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  1. Article: A Mutation Threshold for Cooperative Takeover.

    Champagne-Ruel, Alexandre / Charbonneau, Paul

    Life (Basel, Switzerland)

    2022  Volume 12, Issue 2

    Abstract: One of the leading theories for the origin of life includes the hypothesis according to which life would have evolved as cooperative networks of molecules. Explaining cooperation-and particularly, its emergence in favoring the evolution of life-bearing ... ...

    Abstract One of the leading theories for the origin of life includes the hypothesis according to which life would have evolved as cooperative networks of molecules. Explaining cooperation-and particularly, its emergence in favoring the evolution of life-bearing molecules-is thus a key element in describing the transition from nonlife to life. Using agent-based modeling of the iterated prisoner's dilemma, we investigate the emergence of cooperative behavior in a stochastic and spatially extended setting and characterize the effects of inheritance and variability. We demonstrate that there is a mutation threshold above which cooperation is-counterintuitively-selected, which drives a dramatic and robust cooperative takeover of the whole system sustained consistently up to the error catastrophe, in a manner reminiscent of typical phase transition phenomena in statistical physics. Moreover, our results also imply that one of the simplest conditional cooperative strategies, "Tit-for-Tat", plays a key role in the emergence of cooperative behavior required for the origin of life.
    Language English
    Publishing date 2022-02-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662250-6
    ISSN 2075-1729
    ISSN 2075-1729
    DOI 10.3390/life12020254
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Enthalpy-entropy compensation of atomic diffusion originates from softening of low frequency phonons.

    Gelin, Simon / Champagne-Ruel, Alexandre / Mousseau, Normand

    Nature communications

    2020  Volume 11, Issue 1, Page(s) 3977

    Abstract: Experimental data accumulated over more than 120 years show not only that diffusion coefficients of impurities ordinarily obey the Arrhenius law in crystalline solids, but also that diffusion pre-exponential factors measured in a same solid increase ... ...

    Abstract Experimental data accumulated over more than 120 years show not only that diffusion coefficients of impurities ordinarily obey the Arrhenius law in crystalline solids, but also that diffusion pre-exponential factors measured in a same solid increase exponentially with activation energies. This so-called compensation effect has been argued to result from a universal positive linear relationship between entropic contributions and energy barriers to diffusion. However, no physical model of entropy has ever been successfully tested against experimental compensation data. Here, we solve this decades-old problem by demonstrating that atomistically computed harmonic vibrational entropic contributions account for most of compensation effects in silicon and aluminum. We then show that, on average, variations of atomic interactions along diffusion reaction paths simultaneously soften low frequency phonons and stiffen high frequency ones; because relative frequency variations are larger in the lower region of the spectrum, softening generally prevails over stiffening and entropy ubiquitously increases with energy.
    Language English
    Publishing date 2020-08-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-020-17812-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Book ; Online: What it takes to solve the Origin(s) of Life

    OoLEN / Asche, Silke / Bautista, Carla / Boulesteix, David / Champagne-Ruel, Alexandre / Mathis, Cole / Markovitch, Omer / Peng, Zhen / Adams, Alyssa / Dass, Avinash Vicholous / Buch, Arnaud / Camprubi, Eloi / Colizzi, Enrico Sandro / Colón-Santos, Stephanie / Dromiack, Hannah / Erastova, Valentina / Garcia, Amanda / Grimaud, Ghjuvan / Halpern, Aaron /
    Harrison, Stuart A / Jordan, Seán F. / Jia, Tony Z / Kahana, Amit / Kolchinsky, Artemy / Moron-Garcia, Odin / Mizuuchi, Ryo / Nan, Jingbo / Orlova, Yuliia / Pearce, Ben K. D. / Paschek, Klaus / Preiner, Martina / Pinna, Silvana / Rodríguez-Román, Eduardo / Schwander, Loraine / Sharma, Siddhant / Smith, Harrison B. / Vieira, Andrey / Xavier, Joana C.

    An integrated review of techniques

    2023  

    Abstract: Understanding the origin(s) of life (OoL) is a fundamental challenge for science in the 21st century. Research on OoL spans many disciplines, including chemistry, physics, biology, planetary sciences, computer science, mathematics and philosophy. The ... ...

    Abstract Understanding the origin(s) of life (OoL) is a fundamental challenge for science in the 21st century. Research on OoL spans many disciplines, including chemistry, physics, biology, planetary sciences, computer science, mathematics and philosophy. The sheer number of different scientific perspectives relevant to the problem has resulted in the coexistence of diverse tools, techniques, data, and software in OoL studies. This has made communication between the disciplines relevant to the OoL extremely difficult because the interpretation of data, analyses, or standards of evidence can vary dramatically. Here, we hope to bridge this wide field of study by providing common ground via the consolidation of tools and techniques rather than positing a unifying view on how life emerges. We review the common tools and techniques that have been used significantly in OoL studies in recent years. In particular, we aim to identify which information is most relevant for comparing and integrating the results of experimental analyses into mathematical and computational models. This review aims to provide a baseline expectation and understanding of technical aspects of origins research, rather than being a primer on any particular topic. As such, it spans broadly -- from analytical chemistry to mathematical models -- and highlights areas of future work that will benefit from a multidisciplinary approach to tackling the mystery of life's origin. Ultimately, we hope to empower a new generation of OoL scientists by reviewing how they can investigate life's origin, rather than dictating how to think about the problem.
    Keywords Quantitative Biology - Populations and Evolution
    Subject code 501
    Publishing date 2023-08-22
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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