized Difference Vegetation Index (NDVI) (low, medium, or high), and mosquitoes were sampled at randomly selected sites within each stratum using BG-Sentinel traps. Additionally, temperature, relative humidity, and other environmental data were collected at each site.A total of 1,172 mosquitoes were collected from 184 sites sampled in 2018, of which 98 sites were resampled in 2019. Using park as the unit of replication (i.e. 3 replicates per sampling stratum), a two-way ANOVA showed no effect of distance or NDVI on the mean number of identified species (P > 0.05 for both comparisons) or on species diversity as measured by the Shannon-Wiener diversity index (P > 0.10 for both comparisons). However, the Morisita overlap index revealed that mosquito communities changed substantially with increasing distance from edge, with communities at 0 m and 500 m being quite distinct. Aedes albopictus and Ae. aegypti penetrated at least 100 m into the forest, while forest specialists including Haemagogus janthinomys, Sabethes glaucodaemon, and Sa. tridentatus were detected in low numbers within 100 m from the forest edge. Trichoprosopon digitatum and Psorophora amazonica were among the most abundant species collected, and both showed distributions extending from the forest edge to its interior.Our results show overlapping distributions of urban and forest mosquitoes at park edges, which highlights the risk of arbovirus exchange via multiple bridge vectors in Brazilian urban forest parks. These parks may also provide refugia for both Ae. albopictus and Ae. aegypti from mosquito control programs.
    Keywords Aedes aegypti ; Aedes albopictus ; Haemagogus ; Primates ; Psorophora ; Sabethes ; Trichoprosopon digitatum ; Zika virus ; analysis of variance ; arboviruses ; community structure ; edge effects ; humans ; monkeys ; mosquito control ; normalized difference vegetation index ; parks ; refuge habitats ; relative humidity ; species diversity ; temperature ; traffic ; traps ; urban forests ; Brazil ; North America
    Language English
    Dates of publication 2020-06
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 210415-5
    ISSN 1873-6254 ; 0001-706X
    ISSN (online) 1873-6254
    ISSN 0001-706X
    DOI 10.1016/j.actatropica.2020.105441
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Ecological niche modeling of Aedes mosquito vectors of chikungunya virus in southeastern Senegal

    Richman, Rebecca / Buenemann, Michaela / Dia, Ibrahima / Diagne, Cheikh T / Diallo, Diawo / Diallo, Mawlouth / Faye, Oumar / Hanley, Kathryn A / Sall, Amadou A / Weaver, Scott C

    Parasites & vectors. 2018 Dec., v. 11, no. 1

    2018  

    Abstract: BACKGROUND: Chikungunya virus (CHIKV) originated in a sylvatic cycle of transmission between non-human animal hosts and vector mosquitoes in the forests of Africa. Subsequently the virus jumped out of this ancestral cycle into a human-endemic ... ...

    Abstract BACKGROUND: Chikungunya virus (CHIKV) originated in a sylvatic cycle of transmission between non-human animal hosts and vector mosquitoes in the forests of Africa. Subsequently the virus jumped out of this ancestral cycle into a human-endemic transmission cycle vectored by anthropophilic mosquitoes. Sylvatic CHIKV cycles persist in Africa and continue to spill over into humans, creating the potential for new CHIKV strains to enter human-endemic transmission. To mitigate such spillover, it is first necessary to delineate the distributions of the sylvatic mosquito vectors of CHIKV, to identify the environmental factors that shape these distributions, and to determine the association of mosquito presence with key drivers of virus spillover, including mosquito and CHIKV abundance. We therefore modeled the distribution of seven CHIKV mosquito vectors over two sequential rainy seasons in Kédougou, Senegal using Maxent. METHODS: Mosquito data were collected in fifty sites distributed in five land cover classes across the study area. Environmental data representing land cover, topographic, and climatic factors were included in the models. Models were compared and evaluated using area under the receiver operating characteristic curve (AUROC) statistics. The correlation of model outputs with abundance of individual mosquito species as well as CHIKV-positive mosquito pools was tested. RESULTS: Fourteen models were produced and evaluated; the environmental variables most strongly associated with mosquito distributions were distance to large patches of forest, landscape patch size, rainfall, and the normalized difference vegetation index (NDVI). Seven models were positively correlated with mosquito abundance and one (Aedes taylori) was consistently, positively correlated with CHIKV-positive mosquito pools. Eight models predicted high relative occurrence rates of mosquitoes near the villages of Tenkoto and Ngary, the areas with the highest frequency of CHIKV-positive mosquito pools. CONCLUSIONS: Of the environmental factors considered here, landscape fragmentation and configuration had the strongest influence on mosquito distributions. Of the mosquito species modeled, the distribution of Ae. taylori correlated most strongly with abundance of CHIKV, suggesting that presence of this species will be a useful predictor of sylvatic CHIKV presence.
    Keywords Aedes ; Chikungunya virus ; climatic factors ; correlation ; forests ; graphs ; habitat fragmentation ; hosts ; humans ; insect vectors ; land cover ; landscapes ; models ; niches ; normalized difference vegetation index ; rain ; topography ; villages ; viruses ; wet season ; Senegal
    Language English
    Dates of publication 2018-12
    Size p. 255.
    Publishing place BioMed Central
    Document type Article
    ZDB-ID 2409480-8
    ISSN 1756-3305
    ISSN 1756-3305
    DOI 10.1186/s13071-018-2832-6
    Database NAL-Catalogue (AGRICOLA)

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