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  1. Article ; Online: Stopping a reaction-diffusion front.

    Caputo, Jean-Guy / Cruz-Pacheco, Gustavo / Sarels, Benoît

    Physical review. E

    2021  Volume 103, Issue 3-1, Page(s) 32210

    Abstract: We revisit the problem of pinning a reaction-diffusion front by a defect, in particular by a reaction-free region. Using collective variables for the front and numerical simulations, we compare the behaviors of a bistable and monostable front. A bistable ...

    Abstract We revisit the problem of pinning a reaction-diffusion front by a defect, in particular by a reaction-free region. Using collective variables for the front and numerical simulations, we compare the behaviors of a bistable and monostable front. A bistable front can be pinned as confirmed by a pinning criterion, the analysis of the time independent problem, and simulations. Conversely, a monostable front can never be pinned, it gives rise to a secondary pulse past the defect and we calculate the time this pulse takes to appear. These radically different behaviors of bistable and monostable fronts raise issues for modelers in particular areas of biology, as for example, the study of tumor growth in the presence of different tissues.
    Language English
    Publishing date 2021-04-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2844562-4
    ISSN 2470-0053 ; 2470-0045
    ISSN (online) 2470-0053
    ISSN 2470-0045
    DOI 10.1103/PhysRevE.103.032210
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Analysis of trophic networks: an optimisation approach.

    Caputo, Jean-Guy / Girardin, Valérie / Knippel, Arnaud / Nguyen, Minh Hieu / Niquil, Nathalie / Noguès, Quentin

    Journal of mathematical biology

    2021  Volume 83, Issue 5, Page(s) 53

    Abstract: We introduce a methodology to study the possible matter flows of an ecosystem defined by observational biomass data and realistic biological constraints. The flows belong to a polyhedron in a multi dimensional space that may make statistical exploration ... ...

    Abstract We introduce a methodology to study the possible matter flows of an ecosystem defined by observational biomass data and realistic biological constraints. The flows belong to a polyhedron in a multi dimensional space that may make statistical exploration difficult in practice; instead, we propose to solve a convex optimization problem. Seven criteria based on ecological network indices have been selected to be used as convex goal functions. Numerical results show that the method is fast and can be used for large systems. Minimum flow solutions are analyzed using flow decomposition in paths and circuits. Their consistency is also tested by introducing a system of differential equations for the biomasses and examining the stability of the biomass fixed point. The method is illustrated and explained throughout the text on an ecosystem toy model. It is also applied to realistic food models.
    MeSH term(s) Biomass ; Ecosystem
    Language English
    Publishing date 2021-10-28
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 187101-8
    ISSN 1432-1416 ; 0303-6812
    ISSN (online) 1432-1416
    ISSN 0303-6812
    DOI 10.1007/s00285-021-01682-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Nonlinear waves in networks: model reduction for the sine-Gordon equation.

    Caputo, Jean-Guy / Dutykh, Denys

    Physical review. E, Statistical, nonlinear, and soft matter physics

    2014  Volume 90, Issue 2, Page(s) 22912

    Abstract: To study how nonlinear waves propagate across Y- and T-type junctions, we consider the two-dimensional (2D) sine-Gordon equation as a model and examine the crossing of kinks and breathers. Comparing energies for different geometries reveals that, for ... ...

    Abstract To study how nonlinear waves propagate across Y- and T-type junctions, we consider the two-dimensional (2D) sine-Gordon equation as a model and examine the crossing of kinks and breathers. Comparing energies for different geometries reveals that, for small widths, the angle of the fork plays no role. Motivated by this, we introduce a one-dimensional effective model whose solutions agree well with the 2D simulations for kink and breather solutions. These exhibit two different behaviors: a kink crosses if it has sufficient energy; conversely a breather crosses when v>1-ω, where v and ω are, respectively, its velocity and frequency. This methodology can be generalized to more complex nonlinear wave models.
    MeSH term(s) Models, Theoretical ; Motion ; Nonlinear Dynamics
    Language English
    Publishing date 2014-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1550-2376
    ISSN (online) 1550-2376
    DOI 10.1103/PhysRevE.90.022912
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Reaction-diffusion front crossing a local defect.

    Caputo, Jean-Guy / Sarels, Benoit

    Physical review. E, Statistical, nonlinear, and soft matter physics

    2011  Volume 84, Issue 4 Pt 1, Page(s) 41108

    Abstract: The interaction of a Zeldovich-Frank-Kamenetsky reaction-diffusion front with a localized defect is studied numerically and analytically. For the analysis, we start from conservation laws and develop simple, collective variable, ordinary differential ... ...

    Abstract The interaction of a Zeldovich-Frank-Kamenetsky reaction-diffusion front with a localized defect is studied numerically and analytically. For the analysis, we start from conservation laws and develop simple, collective variable, ordinary differential equations for the front position and width. Their solutions are in good agreement with the solutions of the full problem. Finally, using this reduced model, we explain the pinning of the front on a large defect and obtain a quantitative criterion.
    Language English
    Publishing date 2011-10
    Publishing country United States
    Document type Journal Article
    ISSN 1550-2376
    ISSN (online) 1550-2376
    DOI 10.1103/PhysRevE.84.041108
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Article ; Online: Epidemic model on a network

    Bustamante-Castañeda, F / Caputo, Jean-Guy, / Cruz-Pacheco, G / Knippel, A / Mouatamide, F

    https://hal.archives-ouvertes.fr/hal-02558195 ; 2020

    analysis and applications to COVID-19

    2020  

    Abstract: We analyze an epidemic model on a network consisting of susceptible-infected-recovered equations at the nodes coupled by diffusion using a graph Laplacian. We introduce an epidemic criterion and examine different vaccination/containment strategies: we ... ...

    Abstract We analyze an epidemic model on a network consisting of susceptible-infected-recovered equations at the nodes coupled by diffusion using a graph Laplacian. We introduce an epidemic criterion and examine different vaccination/containment strategies: we prove that it is most effective to vaccinate a node of highest degree. The model is also useful to evaluate deconfinement scenarios and prevent a so-called second wave. The model has few parameters enabling fitting to the data and the essential ingredient of importation of infected; these features are particularly important for the current COVID-19 epidemic.
    Keywords [NLIN.NLIN-PS]Nonlinear Sciences [physics]/Pattern Formation and Solitons [nlin.PS] ; [SDE.BE]Environmental Sciences/Biodiversity and Ecology ; covid19
    Language English
    Publishing date 2020-04-29
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Book ; Article ; Online: Epidemic model on a network

    Bustamante-Castañeda, F / Caputo, Jean-Guy, / Cruz-Pacheco, G / Knippel, A / Mouatamide, F

    https://hal.archives-ouvertes.fr/hal-02558195 ; 2020

    analysis and applications to COVID-19

    2020  

    Abstract: We analyze an epidemic model on a network consisting of susceptible-infected-recovered equations at the nodes coupled by diffusion using a graph Laplacian. We introduce an epidemic criterion and examine different vaccination/containment strategies: we ... ...

    Abstract We analyze an epidemic model on a network consisting of susceptible-infected-recovered equations at the nodes coupled by diffusion using a graph Laplacian. We introduce an epidemic criterion and examine different vaccination/containment strategies: we prove that it is most effective to vaccinate a node of highest degree. The model is also useful to evaluate deconfinement scenarios and prevent a so-called second wave. The model has few parameters enabling fitting to the data and the essential ingredient of importation of infected; these features are particularly important for the current COVID-19 epidemic.
    Keywords [NLIN.NLIN-PS]Nonlinear Sciences [physics]/Pattern Formation and Solitons [nlin.PS] ; [SDE.BE]Environmental Sciences/Biodiversity and Ecology ; covid19
    Language English
    Publishing date 2020-04-29
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Book ; Article ; Online: Dispersion of a new coronavirus SARS-CoV-2 by airlines in 2020

    Cruz-Pacheco, Gustavo / Bustamante-Castañeda, J.F. / Caputo, Jean-Guy / Jiménez-Corona, M.E. / Ponce-de-León, S.

    https://hal.archives-ouvertes.fr/hal-02507142 ; 2020

    Temporal estimates of the outbreak in Mexico

    2020  

    Abstract: On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick ... ...

    Abstract On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick complemented with diffusion on a graph. The main purpose is to give estimates of the arrival virus and times of the outbreak to other locations. We use Mexico City as an example. In this case, our estimate of the arrival time is around March 20, 2020. This analysis is limited to the analysis of dispersion by airlines, so this estimate should be takenAs an overestimate since the infection can arrive by other means. Last, we show that these estimates are robust to small variations of epidemiological parameters.
    Keywords outbreak ; COVID-19 ; coronavirus ; SARS-CoV-2 ; [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ; [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS] ; covid19
    Language English
    Publishing date 2020-03-12
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Book ; Article ; Online: Dispersion of a new coronavirus SARS-CoV-2 by airlines in 2020

    Cruz-Pacheco, Gustavo / Bustamante-Castañeda, J.F. / Caputo, Jean-Guy / Jiménez-Corona, M.E. / Ponce-de-León, S.

    https://hal.archives-ouvertes.fr/hal-02507142 ; 2020

    Temporal estimates of the outbreak in Mexico

    2020  

    Abstract: On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick ... ...

    Abstract On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick complemented with diffusion on a graph. The main purpose is to give estimates of the arrival virus and times of the outbreak to other locations. We use Mexico City as an example. In this case, our estimate of the arrival time is around March 20, 2020. This analysis is limited to the analysis of dispersion by airlines, so this estimate should be takenAs an overestimate since the infection can arrive by other means. Last, we show that these estimates are robust to small variations of epidemiological parameters.
    Keywords outbreak ; COVID-19 ; coronavirus ; SARS-CoV-2 ; [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ; [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS] ; covid19
    Language English
    Publishing date 2020-03-12
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Book ; Article ; Online: Dispersion of a new coronavirus SARS-CoV-2 by airlines in 2020

    Cruz-Pacheco, Gustavo / Bustamante-Castañeda, J.F. / Caputo, Jean-Guy / Jiménez-Corona, M.E. / Ponce-de-León, S.

    https://hal.archives-ouvertes.fr/hal-02507142 ; 2020

    Temporal estimates of the outbreak in Mexico

    2020  

    Abstract: On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick ... ...

    Abstract On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick complemented with diffusion on a graph. The main purpose is to give estimates of the arrival virus and times of the outbreak to other locations. We use Mexico City as an example. In this case, our estimate of the arrival time is around March 20, 2020. This analysis is limited to the analysis of dispersion by airlines, so this estimate should be takenAs an overestimate since the infection can arrive by other means. Last, we show that these estimates are robust to small variations of epidemiological parameters.
    Keywords outbreak ; COVID-19 ; coronavirus ; SARS-CoV-2 ; [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ; [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS] ; covid19
    Language English
    Publishing date 2020-03-12
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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    Kategorien

  10. Book ; Article ; Online: Dispersion of a new coronavirus SARS-CoV-2 by airlines in 2020

    Cruz-Pacheco, Gustavo / Bustamante-Castañeda, J.F. / Caputo, Jean-Guy / Jiménez-Corona, M.E. / Ponce-de-León, S.

    https://hal.archives-ouvertes.fr/hal-02507142 ; 2020

    Temporal estimates of the outbreak in Mexico

    2020  

    Abstract: On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick ... ...

    Abstract On January 23, 2020, China imposed a quarantine on the city of Wuhan to contain the Covid-19 outbreak. In this work we show an analysis of the dispersion of this infection to other cities by airlines based on the classic model the Kermack and McKendrick complemented with diffusion on a graph. The main purpose is to give estimates of the arrival virus and times of the outbreak to other locations. We use Mexico City as an example. In this case, our estimate of the arrival time is around March 20, 2020. This analysis is limited to the analysis of dispersion by airlines, so this estimate should be takenAs an overestimate since the infection can arrive by other means. Last, we show that these estimates are robust to small variations of epidemiological parameters.
    Keywords outbreak ; COVID-19 ; coronavirus ; SARS-CoV-2 ; [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ; [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS] ; covid19
    Language English
    Publishing date 2020-03-12
    Publisher HAL CCSD
    Publishing country fr
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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