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  1. Article ; Online: Lymph node ratio is a prognostic indicator for locally advanced esophageal squamous cell carcinoma after neoadjuvant immunochemotherapy.

    Chen, Pengcheng / Wang, Liang / Yang, Xun / Feng, Jifeng

    Biomolecules & biomedicine

    2024  Volume 24, Issue 1, Page(s) 159–169

    Abstract: The lymph node ratio (LNR) is regarded as a prognostic indicator in esophageal cancer (EC), but its applicability to neoadjuvant immunochemotherapy (NICT) in esophageal squamous cell carcinoma (ESCC) remains unexplored. This retrospective study, ... ...

    Abstract The lymph node ratio (LNR) is regarded as a prognostic indicator in esophageal cancer (EC), but its applicability to neoadjuvant immunochemotherapy (NICT) in esophageal squamous cell carcinoma (ESCC) remains unexplored. This retrospective study, conducted between 2019 and 2021, analyzed ESCC patients who underwent radical esophagectomy following NICT. Patients were divided into two groups based on their LNR values according to the X-tile software: Low-LNR group (LNR 0-10%) and High-LNR group (LNR 10-100%). The association between LNR and clinical outcomes in ESCC after NICT were analyzed. A total of 212 ESCC patients who underwent surgery after NICT were included in this study, among which, 169 (79.7%) and 43 (20.3%) cases were allocated to the Low- and High-LNR groups, respectively. Pathologic complete response (PCR) was observed in 28.3% (60/212) of the overall cohort. Patients in the Low-LNR group demonstrated a significantly improved 3-year overall survival (OS) (81.7% vs 55.3%; P < 0.001) and disease-free survival (DFS) (79.9% vs 37.4%; P < 0.001). These findings were consistent among those with non-PCR (3-year DFS was 73.7% vs 37.4%; P < 0.001, and the 3-year OS was 78.9% vs 55.3%; P < 0.001, respectively). High LNR was associated with a 4.013-fold increased risk of relapse and a 7.026-fold elevated risk of death. Compared to the post-neoadjuvant therapy pathologic lymph nodes staging (ypN), LNR exhibited similar prognostic capabilities for DFS and OS. To the best of our knowledge, this study is the first to investigate the prognostic value of LNR in ESCC after NICT, suggesting that LNR may serve as a viable alternative to the ypN stage for prognostication in ESCC patients treated with NICT.
    MeSH term(s) Humans ; Prognosis ; Esophageal Squamous Cell Carcinoma/therapy ; Neoadjuvant Therapy ; Esophageal Neoplasms/drug therapy ; Retrospective Studies ; Lymph Node Ratio ; Neoplasm Staging ; Neoplasm Recurrence, Local/pathology
    Language English
    Publishing date 2024-01-03
    Publishing country Bosnia and Herzegovina
    Document type Journal Article
    ISSN 2831-090X
    ISSN (online) 2831-090X
    DOI 10.17305/bb.2023.9435
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Standardizing trait selection in Mendelian randomization studies concerning sarcopenia.

    Liu, Mingchong / Chen, Pengcheng / Yang, Chensong / Sun, Guixin

    Journal of cachexia, sarcopenia and muscle

    2024  

    Language English
    Publishing date 2024-03-23
    Publishing country Germany
    Document type Letter
    ZDB-ID 2586864-0
    ISSN 2190-6009 ; 2190-5991
    ISSN (online) 2190-6009
    ISSN 2190-5991
    DOI 10.1002/jcsm.13463
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  3. Article ; Online: The quantity, function and anti-tumor effect of Mucosal associated invariant T cells in patients with bladder cancer.

    Zhang, Baodan / Chen, Pengcheng / Zhu, Jie / Lu, Yongyong

    International immunopharmacology

    2024  Volume 133, Page(s) 111892

    Abstract: Background: Bladder cancer (BC), a prevalent malignancy in the urinary system, often poses challenges for effective treatment. Immunotherapy, harnessing the immune system, has exhibited promise in early-stage clinical trials. Mucosal associated ... ...

    Abstract Background: Bladder cancer (BC), a prevalent malignancy in the urinary system, often poses challenges for effective treatment. Immunotherapy, harnessing the immune system, has exhibited promise in early-stage clinical trials. Mucosal associated invariant T (MAIT) cells, a subset of immune cells implicated in various diseases, including certain cancer, have yet to be explored in BC patients. We aimed to investigate the quantity, function, and anti-tumor effects of MAIT cells in BC patients.
    Methods: A total of 75 newly diagnosed BC patients and 183 healthy volunteers were included. Blood samples were collected and analyzed to evaluate the quantity and function of MAIT cells. Surgical resection provided BC tissues for further analysis, and the clinical features of BC tumors were collected and their relationship with MAIT cells was explored.
    Results: MAIT cells were identified in both healthy individuals and BC patients. The proportion of MAIT cells in the peripheral blood of BC patients did not significantly differ from that of healthy controls. However, the study revealed a correlation between the proportion of IFN-γ producing MAIT cells and tumor number and invasion in BC patients. Furthermore, MAIT cells exhibited cytotoxic effects on BC cells in vitro and in vivo.
    Conclusions: This study sheds light on the role of MAIT cells in BC. While the quantity of MAIT cells showed no significant change in BC patients, their functional attributes and association with tumor characteristics suggest their potential as an immunotherapy target in BC treatment.
    MeSH term(s) Humans ; Urinary Bladder Neoplasms/immunology ; Urinary Bladder Neoplasms/pathology ; Urinary Bladder Neoplasms/therapy ; Mucosal-Associated Invariant T Cells/immunology ; Male ; Female ; Middle Aged ; Aged ; Animals ; Interferon-gamma/metabolism ; Adult ; Cell Line, Tumor ; Immunotherapy/methods ; Mice ; Cytotoxicity, Immunologic
    Chemical Substances Interferon-gamma (82115-62-6)
    Language English
    Publishing date 2024-04-24
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2043785-7
    ISSN 1878-1705 ; 1567-5769
    ISSN (online) 1878-1705
    ISSN 1567-5769
    DOI 10.1016/j.intimp.2024.111892
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Engineering of 4-hydroxyphenylacetate 3-hydroxylase derived from Pseudomonas aeruginosa for the ortho-hydroxylation of ferulic acid.

    Sun, Ping / Zheng, Pu / Chen, Pengcheng / Wu, Dan / Xu, Shuping

    International journal of biological macromolecules

    2024  Volume 264, Issue Pt 1, Page(s) 130545

    Abstract: Polyphenolic compounds have natural antioxidant properties, and their antioxidant activity is usually related to the number and position of hydroxyls. Here, we successfully applied the engineered 4-hydroxyphenylacetate 3-hydroxylases (4HPA3Hs) derived ... ...

    Abstract Polyphenolic compounds have natural antioxidant properties, and their antioxidant activity is usually related to the number and position of hydroxyls. Here, we successfully applied the engineered 4-hydroxyphenylacetate 3-hydroxylases (4HPA3Hs) derived from Pseudomonas aeruginosa to catalyze ferulic acid (FA) synthesis of ortho-hydroxyferulic acid (5-hydroxyferulic acid, 5-OHFA). Through optimization of co-expression, the oxygenase component (PaHpaB) and the reductase component (PaHpaC) in E. coli, and optimization of whole-cell catalytic conditions, the engineered strain BC catalyzed ortho-hydroxylation of 2 g/L of FA with a yield of 75 % from 39 %. Through tunnel engineering of PaHpaB, the obtained mutants F301A and Q376A almost completely transformed 2 g/L of FA. Further, a multiple mutant L214A/F301A/Q376A converted 4 g/L FA into 5-OHFA within 12 h, and the yield reached 99.9 %, which was approximately 2.39-fold of the wild type. The k
    MeSH term(s) Mixed Function Oxygenases/chemistry ; Pseudomonas aeruginosa/genetics ; Pseudomonas aeruginosa/metabolism ; Hydroxylation ; Escherichia coli/metabolism ; Coumaric Acids ; Phenylacetates
    Chemical Substances Mixed Function Oxygenases (EC 1.-) ; ferulic acid (AVM951ZWST) ; 4-hydroxyphenylacetate (3233-32-7) ; Coumaric Acids ; Phenylacetates
    Language English
    Publishing date 2024-02-29
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2024.130545
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Engineered Zea mays phenylalanine ammonia-lyase for improve the catalytic efficiency of biosynthesis trans-cinnamic acid and p-coumaric acid.

    Zheng, Jiangmei / Sun, Ruobin / Wu, Dan / Chen, Pengcheng / Zheng, Pu

    Enzyme and microbial technology

    2024  Volume 176, Page(s) 110423

    Abstract: Phenylalanine ammonia-lyase (PAL) plays a pivotal role in the biosynthesis of phenylalanine. PAL from Zea mays (ZmPAL2) exhibits a bi-function of direct deamination of L-phenylalanine (L-Phe) or L-tyrosine(-L-Tyr) to form trans-cinnamic acid or p- ... ...

    Abstract Phenylalanine ammonia-lyase (PAL) plays a pivotal role in the biosynthesis of phenylalanine. PAL from Zea mays (ZmPAL2) exhibits a bi-function of direct deamination of L-phenylalanine (L-Phe) or L-tyrosine(-L-Tyr) to form trans-cinnamic acid or p-coumaric acid. trans-Cinnamic acid and p-coumaric acid are mainly used in flavors and fragrances, food additives, pharmaceutical and other fields. Here, the Activity of ZmPAL2 toward L-Phe or L-Tyr was improved by using semi-rational and rational designs. The catalytic efficiency (k
    MeSH term(s) Phenylalanine Ammonia-Lyase/genetics ; Phenylalanine Ammonia-Lyase/chemistry ; Zea mays ; Phenylalanine ; Tyrosine ; Cinnamates ; Coumaric Acids
    Chemical Substances Phenylalanine Ammonia-Lyase (EC 4.3.1.24) ; cinnamic acid (140-10-3) ; p-coumaric acid (IBS9D1EU3J) ; Phenylalanine (47E5O17Y3R) ; Tyrosine (42HK56048U) ; Cinnamates ; Coumaric Acids
    Language English
    Publishing date 2024-02-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 423729-8
    ISSN 1879-0909 ; 0141-0229
    ISSN (online) 1879-0909
    ISSN 0141-0229
    DOI 10.1016/j.enzmictec.2024.110423
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: High-Yield Natural Vanillin Production by

    Wang, Guanna / Zheng, Pu / Wu, Dan / Chen, Pengcheng

    ACS omega

    2023  Volume 8, Issue 15, Page(s) 14113–14121

    Abstract: Vanillin is an aromatic compound, which is widely used in food flavoring, beverages, perfumes, and pharmaceuticals. ...

    Abstract Vanillin is an aromatic compound, which is widely used in food flavoring, beverages, perfumes, and pharmaceuticals.
    Language English
    Publishing date 2023-04-03
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.3c00790
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  7. Article ; Online: Development of highly efficient and specific base editors in Actinobacillus succinogenes for enhancing succinic acid production.

    Chen, Chunmei / Zheng, Pu / Chen, Pengcheng / Wu, Dan

    Biotechnology for biofuels and bioproducts

    2023  Volume 16, Issue 1, Page(s) 192

    Abstract: The production of bio-succinic acid (SA) from renewable feedstocks is a promising and sustainable approach to mitigating the high carbon emissions associated with the current energy crisis. Actinobacillus succinogenes was recognized as one of the most ... ...

    Abstract The production of bio-succinic acid (SA) from renewable feedstocks is a promising and sustainable approach to mitigating the high carbon emissions associated with the current energy crisis. Actinobacillus succinogenes was recognized as one of the most promising SA producers; however, lack of genetic background and the scarcity of genetic manipulation tools hinder the improvement in A. succinogenes by metabolic engineering. Here, for the first time, we successfully developed a series of A. succinogenes base editors (BEs) mediated by the fusion of Cas9 nickase and deaminase, including CBE, ABE, Td-GABE, and Td-CBE. Among these, ABE and Td-CBE based on a fusion of Cas9 nickase and TadA-8e variant (Escherichia coli TadA) can efficiently convert A to G and C to T, respectively, with editing efficiencies of up to 100%. We also investigated the multiplex base editing of ABE and Td-CBE, and the results showed that the editing efficiency of ABE reached 100% for six sites and 10% editing efficiency of Td-CBE for two sites. In addition, cytosine base editors were applied to inactivate hypothetical sugar and SA transporters of A. succinogenes. We found that the inactivation of Asuc_0914 encoding sucrose-specific IIBC subunit enhanced SA production, while the inactivation of hypothetical SA transporters Asuc_0715 and Asuc_0716 significantly reduced SA production. Therefore, the tools have great application potential in the metabolic engineering of A. succinogenes.
    Language English
    Publishing date 2023-12-12
    Publishing country England
    Document type Journal Article
    ISSN 2731-3654
    ISSN (online) 2731-3654
    DOI 10.1186/s13068-023-02443-8
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  8. Article: Numerical Investigation on the Ballistic Performance of Semi-Cylindrical Nacre-like Composite Shells under High-Velocity Impact.

    Yang, Huiwei / Gao, Dongyang / Chen, Pengcheng / Lu, Guoyun

    Materials (Basel, Switzerland)

    2023  Volume 16, Issue 10

    Abstract: The nacre has excellent impact resistance performance, and it is attracting attention in the field of aerospace composite research. Inspired by the layered structure from nacre, semi-cylindrical nacre-like composite shells of brittle silicon carbide ... ...

    Abstract The nacre has excellent impact resistance performance, and it is attracting attention in the field of aerospace composite research. Inspired by the layered structure from nacre, semi-cylindrical nacre-like composite shells of brittle silicon carbide ceramic (SiC) and aluminum (AA5083-H116) were established. Two types of tablet arrangements (regular hexagonal and Voronoi polygons) of the composites were designed, and the same size of ceramic and aluminum shell were established for the impact resistance analyzed numerically. In order to better compare the resistance performance of the four types of structures under different impact velocity, the following parameters were analyzed including energy variation, damage characteristic, bullet residual velocity, and semi-cylindrical shell displacement. The results show that the semi-cylindrical ceramic shells have higher rigidity and ballistic limit, but the severe vibration after impact causes penetrating cracks, and the whole structure failure occurred eventually. The nacre-like composites have higher ballistic limits than semi-cylindrical aluminum shells, and the impact of bullets only causes local failure. In the same conditions, the impact resistance of regular hexagons is better than Voronoi polygons. The research analyzes the resistance characteristic of nacre-like composites and single materials, and provides a reference for the design of nacre-like structures.
    Language English
    Publishing date 2023-05-12
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2487261-1
    ISSN 1996-1944
    ISSN 1996-1944
    DOI 10.3390/ma16103699
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  9. Article ; Online: Sterical Structure of Molecules Determined by Scanning Probe Microscopy.

    Chen, Pengcheng / Fan, Dingxin / Yao, Nan

    Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada

    2023  Volume 29, Issue Supplement_1, Page(s) 583

    Language English
    Publishing date 2023-08-23
    Publishing country England
    Document type Journal Article
    ZDB-ID 1385710-1
    ISSN 1435-8115 ; 1431-9276
    ISSN (online) 1435-8115
    ISSN 1431-9276
    DOI 10.1093/micmic/ozad067.281
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  10. Article ; Online: 4-Hydroxyphenylacetate 3-Hydroxylase (4HPA3H): A Vigorous Monooxygenase for Versatile

    Sun, Ping / Xu, Shuping / Tian, Yuan / Chen, Pengcheng / Wu, Dan / Zheng, Pu

    International journal of molecular sciences

    2024  Volume 25, Issue 2

    Abstract: 4-Hydroxyphenylacetate 3-hydroxylase (4HPA3H) is a long-known class of two-component flavin-dependent monooxygenases from bacteria, including an oxygenase component (EC 1.14.14.9) and a reductase component (EC 1.5.1.36), with the latter being accountable ...

    Abstract 4-Hydroxyphenylacetate 3-hydroxylase (4HPA3H) is a long-known class of two-component flavin-dependent monooxygenases from bacteria, including an oxygenase component (EC 1.14.14.9) and a reductase component (EC 1.5.1.36), with the latter being accountable for delivering the cofactor (reduced flavin) essential for
    MeSH term(s) Mixed Function Oxygenases/metabolism ; Hydroxylation ; Biological Products ; Flavins/chemistry ; Phenylacetates
    Chemical Substances Mixed Function Oxygenases (EC 1.-) ; 4-hydroxyphenylacetate (3233-32-7) ; Biological Products ; Flavins ; Phenylacetates
    Language English
    Publishing date 2024-01-19
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25021222
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