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  1. Article ; Online: Extracellular Vesicles Isolated from Malignant Mesothelioma Cancer-Associated Fibroblasts Induce Pro-Oncogenic Changes in Healthy Mesothelial Cells.

    Chernova, Tatyana / Grosso, Stefano / Sun, Xiao-Ming / Tenor, Angela Rubio / Cabeza, Joaquin Zacarias / Craxton, Andrew / Self, Emily L / Nakas, Apostolos / Cain, Kelvin / MacFarlane, Marion / Willis, Anne E

    International journal of molecular sciences

    2022  Volume 23, Issue 20

    Abstract: Malignant mesothelioma is an aggressive tumour of the pleura (MPM) or peritoneum with a clinical presentation at an advanced stage of the disease. Current therapies only marginally improve survival and there is an urgent need to identify new treatments. ... ...

    Abstract Malignant mesothelioma is an aggressive tumour of the pleura (MPM) or peritoneum with a clinical presentation at an advanced stage of the disease. Current therapies only marginally improve survival and there is an urgent need to identify new treatments. Carcinoma-associated fibroblasts (CAFs) represent the main component of a vast stroma within MPM and play an important role in the tumour microenvironment. The influence of CAFs on cancer progression, aggressiveness and metastasis is well understood; however, the role of CAF-derived extracellular vesicles (CAF-EVs) in the promotion of tumour development and invasiveness is underexplored. We purified CAF-EVs from MPM-associated cells and healthy dermal human fibroblasts and examined their effect on cell proliferation and motility. The data show that exposure of healthy mesothelial cells to EVs derived from CAFs, but not from normal dermal human fibroblasts (NDHF) resulted in activating pro-oncogenic signalling pathways and increased proliferation and motility. Consistent with its role in suppressing Yes-Associated Protein (YAP) activation (which in MPM is a result of Hippo pathway inactivation), treatment with Simvastatin ameliorated the pro-oncogenic effects instigated by CAF-EVs by mechanisms involving both a reduction in EV number and changes in EV cargo. Collectively, these data determine the significance of CAF-derived EVs in mesothelioma development and progression and suggest new targets in cancer therapy.
    MeSH term(s) Humans ; Mesothelioma, Malignant ; Cancer-Associated Fibroblasts/metabolism ; YAP-Signaling Proteins ; Cell Line, Tumor ; Mesothelioma/pathology ; Extracellular Vesicles/metabolism ; Carcinogenesis/metabolism ; Simvastatin ; Tumor Microenvironment
    Chemical Substances YAP-Signaling Proteins ; Simvastatin (AGG2FN16EV)
    Language English
    Publishing date 2022-10-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms232012469
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Differential Responses of Immune Cells to Type I Interferon Contribute to Host Resistance to Viral Infection

    Baranek, Thomas / Vu Manh, Thien-Phong / Alexandre, Yannick / Maqbool, Muhammad Ahmad / Cabeza, Joaquin Zacarias / Tomasello, Elena / Crozat, Karine / Bessou, Gilles / Zucchini, Nicolas / Robbins, Scott H / Vivier, Eric / Kalinke, Ulrich / Ferrier, Pierre / Dalod, Marc

    Cell host & microbe. 2012 Oct. 18, v. 12, no. 4

    2012  

    Abstract: Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells ( ... ...

    Abstract Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells (DCs) and natural killer (NK) cells. IFNs induce cell-intrinsic responses in DCs, activating antiproliferative, antiviral, and lymphocyte-activating gene networks, consistent with high activity of the transcription factor STAT1 in these cells. By comparison, NK cells exhibit lower STAT1 expression and reduced IFN responsiveness. Rather, IFNs indirectly affect NK cells by inducing IL-15, which activates the transcription factor E2F and stimulates genes promoting cell expansion. IFN cell-intrinsic responses are necessary in DCs, but not NK cells, for MCMV resistance. Thus, sensitivity to IFN-induced cytokines and differences in IFN receptor signaling program immune cells to mount distinct responses that promote viral control.
    Keywords Cytomegalovirus ; dendritic cells ; genes ; immune response ; interferons ; interleukin-15 ; mice ; natural killer cells ; transcription factors
    Language English
    Dates of publication 2012-1018
    Size p. 571-584.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 2278004-X
    ISSN 1931-3128
    ISSN 1931-3128
    DOI 10.1016/j.chom.2012.09.002
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters.

    Fenouil, Romain / Cauchy, Pierre / Koch, Frederic / Descostes, Nicolas / Cabeza, Joaquin Zacarias / Innocenti, Charlène / Ferrier, Pierre / Spicuglia, Salvatore / Gut, Marta / Gut, Ivo / Andrau, Jean-Christophe

    Genome research

    2012  Volume 22, Issue 12, Page(s) 2399–2408

    Abstract: One clear hallmark of mammalian promoters is the presence of CpG islands (CGIs) at more than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters. Using genome-wide approaches, we show that GC content and CGIs are major ... ...

    Abstract One clear hallmark of mammalian promoters is the presence of CpG islands (CGIs) at more than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters. Using genome-wide approaches, we show that GC content and CGIs are major promoter elements in mammalian cells, able to govern open chromatin conformation and support paused transcription. First, we define three classes of promoters with distinct transcriptional directionality and pausing properties that correlate with their GC content. We further analyze the direct influence of GC content on nucleosome positioning and depletion and show that CpG content and CGI width correlate with nucleosome depletion both in vivo and in vitro. We also show that transcription is not essential for nucleosome exclusion but influences both a weak +1 and a well-positioned nucleosome at CGI borders. Altogether our data support the idea that CGIs have become an essential feature of promoter structure defining novel regulatory properties in mammals.
    MeSH term(s) Animals ; Base Composition/genetics ; Cells, Cultured ; Chromatin Assembly and Disassembly ; CpG Islands/genetics ; Gene Deletion ; Genetic Association Studies/methods ; Mammals/genetics ; Mice ; Nucleosomes/genetics ; Nucleosomes/metabolism ; TATA Box/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Transcription Initiation Site
    Chemical Substances Nucleosomes ; Transcription Factors
    Language English
    Publishing date 2012-10-25
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1284872-4
    ISSN 1549-5469 ; 1088-9051 ; 1054-9803
    ISSN (online) 1549-5469
    ISSN 1088-9051 ; 1054-9803
    DOI 10.1101/gr.138776.112
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Differential responses of immune cells to type I interferon contribute to host resistance to viral infection.

    Baranek, Thomas / Manh, Thien-Phong Vu / Alexandre, Yannick / Maqbool, Muhammad Ahmad / Cabeza, Joaquin Zacarias / Tomasello, Elena / Crozat, Karine / Bessou, Gilles / Zucchini, Nicolas / Robbins, Scott H / Vivier, Eric / Kalinke, Ulrich / Ferrier, Pierre / Dalod, Marc

    Cell host & microbe

    2012  Volume 12, Issue 4, Page(s) 571–584

    Abstract: Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells ( ... ...

    Abstract Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells (DCs) and natural killer (NK) cells. IFNs induce cell-intrinsic responses in DCs, activating antiproliferative, antiviral, and lymphocyte-activating gene networks, consistent with high activity of the transcription factor STAT1 in these cells. By comparison, NK cells exhibit lower STAT1 expression and reduced IFN responsiveness. Rather, IFNs indirectly affect NK cells by inducing IL-15, which activates the transcription factor E2F and stimulates genes promoting cell expansion. IFN cell-intrinsic responses are necessary in DCs, but not NK cells, for MCMV resistance. Thus, sensitivity to IFN-induced cytokines and differences in IFN receptor signaling program immune cells to mount distinct responses that promote viral control.
    MeSH term(s) Animals ; Cells, Cultured ; Dendritic Cells/immunology ; Flow Cytometry ; Gene Expression Profiling ; Herpesviridae Infections/immunology ; Herpesviridae Infections/veterinary ; Interferon Type I/immunology ; Killer Cells, Natural/immunology ; Mice ; Mice, Inbred C57BL ; Models, Biological ; Muromegalovirus/immunology ; Signal Transduction
    Chemical Substances Interferon Type I
    Language English
    Publishing date 2012-10-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2278004-X
    ISSN 1934-6069 ; 1931-3128
    ISSN (online) 1934-6069
    ISSN 1931-3128
    DOI 10.1016/j.chom.2012.09.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Differential responses of immune cells to type I interferon contribute to host resistance to viral infection.

    Baranek, Thomas / Manh, Thien-Phong Vu / Alexandre, Yannick / Maqbool, Muhammad Ahmad / Cabeza, Joaquin Zacarias / Tomasello, Elena / Crozat, Karine / Bessou, Gilles / Zucchini, Nicolas / Robbins, Scott H / Vivier, Eric / Kalinke, Ulrich / Ferrier, Pierre / Dalod, Marc

    2012  

    Abstract: Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells ( ... ...

    Abstract Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells (DCs) and natural killer (NK) cells. IFNs induce cell-intrinsic responses in DCs, activating antiproliferative, antiviral, and lymphocyte-activating gene networks, consistent with high activity of the transcription factor STAT1 in these cells. By comparison, NK cells exhibit lower STAT1 expression and reduced IFN responsiveness. Rather, IFNs indirectly affect NK cells by inducing IL-15, which activates the transcription factor E2F and stimulates genes promoting cell expansion. IFN cell-intrinsic responses are necessary in DCs, but not NK cells, for MCMV resistance. Thus, sensitivity to IFN-induced cytokines and differences in IFN receptor signaling program immune cells to mount distinct responses that promote viral control.
    Language English
    Publishing date 2012-10-18
    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Differential responses of immune cells to type I interferon contribute to host resistance to viral infection.

    Baranek, Thomas / Manh, Thien-Phong Vu / Alexandre, Yannick / Maqbool, Muhammad Ahmad / Cabeza, Joaquin Zacarias / Tomasello, Elena / Crozat, Karine / Bessou, Gilles / Zucchini, Nicolas / Robbins, Scott H / Vivier, Eric / Kalinke, Ulrich / Ferrier, Pierre / Dalod, Marc

    2012  

    Abstract: Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells ( ... ...

    Abstract Type I interferons (IFNs) are central to antiviral defense, but how they orchestrate immune cell function is incompletely understood. We determined that IFNs produced during murine cytomegalovirus (MCMV) infection differentially affect dendritic cells (DCs) and natural killer (NK) cells. IFNs induce cell-intrinsic responses in DCs, activating antiproliferative, antiviral, and lymphocyte-activating gene networks, consistent with high activity of the transcription factor STAT1 in these cells. By comparison, NK cells exhibit lower STAT1 expression and reduced IFN responsiveness. Rather, IFNs indirectly affect NK cells by inducing IL-15, which activates the transcription factor E2F and stimulates genes promoting cell expansion. IFN cell-intrinsic responses are necessary in DCs, but not NK cells, for MCMV resistance. Thus, sensitivity to IFN-induced cytokines and differences in IFN receptor signaling program immune cells to mount distinct responses that promote viral control.
    Language English
    Publishing date 2012-10-18
    Publishing country de
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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