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  1. Article ; Online: Genome Sequence of Xanthomonas campestris Strain FDWSRU 18048, an Emerging Pathogen of Nonnative, Invasive Garlic Mustard (

    Tancos, Matthew A / Dubrow, Zoë E / Carpenter, Sara C D / Bogdanove, Adam J

    Microbiology resource announcements

    2022  Volume 11, Issue 2, Page(s) e0094221

    Abstract: Xanthomonas campestris infections of nonnative, invasive garlic mustard populations have been recently reported in the eastern United States. Here, we report the genome sequence of the pathogenic X. campestris strain FDWSRU 18048. The genome is 4,978,509  ...

    Abstract Xanthomonas campestris infections of nonnative, invasive garlic mustard populations have been recently reported in the eastern United States. Here, we report the genome sequence of the pathogenic X. campestris strain FDWSRU 18048. The genome is 4,978,509 bp and closely related to the genome of X. campestris pv. incanae strain CFBP2527.
    Language English
    Publishing date 2022-02-17
    Publishing country United States
    Document type Journal Article
    ISSN 2576-098X
    ISSN (online) 2576-098X
    DOI 10.1128/mra.00942-21
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Complete Genome Sequences of Xanthomonas axonopodis pv. glycines Isolates from the United States and Thailand Reveal Conserved Transcription Activator-Like Effectors.

    Carpenter, Sara C D / Kladsuwan, Lawan / Han, Sang-Wook / Prathuangwong, Sutruedee / Bogdanove, Adam J

    Genome biology and evolution

    2019  Volume 11, Issue 5, Page(s) 1380–1384

    Abstract: To compare overall genome structure and transcription activator-like effector content, we completely sequenced Xanthomonas axonopodis pv. glycines strain 12-2, isolated in 1992 in Thailand, and strain EB08, isolated in 2008 in the United States (Iowa) ... ...

    Abstract To compare overall genome structure and transcription activator-like effector content, we completely sequenced Xanthomonas axonopodis pv. glycines strain 12-2, isolated in 1992 in Thailand, and strain EB08, isolated in 2008 in the United States (Iowa) using PacBio technology. We reassembled the genome sequence for a second US strain, 8ra, derived from a 1980 Iowa isolate, from existing PacBio reads. Despite geographic and temporal separation, the three genomes are highly syntenous, and their transcription activator-like effector repertoires are highly conserved.
    MeSH term(s) Base Sequence ; Conserved Sequence ; Thailand ; Transcription Activator-Like Effectors/genetics ; United States ; Whole Genome Sequencing ; Xanthomonas axonopodis/genetics
    Chemical Substances Transcription Activator-Like Effectors
    Language English
    Publishing date 2019-04-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 1759-6653
    ISSN (online) 1759-6653
    DOI 10.1093/gbe/evz085
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Cruciferous Weed Isolates of Xanthomonas campestris Yield Insight into Pathovar Genomic Relationships and Genetic Determinants of Host and Tissue Specificity

    Dubrow, Zoë E. / Carpenter, Sara C. D. / Carter, Morgan E. / Grinage, Ayress / Gris, Carine / Lauber, Emmanuelle / Butchachas, Jules / Jacobs, Jonathan M. / Smart, Christine D. / Tancos, Matthew A. / Noël, Laurent D. / Bogdanove, Adam J.

    Molecular plant-microbe interactions. 2022 Sept., v. 35, no. 9

    2022  

    Abstract: Pathovars of Xanthomonas campestris cause distinct diseases on different brassicaceous hosts. The genomic relationships among pathovars as well as the genetic determinants of host range and tissue specificity remain poorly understood despite decades of ... ...

    Abstract Pathovars of Xanthomonas campestris cause distinct diseases on different brassicaceous hosts. The genomic relationships among pathovars as well as the genetic determinants of host range and tissue specificity remain poorly understood despite decades of research. Here, leveraging advances in multiplexed long-read technology, we fully sequenced the genomes of a collection of X. campestris strains isolated from cruciferous crops and weeds in New York and California as well as strains from global collections, to investigate pathovar relationships and candidate genes for host- and tissue-specificity. Pathogenicity assays and genomic comparisons across this collection and publicly available X. campestris genomes revealed a correlation between pathovar and genomic relatedness and provide support for X. campestris pv. barbareae, the validity of which had been questioned. Linking strain host range with type III effector repertoires identified AvrAC (also ‘XopAC’) as a candidate host-range determinant, preventing infection of Matthiola incana, and this was confirmed experimentally. Furthermore, the presence of a copy of the cellobiosidase gene cbsA with coding sequence for a signal peptide was found to correlate with the ability to infect vascular tissues, in agreement with a previous study of diverse Xanthomonas species; however, heterologous expression in strains lacking the gene gave mixed results, indicating that factors in addition to cbsA influence tissue specificity of X. campestris pathovars. Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
    Keywords Matthiola incana ; Xanthomonas campestris ; genes ; genomics ; heterologous gene expression ; host range ; pathogenicity ; pathovars ; signal peptide ; weeds ; California ; New York
    Language English
    Dates of publication 2022-09
    Size p. 791-802.
    Publishing place The American Phytopathological Society
    Document type Article
    ZDB-ID 743331-1
    ISSN 1943-7706 ; 0894-0282
    ISSN (online) 1943-7706
    ISSN 0894-0282
    DOI 10.1094/MPMI-01-22-0024-R
    Database NAL-Catalogue (AGRICOLA)

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    In stock of ZB MED Bonn / Germany

    Z 4734: Show issues

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  4. Article: Complete Genome Resource of

    Niu, Xiang-Na / Li, Yiming / Carpenter, Sara C D / Dan, Xue / Li, Tianjiao / Wu, Qiaozhi / Wang, Li / Jiang, Wei / Huang, Sheng / Tang, Ji-Liang / Bogdanove, Adam J / He, Yong-Qiang

    Molecular plant-microbe interactions : MPMI

    2022  Volume 35, Issue 4, Page(s) 357–359

    MeSH term(s) Bacterial Proteins/genetics ; China ; Oryza/genetics ; Plant Diseases ; Sequence Analysis, DNA ; Xanthomonas/genetics
    Chemical Substances Bacterial Proteins
    Language English
    Publishing date 2022-03-14
    Publishing country United States
    Document type Journal Article
    ZDB-ID 743331-1
    ISSN 1943-7706 ; 0894-0282
    ISSN (online) 1943-7706
    ISSN 0894-0282
    DOI 10.1094/MPMI-10-21-0259-A
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

    Zs.A 3530: Show issues Location:
    Je nach Verfügbarkeit (siehe Angabe bei Bestand)
    bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular
    Jg. 1995 - 2021: Lesesall (2.OG)
    ab Jg. 2022: Lesesaal (EG)

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  5. Article: Cruciferous Weed Isolates of

    Dubrow, Zoë E / Carpenter, Sara C D / Carter, Morgan E / Grinage, Ayress / Gris, Carine / Lauber, Emmanuelle / Butchachas, Jules / Jacobs, Jonathan M / Smart, Christine D / Tancos, Matthew A / Noël, Laurent D / Bogdanove, Adam J

    Molecular plant-microbe interactions : MPMI

    2022  Volume 35, Issue 9, Page(s) 791–802

    Abstract: Pathovars ... ...

    Abstract Pathovars of
    MeSH term(s) Genomics ; Organ Specificity ; Protein Sorting Signals ; Xanthomonas/genetics ; Xanthomonas campestris/genetics
    Chemical Substances Protein Sorting Signals
    Language English
    Publishing date 2022-09-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 743331-1
    ISSN 1943-7706 ; 0894-0282
    ISSN (online) 1943-7706
    ISSN 0894-0282
    DOI 10.1094/MPMI-01-22-0024-R
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

    Zs.A 3530: Show issues Location:
    Je nach Verfügbarkeit (siehe Angabe bei Bestand)
    bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular
    Jg. 1995 - 2021: Lesesall (2.OG)
    ab Jg. 2022: Lesesaal (EG)

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  6. Article ; Online: Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants.

    Wang, Li / Kaya, Hilal Betul / Zhang, Ning / Rai, Rhitu / Willmann, Matthew R / Carpenter, Sara C D / Read, Andrew C / Martin, Federico / Fei, Zhangjun / Leach, Jan E / Martin, Gregory B / Bogdanove, Adam J

    Frontiers in genome editing

    2021  Volume 3, Page(s) 617553

    Abstract: Prime editing is an adaptation of the CRISPR-Cas system that uses a Cas9(H840A)-reverse transcriptase fusion and a guide RNA amended with template and primer binding site sequences to achieve RNA-templated conversion of the target DNA, allowing specified ...

    Abstract Prime editing is an adaptation of the CRISPR-Cas system that uses a Cas9(H840A)-reverse transcriptase fusion and a guide RNA amended with template and primer binding site sequences to achieve RNA-templated conversion of the target DNA, allowing specified substitutions, insertions, and deletions. In the first report of prime editing in plants, a variety of edits in rice and wheat were described, including insertions up to 15 bp. Several studies in rice quickly followed, but none reported a larger insertion. Here, we report easy-to-use vectors for prime editing in dicots as well as monocots, their validation in
    Language English
    Publishing date 2021-03-04
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2673-3439
    ISSN (online) 2673-3439
    DOI 10.3389/fgeed.2021.617553
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host.

    Carter, Morgan E / Carpenter, Sara C D / Dubrow, Zoë E / Sabol, Mark R / Rinaldi, Fabio C / Lastovetsky, Olga A / Mondo, Stephen J / Pawlowska, Teresa E / Bogdanove, Adam J

    Proceedings of the National Academy of Sciences of the United States of America

    2020  Volume 117, Issue 29, Page(s) 17122–17129

    Abstract: Symbioses of bacteria with fungi have only recently been described and are poorly understood. In the symbiosis ... ...

    Abstract Symbioses of bacteria with fungi have only recently been described and are poorly understood. In the symbiosis of
    MeSH term(s) Burkholderia/genetics ; Burkholderia/metabolism ; Burkholderia/physiology ; Gene Expression Regulation, Fungal/genetics ; Rhizopus/genetics ; Rhizopus/metabolism ; Stress, Physiological/genetics ; Symbiosis/genetics ; Transcription Activator-Like Effectors/genetics ; Transcription Activator-Like Effectors/metabolism ; Transcriptome/genetics ; Type III Secretion Systems/genetics ; Type III Secretion Systems/metabolism
    Chemical Substances Transcription Activator-Like Effectors ; Type III Secretion Systems
    Language English
    Publishing date 2020-07-06
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.2003857117
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

    Zs.A 1148: Show issues Location:
    Je nach Verfügbarkeit (siehe Angabe bei Bestand)
    bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular
    Jg. 1995 - 2021: Lesesall (1.OG)
    ab Jg. 2022: Lesesaal (EG)

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  8. Article: An

    Carpenter, Sara C D / Mishra, Prashant / Ghoshal, Chandrika / Dash, Prasanta K / Wang, Li / Midha, Samriti / Laha, Gouri S / Lore, Jagjeet S / Kositratana, Wichai / Singh, Nagendra K / Singh, Kuldeep / Patil, Prabhu B / Oliva, Ricardo / Patarapuwadol, Sujin / Bogdanove, Adam J / Rai, Rhitu

    Frontiers in microbiology

    2020  Volume 11, Page(s) 579504

    Abstract: The rice bacterial blight ... ...

    Abstract The rice bacterial blight pathogen
    Language English
    Publishing date 2020-10-21
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2020.579504
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Single molecule real-time sequencing of

    Booher, Nicholas J / Carpenter, Sara C D / Sebra, Robert P / Wang, Li / Salzberg, Steven L / Leach, Jan E / Bogdanove, Adam J

    Microbial genomics

    2016  Volume 1, Issue 4

    Abstract: Pathogen-injected, direct transcriptional activators of host genes, TAL (transcription activator-like) effectors play determinative roles in plant diseases caused ... ...

    Abstract Pathogen-injected, direct transcriptional activators of host genes, TAL (transcription activator-like) effectors play determinative roles in plant diseases caused by
    Language English
    Publishing date 2016-06-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835258-0
    ISSN 2057-5858 ; 2057-5858
    ISSN (online) 2057-5858
    ISSN 2057-5858
    DOI 10.1099/mgen.0.000032
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.

    Tran, Tuan T / Pérez-Quintero, Alvaro L / Wonni, Issa / Carpenter, Sara C D / Yu, Yanhua / Wang, Li / Leach, Jan E / Verdier, Valérie / Cunnac, Sébastien / Bogdanove, Adam J / Koebnik, Ralf / Hutin, Mathilde / Szurek, Boris

    PLoS pathogens

    2018  Volume 14, Issue 6, Page(s) e1007092

    Abstract: Most Xanthomonas species translocate Transcription Activator-Like (TAL) effectors into plant cells where they function like plant transcription factors via a programmable DNA-binding domain. Characterized strains of rice pathogenic X. oryzae pv. oryzae ... ...

    Abstract Most Xanthomonas species translocate Transcription Activator-Like (TAL) effectors into plant cells where they function like plant transcription factors via a programmable DNA-binding domain. Characterized strains of rice pathogenic X. oryzae pv. oryzae harbor 9-16 different tal effector genes, but the function of only a few of them has been decoded. Using sequencing of entire genomes, we first performed comparative analyses of the complete repertoires of TAL effectors, herein referred to as TALomes, in three Xoo strains forming an African genetic lineage different from Asian Xoo. A phylogenetic analysis of the three TALomes combined with in silico predictions of TAL effector targets showed that African Xoo TALomes are highly conserved, genetically distant from Asian ones, and closely related to TAL effectors from the bacterial leaf streak pathogen Xanthomonas oryzae pv. oryzicola (Xoc). Nine clusters of TAL effectors could be identified among the three TALomes, including three showing higher levels of variation in their repeat variable diresidues (RVDs). Detailed analyses of these groups revealed recombination events as a possible source of variation among TAL effector genes. Next, to address contribution to virulence, nine TAL effector genes from the Malian Xoo strain MAI1 and four allelic variants from the Burkinabe Xoo strain BAI3, thus representing most of the TAL effector diversity in African Xoo strains, were expressed in the TAL effector-deficient X. oryzae strain X11-5A for gain-of-function assays. Inoculation of the susceptible rice variety Azucena lead to the discovery of three TAL effectors promoting virulence, including two TAL effectors previously reported to target the susceptibility (S) gene OsSWEET14 and a novel major virulence contributor, TalB. RNA profiling experiments in rice and in silico prediction of EBEs were carried out to identify candidate targets of TalB, revealing OsTFX1, a bZIP transcription factor previously identified as a bacterial blight S gene, and OsERF#123, which encodes a subgroup IXc AP2/ERF transcription factor. Use of designer TAL effectors demonstrated that induction of either gene resulted in greater susceptibility to strain X11-5A. The induction of OsERF#123 by BAI3Δ1, a talB knockout derivative of BAI3, carrying these designer TAL effectors increased virulence of BAI3Δ1, validating OsERF#123 as a new, bacterial blight S gene.
    MeSH term(s) Bacterial Proteins/genetics ; Disease Resistance/genetics ; Disease Susceptibility ; Gene Expression Regulation, Plant ; Genome, Bacterial ; Host-Pathogen Interactions ; Oryza/genetics ; Oryza/growth & development ; Oryza/microbiology ; Phylogeny ; Plant Diseases/genetics ; Plant Diseases/microbiology ; Plant Proteins/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Xanthomonas/genetics
    Chemical Substances Bacterial Proteins ; Plant Proteins ; Transcription Factors
    Language English
    Publishing date 2018-06-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2205412-1
    ISSN 1553-7374 ; 1553-7366
    ISSN (online) 1553-7374
    ISSN 1553-7366
    DOI 10.1371/journal.ppat.1007092
    Database MEDical Literature Analysis and Retrieval System OnLINE

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