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  1. Article: Patient-Derived In Vitro and In Vivo Models of Cancer.

    Claridge, Sally E / Cavallo, Julie-Ann / Hopkins, Benjamin D

    Advances in experimental medicine and biology

    2022  Volume 1361, Page(s) 215–233

    Abstract: Over the last two decades, cancer researchers have taken the promise offered by the Human Genome Project and have expanded its capacity to use sequencing to identify the genomic alterations that give rise to and sustain individual tumors. This expansion ... ...

    Abstract Over the last two decades, cancer researchers have taken the promise offered by the Human Genome Project and have expanded its capacity to use sequencing to identify the genomic alterations that give rise to and sustain individual tumors. This expansion has allowed researchers to identify and target highly recurrent alterations in specific cancer contexts, such as EGFR mutations in non-small cell lung cancer (Lynch et al, N Engl J Med 350:2129-2139, 2004; Sharifnia et al., Proc Natl Acad Sci U S A 111:18661-18666, 2014), BCR-ABL translocations in chronic myeloid leukemia (Deininger, Pharmacol Rev 55:401-423. https://doi.org/10.1124/pr.55.3.4 , 2003; Druker et al, N Engl J Med 344. 1038-1042, 2001; Druker et al, N Engl J Med 344:1031-1037. https://doi.org/10.1056/NEJM200104053441401 , 2001), or HER2 amplifications in breast cancer (Slamon et al, N Engl J Med 344:783-792. https://doi.org/10.1056/NEJM200103153441101 , 2001; Solca et al, Beyond trastuzumab: second-generation targeted therapies for HER-2-positive breast cancer. In: Sibilia M, Zielinski CC, Bartsch R, Grunt TW (eds) Drugs for HER-2-positive breast cancer. Springer, Basel, pp 91-107, 2011). Despite these advances in our capacity to identify the genetic alterations that drive tumor initiation, survival, and proliferation, our ability to target these alterations to provide effective treatment options for patients in need, particularly those with rare or advanced cancers, remains limited (Gould et al, Nat Med 21:431-439. https://doi.org/10.1038/nm.3853 , 2015). Patient-derived models of cancer offer one potential mechanism to overcome this barrier between the bench and bedside. Through the development and testing of patient-derived models of cancer, functional genomics efforts can identify tumor-specific drug sensitivities and thereby provide a connection between tumor genetics and effective therapeutics for patients in need of treatment options.Recognizing that cancer is a multifaceted set of disease states, the development of personalized models of cancer that can be used to compare treatment options, identify tumor-specific vulnerabilities, and guide clinical decision-making has tremendous potential for improving patient outcomes. This chapter will describe a representative set of patient-derived models of cancer, reviewing each of their strengths and weaknesses and highlighting how selecting a model to suit a specific question or context is critical. Each model comes with a unique set of pros and cons, making them more or less appropriate for each specific research or clinical question. As each model can be leveraged to gain new insights into cancer biology, the key to their deployment is to identify the most appropriate model for a specific context, while carefully considering the strengths and limitations of the selected model. When used appropriately, patient-derived models may prove to be the missing link needed to bring the promise of personalized oncology to fruition in the clinic.
    MeSH term(s) Breast Neoplasms ; Carcinoma, Non-Small-Cell Lung ; Female ; Humans ; Lung Neoplasms
    Language English
    Publishing date 2022-02-18
    Publishing country United States
    Document type Journal Article
    ISSN 2214-8019 ; 0065-2598
    ISSN (online) 2214-8019
    ISSN 0065-2598
    DOI 10.1007/978-3-030-91836-1_12
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Non-cell-autonomous cancer progression from chromosomal instability.

    Li, Jun / Hubisz, Melissa J / Earlie, Ethan M / Duran, Mercedes A / Hong, Christy / Varela, Austin A / Lettera, Emanuele / Deyell, Matthew / Tavora, Bernardo / Havel, Jonathan J / Phyu, Su M / Amin, Amit Dipak / Budre, Karolina / Kamiya, Erina / Cavallo, Julie-Ann / Garris, Christopher / Powell, Simon / Reis-Filho, Jorge S / Wen, Hannah /
    Bettigole, Sarah / Khan, Atif J / Izar, Benjamin / Parkes, Eileen E / Laughney, Ashley M / Bakhoum, Samuel F

    Nature

    2023  Volume 620, Issue 7976, Page(s) 1080–1088

    Abstract: Chromosomal instability (CIN) is a driver of cancer ... ...

    Abstract Chromosomal instability (CIN) is a driver of cancer metastasis
    MeSH term(s) Humans ; Benchmarking ; Cell Communication ; Chromosomal Instability ; Colorectal Neoplasms/drug therapy ; Colorectal Neoplasms/genetics ; Colorectal Neoplasms/immunology ; Colorectal Neoplasms/pathology ; Disease Progression ; Melanoma/drug therapy ; Melanoma/genetics ; Melanoma/immunology ; Melanoma/pathology ; Tumor Microenvironment ; Interferon Type I/immunology ; Neoplasm Metastasis ; Endoplasmic Reticulum Stress ; Signal Transduction ; Triple Negative Breast Neoplasms/drug therapy ; Triple Negative Breast Neoplasms/genetics ; Triple Negative Breast Neoplasms/immunology ; Triple Negative Breast Neoplasms/pathology ; Neoplasms/genetics ; Neoplasms/immunology ; Neoplasms/pathology
    Chemical Substances cGAS protein, human (EC 2.7.7.-) ; STING1 protein, human ; Interferon Type I
    Language English
    Publishing date 2023-08-23
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-023-06464-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Keratin 17 in premalignant and malignant squamous lesions of the cervix: proteomic discovery and immunohistochemical validation as a diagnostic and prognostic biomarker.

    Escobar-Hoyos, Luisa F / Yang, Jie / Zhu, Jiawen / Cavallo, Julie-Ann / Zhai, Haiyan / Burke, Stephanie / Koller, Antonius / Chen, Emily I / Shroyer, Kenneth R

    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc

    2013  Volume 27, Issue 4, Page(s) 621–630

    Abstract: Most previously described immunohistochemical markers of cervical high-grade squamous intraepithelial lesion (HSIL) and squamous cell carcinoma may help to improve diagnostic accuracy but have a minimal prognostic value. The goals of the current study ... ...

    Abstract Most previously described immunohistochemical markers of cervical high-grade squamous intraepithelial lesion (HSIL) and squamous cell carcinoma may help to improve diagnostic accuracy but have a minimal prognostic value. The goals of the current study were to identify and validate novel candidate biomarkers that could potentially improve diagnostic and prognostic accuracy for cervical HSIL and squamous cell carcinoma. Microdissected tissue sections from formalin-fixed paraffin-embedded normal ectocervical squamous mucosa, low-grade squamous intraepithelial lesion (LSIL), HSIL and squamous cell carcinoma sections were analyzed by mass spectrometry-based shotgun proteomics for biomarker discovery. The diagnostic specificity of candidate biomarkers was subsequently evaluated by immunohistochemical analysis of tissue microarrays. Among 1750 proteins identified by proteomic analyses, keratin 4 (KRT4) and keratin 17 (KRT17) showed reciprocal patterns of expression in the spectrum of cases ranging from normal ectocervical squamous mucosa to squamous cell carcinoma. Immunohistochemical studies confirmed that KRT4 expression was significantly decreased in squamous cell carcinoma compared with the other diagnostic categories. By contrast, KRT17 expression was significantly increased in HSIL and squamous cell carcinoma compared with normal ectocervical squamous mucosa and LSIL. KRT17 was also highly expressed in immature squamous metaplasia and in endocervical reserve cells but was generally not detected in mature squamous metaplasia. Furthermore, high levels of KRT17 expression were significantly associated with poor survival of squamous cell carcinoma patients (Hazard ratio=14.76, P=0.01). In summary, both KRT4 and KRT17 expressions are related to the histopathology of the cervical squamous mucosa; KRT17 is highly overexpressed in immature squamous metaplasia, in HSIL, and in squamous cell carcinoma and the level of KRT17 in squamous cell carcinoma may help to identify patients who are at greatest risk for cervical cancer mortality.
    MeSH term(s) Adult ; Aged ; Biomarkers, Tumor/analysis ; Carcinoma, Squamous Cell/chemistry ; Carcinoma, Squamous Cell/mortality ; Carcinoma, Squamous Cell/pathology ; Female ; Humans ; Immunohistochemistry ; Kaplan-Meier Estimate ; Keratin-17/analysis ; Keratin-4/analysis ; Metaplasia ; Middle Aged ; Precancerous Conditions/chemistry ; Precancerous Conditions/mortality ; Precancerous Conditions/pathology ; Predictive Value of Tests ; Prognosis ; Proteomics/methods ; Reproducibility of Results ; Squamous Intraepithelial Lesions of the Cervix/metabolism ; Squamous Intraepithelial Lesions of the Cervix/mortality ; Squamous Intraepithelial Lesions of the Cervix/pathology ; Tandem Mass Spectrometry ; Up-Regulation ; Uterine Cervical Neoplasms/chemistry ; Uterine Cervical Neoplasms/mortality ; Uterine Cervical Neoplasms/pathology ; Young Adult
    Chemical Substances Biomarkers, Tumor ; Keratin-17 ; Keratin-4
    Language English
    Publishing date 2013-09-20
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Validation Study
    ZDB-ID 645073-8
    ISSN 1530-0285 ; 0893-3952
    ISSN (online) 1530-0285
    ISSN 0893-3952
    DOI 10.1038/modpathol.2013.166
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Key roles for the lipid signaling enzyme phospholipase d1 in the tumor microenvironment during tumor angiogenesis and metastasis.

    Chen, Qin / Hongu, Tsunaki / Sato, Takanobu / Zhang, Yi / Ali, Wahida / Cavallo, Julie-Ann / van der Velden, Adrianus / Tian, Huasong / Di Paolo, Gilbert / Nieswandt, Bernhard / Kanaho, Yasunori / Frohman, Michael A

    Science signaling

    2012  Volume 5, Issue 249, Page(s) ra79

    Abstract: Angiogenesis inhibitors, which target tumor cells, confer only short-term benefits on tumor growth. We report that ablation of the lipid signaling enzyme phospholipase D1 (PLD1) in the tumor environment compromised the neovascularization and growth of ... ...

    Abstract Angiogenesis inhibitors, which target tumor cells, confer only short-term benefits on tumor growth. We report that ablation of the lipid signaling enzyme phospholipase D1 (PLD1) in the tumor environment compromised the neovascularization and growth of tumors. PLD1 deficiency suppressed the activation of Akt and mitogen-activated protein kinase signaling pathways by vascular endothelial growth factor in vascular endothelial cells, resulting in decreased integrin-dependent cell adhesion to, and migration on, extracellular matrices, as well as reduced tumor angiogenesis in a xenograft model. In addition, mice lacking PLD1 incurred fewer lung metastases than did wild-type mice. Bone marrow transplantation and binding studies identified a platelet-derived mechanism involving decreased tumor cell-platelet interactions, in part because of impaired activation of αIIbβ3 integrin in platelets, which decreased the seeding of tumor cells into the lung parenchyma. Treatment with a small-molecule inhibitor of PLD1 phenocopied PLD1 deficiency, efficiently suppressing both tumor growth and metastasis in mice. These findings reveal that PLD1 in the tumor environment promotes tumor growth and metastasis and, taken together with previous reports on the roles of PLD in tumor cell-intrinsic adaptations to stress, suggest the potential use of PLD inhibitors as cancer therapeutics.
    MeSH term(s) Animals ; Breast Neoplasms/enzymology ; Breast Neoplasms/genetics ; Breast Neoplasms/pathology ; Cell Line, Tumor ; Endothelial Cells/enzymology ; Endothelial Cells/pathology ; Female ; Lung Neoplasms/enzymology ; Lung Neoplasms/genetics ; Lung Neoplasms/pathology ; Lung Neoplasms/secondary ; Mice ; Mice, Knockout ; Neoplasm Metastasis ; Neoplasm Transplantation ; Neovascularization, Pathologic/enzymology ; Neovascularization, Pathologic/genetics ; Neovascularization, Pathologic/pathology ; Phospholipase D/genetics ; Phospholipase D/metabolism ; Signal Transduction ; Transplantation, Heterologous ; Tumor Microenvironment
    Chemical Substances Phospholipase D (EC 3.1.4.4) ; phospholipase D1 (EC 3.1.4.4)
    Language English
    Publishing date 2012-11-06
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2417226-1
    ISSN 1937-9145 ; 1945-0877
    ISSN (online) 1937-9145
    ISSN 1945-0877
    DOI 10.1126/scisignal.2003257
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Chromosomal instability drives metastasis through a cytosolic DNA response.

    Bakhoum, Samuel F / Ngo, Bryan / Laughney, Ashley M / Cavallo, Julie-Ann / Murphy, Charles J / Ly, Peter / Shah, Pragya / Sriram, Roshan K / Watkins, Thomas B K / Taunk, Neil K / Duran, Mercedes / Pauli, Chantal / Shaw, Christine / Chadalavada, Kalyani / Rajasekhar, Vinagolu K / Genovese, Giulio / Venkatesan, Subramanian / Birkbak, Nicolai J / McGranahan, Nicholas /
    Lundquist, Mark / LaPlant, Quincey / Healey, John H / Elemento, Olivier / Chung, Christine H / Lee, Nancy Y / Imielenski, Marcin / Nanjangud, Gouri / Pe'er, Dana / Cleveland, Don W / Powell, Simon N / Lammerding, Jan / Swanton, Charles / Cantley, Lewis C

    Nature

    2018  Volume 553, Issue 7689, Page(s) 467–472

    Abstract: Chromosomal instability is a hallmark of cancer that results from ongoing errors in chromosome segregation during mitosis. Although chromosomal instability is a major driver of tumour evolution, its role in metastasis has not been established. Here we ... ...

    Abstract Chromosomal instability is a hallmark of cancer that results from ongoing errors in chromosome segregation during mitosis. Although chromosomal instability is a major driver of tumour evolution, its role in metastasis has not been established. Here we show that chromosomal instability promotes metastasis by sustaining a tumour cell-autonomous response to cytosolic DNA. Errors in chromosome segregation create a preponderance of micronuclei whose rupture spills genomic DNA into the cytosol. This leads to the activation of the cGAS-STING (cyclic GMP-AMP synthase-stimulator of interferon genes) cytosolic DNA-sensing pathway and downstream noncanonical NF-κB signalling. Genetic suppression of chromosomal instability markedly delays metastasis even in highly aneuploid tumour models, whereas continuous chromosome segregation errors promote cellular invasion and metastasis in a STING-dependent manner. By subverting lethal epithelial responses to cytosolic DNA, chromosomally unstable tumour cells co-opt chronic activation of innate immune pathways to spread to distant organs.
    MeSH term(s) Animals ; Brain Neoplasms/genetics ; Brain Neoplasms/pathology ; Brain Neoplasms/secondary ; Breast Neoplasms/genetics ; Breast Neoplasms/pathology ; Breast Neoplasms/secondary ; Carcinoma, Squamous Cell/genetics ; Carcinoma, Squamous Cell/pathology ; Cell Line ; Chromosomal Instability/genetics ; Chromosome Segregation ; Cytosol/enzymology ; Cytosol/metabolism ; DNA, Neoplasm/metabolism ; Female ; Head and Neck Neoplasms/genetics ; Head and Neck Neoplasms/pathology ; Humans ; Inflammation/genetics ; Inflammation/metabolism ; Membrane Proteins/metabolism ; Mesoderm/metabolism ; Mice ; Micronuclei, Chromosome-Defective ; NF-kappa B/metabolism ; Neoplasm Metastasis/genetics ; Nucleotidyltransferases/metabolism ; Xenograft Model Antitumor Assays
    Chemical Substances DNA, Neoplasm ; Membrane Proteins ; NF-kappa B ; STING1 protein, human ; Nucleotidyltransferases (EC 2.7.7.-) ; cGAS protein, human (EC 2.7.7.-)
    Language English
    Publishing date 2018-01-17
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/nature25432
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis.

    Li, Jun / Duran, Mercedes A / Dhanota, Ninjit / Chatila, Walid K / Bettigole, Sarah E / Kwon, John / Sriram, Roshan K / Humphries, Matthew P / Salto-Tellez, Manuel / James, Jacqueline A / Hanna, Matthew G / Melms, Johannes C / Vallabhaneni, Sreeram / Litchfield, Kevin / Usaite, Ieva / Biswas, Dhruva / Bareja, Rohan / Li, Hao Wei / Martin, Maria Laura /
    Dorsaint, Princesca / Cavallo, Julie-Ann / Li, Peng / Pauli, Chantal / Gottesdiener, Lee / DiPardo, Benjamin J / Hollmann, Travis J / Merghoub, Taha / Wen, Hannah Y / Reis-Filho, Jorge S / Riaz, Nadeem / Su, Shin-San Michael / Kalbasi, Anusha / Vasan, Neil / Powell, Simon N / Wolchok, Jedd D / Elemento, Olivier / Swanton, Charles / Shoushtari, Alexander N / Parkes, Eileen E / Izar, Benjamin / Bakhoum, Samuel F

    Cancer discovery

    2020  Volume 11, Issue 5, Page(s) 1212–1227

    Abstract: Cytosolic DNA is characteristic of chromosomally unstable metastatic cancer cells, resulting in constitutive activation of the cGAS-STING innate immune pathway. How tumors co-opt inflammatory signaling while evading immune surveillance remains unknown. ... ...

    Abstract Cytosolic DNA is characteristic of chromosomally unstable metastatic cancer cells, resulting in constitutive activation of the cGAS-STING innate immune pathway. How tumors co-opt inflammatory signaling while evading immune surveillance remains unknown. Here, we show that the ectonucleotidase ENPP1 promotes metastasis by selectively degrading extracellular cGAMP, an immune-stimulatory metabolite whose breakdown products include the immune suppressor adenosine. ENPP1 loss suppresses metastasis, restores tumor immune infiltration, and potentiates response to immune checkpoint blockade in a manner dependent on tumor cGAS and host STING. Conversely, overexpression of wild-type ENPP1, but not an enzymatically weakened mutant, promotes migration and metastasis, in part through the generation of extracellular adenosine, and renders otherwise sensitive tumors completely resistant to immunotherapy. In human cancers, ENPP1 expression correlates with reduced immune cell infiltration, increased metastasis, and resistance to anti-PD-1/PD-L1 treatment. Thus, cGAMP hydrolysis by ENPP1 enables chromosomally unstable tumors to transmute cGAS activation into an immune-suppressive pathway. SIGNIFICANCE: Chromosomal instability promotes metastasis by generating chronic tumor inflammation. ENPP1 facilitates metastasis and enables tumor cells to tolerate inflammation by hydrolyzing the immunotransmitter cGAMP, preventing its transfer from cancer cells to immune cells.
    MeSH term(s) Animals ; Humans ; Hydrolysis ; Immunotherapy ; Mice ; Mice, Inbred BALB C ; Neoplasm Metastasis ; Neoplasms/metabolism ; Neoplasms/pathology ; Neoplasms/therapy ; Nucleotides, Cyclic/metabolism ; Tumor Escape
    Chemical Substances Nucleotides, Cyclic ; cyclic guanosine monophosphate-adenosine monophosphate
    Language English
    Publishing date 2020-12-28
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2625242-9
    ISSN 2159-8290 ; 2159-8274
    ISSN (online) 2159-8290
    ISSN 2159-8274
    DOI 10.1158/2159-8290.CD-20-0387
    Database MEDical Literature Analysis and Retrieval System OnLINE

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