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  1. AU="Changwei Shao"
  2. AU="Tosi, N" AU="Tosi, N"
  3. AU="Machado, E"
  4. AU="Bertuccio, Francesco"
  5. AU="Zareba, Franciszek"
  6. AU="Kobayashi, Takahiro"
  7. AU="Khadadah, Sulaiman"
  8. AU="Renard, Patricia"
  9. AU=Jewell Nicholas P
  10. AU="Huikun Hong"
  11. AU="Bodo, Juraj"
  12. AU="Starr, Lindsey A"
  13. AU="Hao Yu"
  14. AU="Weinberger, D R"
  15. AU=Reiter Russel J
  16. AU="Rutkove, Seward B."
  17. AU="Vallorani, Luciana"
  18. AU="Hashimoto, Norikazu"
  19. AU="Lassaigne, C"
  20. AU="Ozturk, Serefnur"
  21. AU="Ruiz, Asier"
  22. AU="Abd-Alrazaq, Alaa"
  23. AU=Sardana Girish
  24. AU="Rutkowski, Robert" AU="Rutkowski, Robert"
  25. AU="Satti, Muniza Manshad"
  26. AU="Maalampi, J."
  27. AU=Forrest Christopher B
  28. AU="Steger, Klaus"
  29. AU=Tremaine W J
  30. AU="Pitha, Paula M"
  31. AU="Carmen Ruiz de Almodóvar"
  32. AU="Qiu, Xudong"
  33. AU="Groh, M"
  34. AU="Defres, S"
  35. AU="Khurana, Navneet"
  36. AU="Yanshan Yang"
  37. AU=Brouillet Emmanuel AU=Brouillet Emmanuel
  38. AU="Rajput, Sandeep"
  39. AU="Mansfield, Shawn D"
  40. AU="Isolan, Cecilia"
  41. AU="Li, Yiran"
  42. AU="Kang, Weechang"
  43. AU="Landoni, Elisa"
  44. AU=McCubbin Keith I AU=McCubbin Keith I
  45. AU="Jessica Bijsterbosch"
  46. AU="Dela Cruz, Charles S."
  47. AU="Yoo, Jennifer"
  48. AU="Berger, Miriam B"
  49. AU="Carlson, Jeffrey R"

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  1. Artikel ; Online: A Potential Role of the Translation Elongation Factor eef1a1 in Gonadal High-Temperature Perception in Chinese Tongue Sole ( Cynoglossus semilaevis )

    Qian Wang / Qian Liu / Wenxiu Ma / Rui Wang / Shuo Li / Zhongdian Dong / Changwei Shao

    Animals, Vol 12, Iss 1603, p

    2022  Band 1603

    Abstract: The eukaryotic translation elongation factor 1 alpha ( eef1a ) gene has a well-defined role in protein synthesis. However, its role in external temperature perception and internal sex differentiation and development is still unclear. In this study, ... ...

    Abstract The eukaryotic translation elongation factor 1 alpha ( eef1a ) gene has a well-defined role in protein synthesis. However, its role in external temperature perception and internal sex differentiation and development is still unclear. In this study, eef1a1 was identified and functionally analyzed in Chinese tongue sole ( Cynoglossus semilaevis ). The eef1a1 cDNA, 1809 bp in length, had a 1386 bp open reading frame (ORF) that encoded a 461 amino acid polypeptide containing one EF-1_alpha domain. eef1a1 expression levels were investigated across different tissues and during gonadal development. In the gonad, eef1a1 showed a sexually dimorphic expression pattern with a statistically higher expression level in the ovary than in the testis from 6 months postfertilization to 3 years postfertilization. Under high temperature (28 °C) treatment during C. semilaevis sex differentiation (from 30 days postfertilization to 3 months postfertilization), eef1a1 was statistically down-regulated in males, while the difference was not detected in females. In addition, the dual-luciferase assay exhibited that eef1a1 can respond to high temperature rapidly. Based on these results, C. semilaevis eef1a1 might have a dual role in the perception of external temperature changes and sex differentiation regulation.
    Schlagwörter eef1a1 ; high temperature ; sexual response ; sex differentiation ; gonad ; Cynoglossus semilaevis ; Veterinary medicine ; SF600-1100 ; Zoology ; QL1-991
    Thema/Rubrik (Code) 570
    Sprache Englisch
    Erscheinungsdatum 2022-06-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  2. Artikel ; Online: The chromosome-level genome of Cherax quadricarinatus

    Honglin Chen / Rui Zhang / Feng Liu / Changwei Shao / Fangfang Liu / Weidong Li / Jindong Ren / Baolong Niu / Haipeng Liu / Bao Lou

    Scientific Data, Vol 10, Iss 1, Pp 1-

    2023  Band 7

    Abstract: Abstract Red claw crayfish (Cherax quadricarinatus) is an aquatic crustacean with considerable potential for the commercial culture and an ideal model for studying the mechanism of sex determination. To provide better genomic resources, we assembled a ... ...

    Abstract Abstract Red claw crayfish (Cherax quadricarinatus) is an aquatic crustacean with considerable potential for the commercial culture and an ideal model for studying the mechanism of sex determination. To provide better genomic resources, we assembled a chromosome-level genome with a size of 5.26 Gb and contig N50 of 144.33 kb. Nearly 90% of sequences were anchored to 100 chromosomes, which represents the high-quality crustacean genome with the largest number of chromosomes ever reported. The genome contained 78.69% repeat sequences and 20,460 protein-coding genes, of which 82.40% were functionally annotated. This chromosome-scale genome would be a valuable reference for assemblies of other complex genomes and studies of evolution in crustaceans.
    Schlagwörter Science ; Q
    Sprache Englisch
    Erscheinungsdatum 2023-04-01T00:00:00Z
    Verlag Nature Portfolio
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  3. Artikel ; Online: Publisher Correction

    Honglin Chen / Rui Zhang / Feng Liu / Changwei Shao / Fangfang Liu / Weidong Li / Jindong Ren / Baolong Niu / Haipeng Liu / Bao Lou

    Scientific Data, Vol 10, Iss 1, Pp 1-

    The chromosome-level genome of Cherax quadricarinatus

    2023  Band 1

    Schlagwörter Science ; Q
    Sprache Englisch
    Erscheinungsdatum 2023-05-01T00:00:00Z
    Verlag Nature Portfolio
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  4. Artikel ; Online: Comprehensive CircRNA Profiling and Selection of Key CircRNAs Reveal the Potential Regulatory Roles of CircRNAs throughout Ovarian Development and Maturation in Cynoglossus semilaevis

    Jing Li / Bao Shi / Chongnv Wang / Changwei Shao / Xuezhou Liu / Daiqiang Zhang

    Biology, Vol 10, Iss 830, p

    2021  Band 830

    Abstract: CircRNAs are novel endogenous non-coding small RNAs involved in the regulation of multiple biological processes. However, little is known regarding circRNAs in ovarian development and maturation of fish. Our study, for the first time, provides the genome- ...

    Abstract CircRNAs are novel endogenous non-coding small RNAs involved in the regulation of multiple biological processes. However, little is known regarding circRNAs in ovarian development and maturation of fish. Our study, for the first time, provides the genome-wide overview of the types and relative abundances of circRNAs in tongue sole tissues during three ovarian developmental stages. We detected 6790 circRNAs in the brain, 5712 in the pituitary gland, 4937 in the ovary and 4160 in the liver. Some circRNAs exhibit tissue-specific expression, and qRT-PCR largely confirmed 6 differentially expressed (DE) circRNAs. Gene Ontology and KEGG pathway analyses of DE mRNAs were performed. Some DE circRNA parental genes were closely associated with biological processes in key signalling pathways and may play essential roles in ovarian development and maturation. We found that the selected circRNAs were involved in 10 pathways. RNase R digestion experiment and Sanger sequencing verified that the circRNA had a ring structure and was RNase R resistant. qRT-PCR results largely confirmed differential circRNA expression patterns from the RNA-seq data. These findings indicate that circRNAs are widespread in terms of present in production-related tissues of tongue sole with potentially important regulatory roles in ovarian development and maturation.
    Schlagwörter RNA-seq ; CircRNA ; Cynoglossus semilaevis ; ovarian maturation ; reproduction ; Biology (General) ; QH301-705.5
    Thema/Rubrik (Code) 616
    Sprache Englisch
    Erscheinungsdatum 2021-08-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  5. Artikel ; Online: Transcriptome Analysis Indicates Immune Responses against Vibrio harveyi in Chinese Tongue Sole ( Cynoglossus semilaevis )

    Xianghui Zhang / Xiancai Hao / Wenxiu Ma / Tengfei Zhu / Zhihua Zhang / Qian Wang / Kaiqiang Liu / Changwei Shao / Hong-Yan Wang

    Animals, Vol 12, Iss 1144, p

    2022  Band 1144

    Abstract: Pathogenic infection of fishes is an important constraining factor affecting marine aquaculture. Insufficient understanding of the molecular mechanisms has affected the diagnosis and corresponding treatment. Here, we reported the dynamic changes of gene ... ...

    Abstract Pathogenic infection of fishes is an important constraining factor affecting marine aquaculture. Insufficient understanding of the molecular mechanisms has affected the diagnosis and corresponding treatment. Here, we reported the dynamic changes of gene expression patterns in the Chinese tongue sole kidney at 16 h, 48 h, 72 h and 96 h after Vibrio harveyi infection. In total, 366, 214, 115 and 238 differentially expressed genes were obtained from the 16 h−vs. −C, 48 h−vs. −C, 72 h−vs. −C and 96 h−vs. −C group comparisons, respectively. KEGG enrichment analysis revealed rapid up-regulation of several immune-related pathways, including IL-17, TNF and TLR signaling pathway. More importantly, time-series analyses of transcriptome showed that immune genes were specifically up-regulated in a short period of time and then decreased. The expression levels of chemokines increased after infection and reached a peak at 16 h. Specifically, Jak-STAT signaling pathway played a crucial role in the regulation during Vibrio harveyi infection. In the later stages of infection, genes in the neuroendocrine pathway, such as glucocorticoid-related genes, were activated in the kidney, indicating a close connection between the immune system and neuroendocrine system. Our dynamic transcriptome analyses provided profound insight into the gene expression profile and investigation of immunogenetic mechanisms of Chinese tongue sole.
    Schlagwörter Chinese tongue sole ; Vibrio harveyi ; immune response ; transcriptome ; Veterinary medicine ; SF600-1100 ; Zoology ; QL1-991
    Thema/Rubrik (Code) 570
    Sprache Englisch
    Erscheinungsdatum 2022-04-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  6. Artikel ; Online: ZetaSuite

    Yajing Hao / Shuyang Zhang / Changwei Shao / Junhui Li / Guofeng Zhao / Dong-Er Zhang / Xiang-Dong Fu

    Genome Biology, Vol 23, Iss 1, Pp 1-

    computational analysis of two-dimensional high-throughput data from multi-target screens and single-cell transcriptomics

    2022  Band 31

    Abstract: Abstract Two-dimensional high-throughput data have become increasingly common in functional genomics studies, which raises new challenges in data analysis. Here, we introduce a new statistic called Zeta, initially developed to identify global splicing ... ...

    Abstract Abstract Two-dimensional high-throughput data have become increasingly common in functional genomics studies, which raises new challenges in data analysis. Here, we introduce a new statistic called Zeta, initially developed to identify global splicing regulators from a two-dimensional RNAi screen, a high-throughput screen coupled with high-throughput functional readouts, and ZetaSuite, a software package to facilitate general application of the Zeta statistics. We compare our approach with existing methods using multiple benchmarked datasets and then demonstrate the broad utility of ZetaSuite in processing public data from large-scale cancer dependency screens and single-cell transcriptomics studies to elucidate novel biological insights.
    Schlagwörter Zeta statistics ; two-dimensional RNAi screening ; Single-cell RNA-seq ; Cancer dependency ; Cancer checkpoint ; Biology (General) ; QH301-705.5 ; Genetics ; QH426-470
    Thema/Rubrik (Code) 004
    Sprache Englisch
    Erscheinungsdatum 2022-07-01T00:00:00Z
    Verlag BMC
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  7. Artikel ; Online: Cloning of the Maternal Effector Gene org and Its Regulation by lncRNA ORG-AS in Chinese Tongue Sole ( Cynoglossus semilaevis )

    Xiaona Zhao / Bo Feng / Qian Wang / Lili Tang / Qian Liu / Wenxiu Ma / Chenghua Li / Changwei Shao

    International Journal of Molecular Sciences, Vol 23, Iss 15, p

    2022  Band 8605

    Abstract: Maternal effector genes (MEGs) encode maternal RNA and protein, accumulating in the cytoplasm of oocytes. During oocyte development, MEGs participate in oocyte meiosis and promote oocyte development. And MEGs can also regulate maternal transcriptome ... ...

    Abstract Maternal effector genes (MEGs) encode maternal RNA and protein, accumulating in the cytoplasm of oocytes. During oocyte development, MEGs participate in oocyte meiosis and promote oocyte development. And MEGs can also regulate maternal transcriptome stability and promote maternal–zygotic transition (MTZ) in early embryonic development. Long noncoding RNAs (lncRNAs), as new epigenetic regulators, can regulate gene expression at both the transcriptional and post-transcriptional levels through cis - or trans -regulation. The oogenesis-related gene org is a germ-cell-specific gene in fish, but the role of org in embryonic development and oogenesis has rarely been studied, and the knowledge of the lncRNA-mediated regulation of org is limited. In this study, we cloned and identified the org gene of Chinese tongue sole ( Cynoglossus semilaevis ), and we identified a lncRNA named lncRNA ORG-anti-sequence (ORG-AS), located at the reverse overlapping region of org . The results of qRT-PCR and FISH demonstrated that org was highly expressed during the early stages of embryonic development and oogenesis and was located in the cytoplasm of oocytes. ORG-AS was expressed at low levels in the ovary and colocalized with org in the cytoplasm of oocytes. In vitro experiments showed that overexpression of ORG-AS inhibited org expression. These results suggest that org , as a MEG in C. semilaevis , participates in the MTZ and the oogenesis. The lncRNA ORG-AS negatively regulates the gene expression of org through trans -regulation. These new findings broaden the function of MEGs in embryonic development and the oogenesis of bony fish and prove that lncRNAs are important molecular factors regulating org .
    Schlagwörter maternal effector genes ; oogenesis ; org ; lncRNA ; maternal–zygotic transition ; Chinese tongue sole ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
    Thema/Rubrik (Code) 028
    Sprache Englisch
    Erscheinungsdatum 2022-08-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  8. Artikel ; Online: Transcriptome Analysis Revealed the Early Heat Stress Response in the Brain of Chinese Tongue Sole ( Cynoglossus semilaevis )

    Yue Wang / Chengcheng Su / Qian Liu / Xiancai Hao / Shenglei Han / Lucas B. Doretto / Ivana F. Rosa / Yanjing Yang / Changwei Shao / Qian Wang

    Animals, Vol 14, Iss 1, p

    2023  Band 84

    Abstract: As a common influencing factor in the environment, temperature greatly influences the fish that live in the water all their life. The essential economic fish Chinese tongue sole ( Cynoglossus semilaevis ), a benthic fish, will experience both ... ...

    Abstract As a common influencing factor in the environment, temperature greatly influences the fish that live in the water all their life. The essential economic fish Chinese tongue sole ( Cynoglossus semilaevis ), a benthic fish, will experience both physiological and behavioral changes due to increases in temperature. The brain, as the central hub of fish and a crucial regulatory organ, is particularly sensitive to temperature changes and will be affected. However, previous research has mainly concentrated on the impact of temperature on the gonads of C. semilaevis . Instead, our study examines the brain using transcriptomics to investigate specific genes and pathways that can quickly respond to temperature changes. The fish were subjected to various periods of heat stress (1 h, 2 h, 3 h, and 5 h) before extracting the brain for transcriptome analysis. After conducting transcriptomic analyses, we identified distinct genes and pathways in males and females. The pathways were mainly related to cortisol synthesis and secretion, neuroactive ligand–receptor interactions, TGF beta signaling pathway, and JAK/STAT signaling pathway, while the genes included the HSP family, tshr , c-fos , c-jun , cxcr4 , camk2b , and igf2 . Our study offers valuable insights into the regulation mechanisms of the brain’s response to temperature stress.
    Schlagwörter Cynoglossus semilaevis ; transcriptome ; heat shock ; gene ; Veterinary medicine ; SF600-1100 ; Zoology ; QL1-991
    Thema/Rubrik (Code) 570
    Sprache Englisch
    Erscheinungsdatum 2023-12-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  9. Artikel: High-Temperature Corrosion Behavior of SiBCN Fibers for Aerospace Applications

    Ji, Xiaoyu / Changwei Shao / Hao Wang / Shanshan Wang

    ACS applied materials & interfaces. 2018 May 16, v. 10, no. 23

    2018  

    Abstract: Amorphous SiBCN fibers possessing superior stability against oxidation have become a desirable candidate for high-temperature aerospace applications. Currently, investigations on the high-temperature corrosion behavior of these fibers for the application ...

    Abstract Amorphous SiBCN fibers possessing superior stability against oxidation have become a desirable candidate for high-temperature aerospace applications. Currently, investigations on the high-temperature corrosion behavior of these fibers for the application in high-heat engines are insufficient. Here, our polymer-derived SiBCN fibers were corroded at 1400 °C in air and simulated combustion environments. The fibers’ structural evolution after corrosion in two different conditions and the potential mechanisms are investigated. It shows that the as-prepared SiBCN fibers mainly consist of amorphous networks of SiN3C, SiN4, B–N hexatomic rings, free carbon clusters, and BN2C units. High-resolution transmission electron microscopy cross-section observations combined with energy-dispersive spectrometry/electron energy-loss spectroscopy analysis exhibit a trilayer structure with no detectable cracks for fibers after corrosion, including the outermost SiO2 layer, the h-BN grain-contained interlayer, and the uncorroded fiber core. A high percentage of water vapor contained in the simulated combustion environment triggers the formation of abundant α-cristobalite nanoparticles dispersing in the amorphous SiO2 phase, which are absent in fibers corroded in air. The formation of h-BN grains in the interlayer could be ascribed to the sacrificial effects of free carbon clusters, Si–C, and Si–N units reacting with oxygen diffusing inward, which protects h-BN grains formed by networks of B–N hexatomic rings in original SiBCN fibers. These results improve our understanding of the corrosion process of SiBCN fibers in a high-temperature oxygen- and water-rich atmosphere.
    Schlagwörter air ; boron nitride ; carbon ; combustion ; corrosion ; grains ; nanoparticles ; oxygen ; silica ; spectroscopy ; transmission electron microscopy ; water vapor
    Sprache Englisch
    Erscheinungsverlauf 2018-0516
    Umfang p. 19712-19720.
    Erscheinungsort American Chemical Society
    Dokumenttyp Artikel
    ISSN 1944-8252
    DOI 10.1021/acsami.8b04497
    Datenquelle NAL Katalog (AGRICOLA)

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  10. Artikel ; Online: Oryzias curvinotus in Sanya Does Not Contain the Male Sex-Determining Gene dmy

    Zhongdian Dong / Xueyou Li / Zebin Yao / Chun Wang / Yusong Guo / Qian Wang / Changwei Shao / Zhongduo Wang

    Animals, Vol 11, Iss 1327, p

    2021  Band 1327

    Abstract: Hainan medaka ( Oryzias curvinotus ) is distributed in the coastal waters of the South China Sea and is able to adapt to a wide range of salinities. In this study, we characterized O . curvinotus in Sanya River (SY-medaka), which lacks dmy (a male sex- ... ...

    Abstract Hainan medaka ( Oryzias curvinotus ) is distributed in the coastal waters of the South China Sea and is able to adapt to a wide range of salinities. In this study, we characterized O . curvinotus in Sanya River (SY-medaka), which lacks dmy (a male sex-determining gene in O. latipes and O. curvinotus ). In a comparison of SY-medaka and Gaoqiao medaka (GQ-medaka), the morphological difference between the two populations does not reach the subspecies level and they can be considered two geographic populations of O. curvinotus . A mitochondrial cytochrome oxidase subunit I (CoI) sequence alignment showed that the sequence identities between SY-medaka and other geographic populations of O. curvinotus are as high as 95%. A phylogenetic analysis of the mitochondrial genome also indicated that SY-medaka belongs to O. curvinotus . Molecular marker-based genetic sex assays and whole genome re-sequencing showed that SY-medaka does not contain dmy . Further, in RNA-Seq analyses of the testis and ovaries of sexually mature SY-medaka, dmy expression was not detected. We speculate that high temperatures resulted in the loss of dmy in SY-medaka during evolution, or the lineage has another sex-determining gene. This study provides a valuable dataset for elucidating the mechanism underlying sex determination in Oryzias genus and advances research on functional genomics or reproduction biology in O. curvinotus .
    Schlagwörter Oryzias curvinotus ; dmy ; sex determining gene ; RNA-Seq ; Veterinary medicine ; SF600-1100 ; Zoology ; QL1-991
    Thema/Rubrik (Code) 590
    Sprache Englisch
    Erscheinungsdatum 2021-05-01T00:00:00Z
    Verlag MDPI AG
    Dokumenttyp Artikel ; Online
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