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  1. Article ; Online: Polio is back? The risk of poliomyelitis recurrence globally, and the legacy of the severe acute respiratory syndrome coronavirus 2 pandemic.

    Castilletti, Concetta / Capobianchi, Maria Rosaria

    Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

    2022  Volume 29, Issue 4, Page(s) 414–416

    MeSH term(s) Humans ; SARS-CoV-2 ; Pandemics ; COVID-19/epidemiology ; Poliomyelitis/epidemiology ; Poliomyelitis/prevention & control ; Global Health ; Disease Eradication ; Immunization Programs
    Language English
    Publishing date 2022-12-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 1328418-6
    ISSN 1469-0691 ; 1470-9465 ; 1198-743X
    ISSN (online) 1469-0691
    ISSN 1470-9465 ; 1198-743X
    DOI 10.1016/j.cmi.2022.12.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: People with asymptomatic or unrecognised infection potentially contribute to monkeypox virus transmission.

    Accordini, Silvia / Cordioli, Maddalena / Pomari, Elena / Tacconelli, Evelina / Castilletti, Concetta

    The Lancet. Microbe

    2022  Volume 4, Issue 4, Page(s) e209

    MeSH term(s) Humans ; Monkeypox virus/genetics ; Mpox (monkeypox)/diagnosis ; Mpox (monkeypox)/epidemiology ; Disease Outbreaks
    Language English
    Publishing date 2022-12-20
    Publishing country England
    Document type Letter
    ISSN 2666-5247
    ISSN (online) 2666-5247
    DOI 10.1016/S2666-5247(22)00379-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Urine: A Pitfall for Molecular Detection of Toscana Virus? An Analytical Proof-of-Concept Study.

    Mori, Antonio / Matucci, Andrea / Pomari, Elena / Accordini, Silvia / Piubelli, Chiara / Donini, Annalisa / Nicolini, Lavinia / Castilletti, Concetta

    Viruses

    2024  Volume 16, Issue 1

    Abstract: Toscana virus (TOSV), a sandfly-borne virus, is an important etiological agent in human acute meningitis and meningoencephalitis in the Mediterranean area during the summer. However, the actual number of TOSV infections is underestimated. Laboratory ... ...

    Abstract Toscana virus (TOSV), a sandfly-borne virus, is an important etiological agent in human acute meningitis and meningoencephalitis in the Mediterranean area during the summer. However, the actual number of TOSV infections is underestimated. Laboratory confirmation is necessary because TOSV infection has overlapping clinical features with other neuro-invasive viral infections. Nowadays, the reference test for direct diagnosis in the acute phase of TOSV infection is the PCR based method for detecting TOSV in cerebrospinal fluid and/or plasma, serum, or blood. Although poorly employed, urine is another helpful biological matrix for TOSV detection. Urine is a matrix rich in PCR inhibitors that affect PCR efficiency; consequently, false negatives could be generated. To investigate the potential effect of urine PCR inhibitors on TOSV detection, we compared undiluted and diluted urine using 10-fold series of spiked TOSV. The results showed a significant improvement in TOSV detection performance in diluted urine (1 TCID
    MeSH term(s) Humans ; Sandfly fever Naples virus/genetics ; Body Fluids ; Plasma ; Encephalitis, California ; Laboratories
    Language English
    Publishing date 2024-01-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v16010098
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Evaluation of a ddPCR Commercial Assay for the Absolute Quantification of the Monkeypox Virus West Africa in Clinical Samples.

    Pomari, Elena / Mori, Antonio / Accordini, Silvia / Donini, Annalisa / Cordioli, Maddalena / Tacconelli, Evelina / Castilletti, Concetta

    Diagnostics (Basel, Switzerland)

    2023  Volume 13, Issue 7

    Abstract: Background: Monkeypox virus (MPXV) is a double-stranded DNA virus belonging to the orthopoxvirus genus in the family : Methods: The ddPCR reaction was assessed as a duplex assay using : Results: Regarding the clinical samples, compared to routine ... ...

    Abstract Background: Monkeypox virus (MPXV) is a double-stranded DNA virus belonging to the orthopoxvirus genus in the family
    Methods: The ddPCR reaction was assessed as a duplex assay using
    Results: Regarding the clinical samples, compared to routine molecular diagnostics, the ddPCR duplex assay showed 100% of specificity for all biological matrices and 100% sensitivity (10/10) for lesions, 100% (10/10) for rectal swabs, 90% (9/10) for pharyngeal swabs, and 60% (6/10) for whole blood.
    Conclusion: Overall, our data showed that the commercial ddPCR assay allowed the DNA detection of MPXV in 87.5% (35/40) of our cohort, highlighting useful technical indications for the different specimens with a potential greatest performance for skin lesions and rectal swabs.
    Language English
    Publishing date 2023-04-04
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662336-5
    ISSN 2075-4418
    ISSN 2075-4418
    DOI 10.3390/diagnostics13071349
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Live and Replication-Competent SARS-CoV-2 in Ocular Fluids.

    Colavita, Francesca / Curiale, Salvatore / Lapa, Daniele / Castilletti, Concetta

    JAMA ophthalmology

    2021  Volume 139, Issue 9, Page(s) 1041

    MeSH term(s) COVID-19 ; Eye ; Humans ; SARS-CoV-2
    Language English
    Publishing date 2021-06-27
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2701705-9
    ISSN 2168-6173 ; 2168-6165
    ISSN (online) 2168-6173
    ISSN 2168-6165
    DOI 10.1001/jamaophthalmol.2021.2681
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Monkeypox 2022 outbreak in non-endemic countries: Open questions relevant for public health, nonpharmacological intervention and literature review.

    Capobianchi, Maria Rosaria / Di Caro, Antonino / Piubelli, Chiara / Mori, Antonio / Bisoffi, Zeno / Castilletti, Concetta

    Frontiers in cellular and infection microbiology

    2022  Volume 12, Page(s) 1005955

    Abstract: Starting from mid-May 2022, cases of human monkeypox started to rise in several non-endemic countries. By mid-July, more than 17000 confirmed/suspect cases have been reported by at least 82 countries worldwide, with a regular incremental trend. In order ... ...

    Abstract Starting from mid-May 2022, cases of human monkeypox started to rise in several non-endemic countries. By mid-July, more than 17000 confirmed/suspect cases have been reported by at least 82 countries worldwide, with a regular incremental trend. In order to contain the disease diffusion, risk evaluation is crucial to undertake informed decisions and effective communication campaigns. However, since orthopoxvirus infections so far have attracted low attention, due to the eradication of smallpox 40 years ago, and to the confinement of human monkeypox almost exclusively to endemic areas, several unresolved issues concerning natural history, ecology and pathogenesis remain. To this respect, we identified some open questions and reviewed the relevant literature on monkeypoxvirus and/or related orthopoxviruses. The results will be discussed in the perspective of their relevance to public health decisions, particularly those related to non-pharmacological interventions.
    MeSH term(s) Disease Outbreaks ; Humans ; Mpox (monkeypox)/epidemiology ; Monkeypox virus/genetics ; Public Health ; Smallpox
    Language English
    Publishing date 2022-09-20
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2619676-1
    ISSN 2235-2988 ; 2235-2988
    ISSN (online) 2235-2988
    ISSN 2235-2988
    DOI 10.3389/fcimb.2022.1005955
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Emerging viral infections in immunocompromised patients: A great challenge to better define the role of immune response.

    Agrati, Chiara / Bartolini, Barbara / Bordoni, Veronica / Locatelli, Franco / Capobianchi, Maria Rosaria / Di Caro, Antonino / Castilletti, Concetta / Ippolito, Giuseppe

    Frontiers in immunology

    2023  Volume 14, Page(s) 1147871

    Abstract: The immune response to invading pathogens is characterized by the rapid establishment of a complex network of cellular interactions and soluble signals. The correct balancing of activating and regulating pathways and tissue-homing signals determines its ... ...

    Abstract The immune response to invading pathogens is characterized by the rapid establishment of a complex network of cellular interactions and soluble signals. The correct balancing of activating and regulating pathways and tissue-homing signals determines its effectiveness and persistence over time. Emerging viral pathogens have always represented a great challenge to the immune system and an often uncontrolled/imbalanced immune response has been described (e.g. cytokine storm, immune paralysis), contributing to the severity of the disease. Several immune biomarkers and cell subsets have been identified as major players in the cascade of events leading to severe diseases, highlighting the rationale for host-directed intervention strategy. There are millions of immunocompromised pediatric and adult patients worldwide (e.g. transplant recipients, hematologic patients, subjects with primary immune-deficiencies), experiencing an impaired immune reactivity, due to diseases and/or to the medical treatments. The reduced immune reactivity could have two paradoxical non-exclusive effects: a weak protective immunity on one hand, and a reduced contribution to immune-mediated pathogenetic processes on the other hand. In these sensitive contexts, the impact of emerging infections represents a still open issue to be explored with several challenges for immunologists, virologists, physicians and epidemiologists. In this review, we will address emerging infections in immunocompromised hosts, to summarize the available data concerning the immune response profile, its influence on the clinical presentation, the possible contribution of persistent viral shedding in generating new viral variants with improved immune escape features, and the key role of vaccination.
    MeSH term(s) Humans ; Child ; Virus Diseases ; Immunocompromised Host ; Immunity
    Language English
    Publishing date 2023-03-09
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2023.1147871
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: sgRNAs: A SARS-CoV-2 emerging issue.

    Mori, Antonio / Lavezzari, Denise / Pomari, Elena / Deiana, Michela / Piubelli, Chiara / Capobianchi, Maria Rosaria / Castilletti, Concetta

    Aspects of molecular medicine

    2023  Volume 1, Page(s) 100008

    Abstract: Like for other coronaviruses, SARS-CoV-2 gene expression strategy is based on the synthesis of a nested set of subgenomic mRNA species (sgRNAs). These sgRNA are synthesized using a "discontinuous transcription" mechanism that relies on template switching ...

    Abstract Like for other coronaviruses, SARS-CoV-2 gene expression strategy is based on the synthesis of a nested set of subgenomic mRNA species (sgRNAs). These sgRNA are synthesized using a "discontinuous transcription" mechanism that relies on template switching at Transcription Regulatory Sequences (TRS). Both canonical (c-sgRNA) and non-canonical (nc-sgRNA, less numerous) subgenomic RNA species can be produced. Currently, sgRNAs are investigated on the basis of sequence data obtained through next generation sequencing (NGS), and bioinformatic tools are crucial for their identification, characterization and quantification. To date, few software have been developed to this aim, whose reliability and applicability to all the available NGS platforms need to be established, to build confidence on the information resulting from such tools. In fact, these information may be crucial for the in depth elucidation of viral expression strategy, particularly in respect of the significance of nc-sgRNAs, and for the possible use of sgRNAs as potential markers of virus replicative activity in infected patients.
    Language English
    Publishing date 2023-04-16
    Publishing country Netherlands
    Document type Journal Article ; Review
    ISSN 2949-6888
    ISSN (online) 2949-6888
    DOI 10.1016/j.amolm.2023.100008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Detection of recombinant breakpoint in the genome of human enterovirus E11 strain associated with a fatal nosocomial outbreak

    Rueca, Martina / Lanini, Simone / Giombini, Emanuela / Messina, Francesco / Castilletti, Concetta / Ippolito, Giuseppe / Capobianchi, Maria Rosaria / Valli, Maria Beatrice

    Virol J. 2022 Dec., v. 19, no. 1 p.97-97

    2022  

    Abstract: BACKGROUND: The aim of this study was to characterize the genome of a recombinant Enterovirus associated with severe and fatal nosocomial infection; it was typed as Echovirus 11 (E-11) according to the VP1 gene. Enterovirus infection is generally ... ...

    Abstract BACKGROUND: The aim of this study was to characterize the genome of a recombinant Enterovirus associated with severe and fatal nosocomial infection; it was typed as Echovirus 11 (E-11) according to the VP1 gene. Enterovirus infection is generally asymptomatic and self-limited, but occasionally it may progress to a more severe clinical manifestation, as in the case described here. Recombination plays a crucial role in the evolution of Enteroviruses (EVs) and has been recognized as the main driving force behind the emergence of epidemic strains associated with severe infection. Therefore, it is of utmost importance to monitor the circulation of recombinant strains for surveillance purposes. METHODS: Enterovirus-RNA was detected in the serum and liver biopsy of patients involved in the nosocomial cluster by commercial One-Step qRT-PCR method and the Enterovirus strains were isolated in vitro. The EVs typing was determined by analyzing the partial-length of the 5′UTR and VP1 sequences with the web-based open-access Enterovirus Genotyping Tool Version 0.1. The amplicons targeting 5′UTR, VP1 and overlapping fragments of the entire genome were sequenced with the Sanger method. Phylogenetic analysis was performed comparing the VP1 and the full-genome sequences of our strains against an appropriate reference set of Enterovirus prototypes of the Picornaviridae genera and species retrieved from the Enterovirus Genotyping Tool. Recombination analysis was performed using RDP4 software. RESULTS: The Neighbor-Joining tree of the VP1 gene revealed that the 4 patients were infected with an identical molecular variant of Echovirus 11 (E-11). While the phylogenetic and the RDP4 analysis of the full-genome sequences provided evidence that it was a chimeric strain between an E-11 and a Coxsackievirus B (CV-B). CONCLUSIONS: The chimeric structure of the E-11 genome might have contributed to the severe infection and epidemic feature of the strain, but further biological characterizations are needed. The evidence reported in this study, highlights the limit of typing techniques based on the VP1 gene, as they fail to identify the emergence of recombinant strains with potentially more pathogenic or epidemic properties, thus providing only partial information on the epidemiology and pathogenesis of Enteroviruses.
    Keywords Human enterovirus ; Internet ; biopsy ; blood serum ; computer software ; cross infection ; enterovirus Infections ; epidemiology ; genes ; genotyping ; liver ; monitoring ; pathogenesis ; phylogeny
    Language English
    Dates of publication 2022-12
    Size p. 97.
    Publishing place BioMed Central
    Document type Article ; Online
    ZDB-ID 2160640-7
    ISSN 1743-422X
    ISSN 1743-422X
    DOI 10.1186/s12985-022-01821-2
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: In Acute Dengue Infection, High TIM-3 Expression May Contribute to the Impairment of IFNγ Production by Circulating Vδ2 T Cells

    Cimini, Eleonora / Grassi, Germana / Beccacece, Alessia / Casetti, Rita / Castilletti, Concetta / Capobianchi, Maria Rosaria / Nicastri, Emanuele / Agrati, Chiara

    Viruses. 2022 Jan. 12, v. 14, no. 1

    2022  

    Abstract: γδ T cells are innate cells able to quickly eliminate pathogens or infected/tumoral cells by their antiviral and adjuvancy activities. The role of γδ T cells during Dengue Viral Infection (DENV) infection is not fully elucidated. Nevertheless, human ... ...

    Abstract γδ T cells are innate cells able to quickly eliminate pathogens or infected/tumoral cells by their antiviral and adjuvancy activities. The role of γδ T cells during Dengue Viral Infection (DENV) infection is not fully elucidated. Nevertheless, human primary γδ T cells have been shown to kill in vitro DENV-infected cells, thus highlighting their possible antiviral function. The aim of this work was to characterize the phenotype and function of Vδ2 T cells in DENV patients. Fifteen DENV patients were enrolled for this study and peripheral blood mononuclear cells (PBMC) were used to analyze Vδ2-T-cell frequency, differentiation profile, activation/exhaustion status, and functionality by multiparametric flow cytometry. Our data demonstrated that DENV infection was able to significantly reduce Vδ2-T-cell frequency and to increase their activation (CD38 and HLA-DR) and exhaustion markers (PD-1 and TIM-3). Furthermore, Vδ2 T cells showed a reduced capability to produce IFN-γ after phosphoantigenic stimulation that can be associated to TIM-3 expression. Several studies are needed to depict the possible clinical impact of γδ-T-cell impairment on disease severity and to define the antiviral and immunoregulatory activities of γδ T cells in the first phases of infection.
    Keywords dengue ; disease severity ; flow cytometry ; humans ; immunomodulation ; phenotype
    Language English
    Dates of publication 2022-0112
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14010130
    Database NAL-Catalogue (AGRICOLA)

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