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  1. Article ; Online: Risk factors differ for Gram-negative surgical site infection following hip and knee arthroplasty: an observational study from a national surveillance system.

    Chhibber, Aakash V / Roberts, Sally A / Grae, Nikki / Morris, Arthur J

    The New Zealand medical journal

    2022  Volume 135, Issue 1550, Page(s) 47–61

    Abstract: Aim: To describe risk factors for surgical site infection (SSI) caused by aerobic Gram-negative organisms after hip and knee arthroplasty.: Method: Publicly funded hip and knee arthroplasties (performed between 1 July 2013 and 31 December 2017) that ... ...

    Abstract Aim: To describe risk factors for surgical site infection (SSI) caused by aerobic Gram-negative organisms after hip and knee arthroplasty.
    Method: Publicly funded hip and knee arthroplasties (performed between 1 July 2013 and 31 December 2017) that developed SSIs were compared to those that did not. SSIs were grouped by causative organism: Gram-negative (Pseudomonas spp. or enteric Gram-negative bacilli) or staphylococcal (pure or mixed growth of Staphylococcus spp.). Independent risk factors in each group were identified.
    Results: 24,842 (54%) hip and 20,993 (46%) knee arthroplasties were performed. There were 497 (1.1%) SSIs. Staphylococci were responsible for 233 SSIs (47%) and Gram-negatives were responsible for 73 (15%). Age, sex, body mass index ≥35kg/m2, smoking status, socioeconomic deprivation, American Society of Anesthesiologists classification, revision surgery and prophylactic antibiotic dose were all independent predictors of all-cause SSI. On subgroup analysis, socioeconomic deprivation and Pasifika ethnicity were independent risk factors for Gram-negative SSI, but not staphylococcal SSI.
    Discussion: In this study, socioeconomic deprivation and ethnicity were independent and novel risk factors for Gram-negative SSI following arthroplasty. Some of the SSI risk factors can be modified before arthroplasty (e.g., appropriate timing of prophylactic antibiotics, smoking cessation, weight loss). Non-modifiable risk factors can help identify high-risk procedures where additional pre- and post-operative interventions may be warranted.
    MeSH term(s) Arthroplasty, Replacement, Hip/adverse effects ; Arthroplasty, Replacement, Knee/adverse effects ; Humans ; New Zealand/epidemiology ; Retrospective Studies ; Risk Factors ; Surgical Wound Infection/prevention & control
    Language English
    Publishing date 2022-02-25
    Publishing country New Zealand
    Document type Journal Article ; Observational Study
    ZDB-ID 390590-1
    ISSN 1175-8716 ; 0028-8446 ; 0110-7704
    ISSN (online) 1175-8716
    ISSN 0028-8446 ; 0110-7704
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Evaluation of ssrA-targeted real time PCR for the detection of Bartonella species in human clinical samples and reflex sequencing for species-level identification.

    Vesty, Anna / Henderson, Gillian / Blakiston, Matthew / Chhibber, Aakash V / Fox-Lewis, Andrew / Roberts, Sally / Basu, Indira

    Pathology

    2022  Volume 54, Issue 4, Page(s) 449–452

    Abstract: The genus Bartonella includes species capable of causing disease in animals and humans. Due to its fastidious nature, direct detection of Bartonella causing human infection relies largely on molecular microbiological methods. Thus, it is imperative that ... ...

    Abstract The genus Bartonella includes species capable of causing disease in animals and humans. Due to its fastidious nature, direct detection of Bartonella causing human infection relies largely on molecular microbiological methods. Thus, it is imperative that diagnostic assays in use have the ability to detect a range of Bartonella species associated with human disease. In this study, we compared the performance of a real time polymerase chain reaction (PCR) assay targeting the ssrA gene to conventional rpoB-targeted PCR and sequencing for detection and differentiation of Bartonella species in human clinical samples. The real time ssrA PCR performed better for non-Bartonella henselae species, detecting B. clarridgeiae and B. quintana DNA in heart valve specimens that were not detected by rpoB PCR, and improved the sensitivity of B. henselae detection in blood specimens. Our findings suggest the real time ssrA PCR assay is suitable for detection and identification of Bartonella species in human clinical specimens.
    MeSH term(s) Animals ; Bartonella/genetics ; Bartonella Infections/diagnosis ; Bartonella Infections/microbiology ; Bartonella henselae/genetics ; DNA, Bacterial/analysis ; Humans ; Real-Time Polymerase Chain Reaction ; Reflex
    Chemical Substances DNA, Bacterial
    Language English
    Publishing date 2022-02-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 7085-3
    ISSN 1465-3931 ; 0031-3025
    ISSN (online) 1465-3931
    ISSN 0031-3025
    DOI 10.1016/j.pathol.2021.10.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Helicobacter cinaedi

    Fox-Lewis, Andrew / Basu, Indira / Vesty, Anna / Henderson, Gillian / Chhibber, Aakash V / Thomas, Mark

    IDCases

    2020  Volume 21, Page(s) e00910

    Abstract: Of the non- ...

    Abstract Of the non-
    Keywords covid19
    Language English
    Publishing date 2020-07-11
    Publishing country Netherlands
    Document type Case Reports
    ZDB-ID 2745454-X
    ISSN 2214-2509
    ISSN 2214-2509
    DOI 10.1016/j.idcr.2020.e00910
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Helicobacter cinaedi bacteremia in a returning traveler

    Fox-Lewis, Andrew / Basu, Indira / Vesty, Anna / Henderson, Gillian / Chhibber, Aakash V. / Thomas, Mark

    IDCases

    Abstract: Of the non‐Helicobacter pylori Helicobacter (NHPH) species, Helicobacter cinaedi is an emerging cause of infection in humans Here we report a novel clinical presentation of H cinaedi infection: a case of fever in a returning traveler A 31 year old ... ...

    Abstract Of the non‐Helicobacter pylori Helicobacter (NHPH) species, Helicobacter cinaedi is an emerging cause of infection in humans Here we report a novel clinical presentation of H cinaedi infection: a case of fever in a returning traveler A 31 year old previously fit and well male presented with onset of fever 24 hours after returning from travel in Singapore and Indonesia Associated symptoms consisted of sore throat, mild shortness of breath, generalized myalgia and arthralgia, headache, and four episodes of loose stools The patient recovered spontaneously without treatment and was discharged After 4 days of incubation, blood cultures grew H cinaedi H cinaedi is a slow-growing fastidious organism poorly detected by some commonly used automated blood culture systems, and difficult to identify using commercial or traditional biochemical identification systems This case illustrates the importance of H cinaedi as an emerging pathogen in immunocompetent patients, with a wide variety of possible clinical presentations The challenges in the microbiological diagnosis of H cinaedi infections lead us to speculate that H cinaedi is an underdiagnosed cause of febrile illness, both in returning travelers and in other clinical settings
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #639284
    Database COVID19

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  5. Article ; Online: Age-related differences in SARS-CoV-2 testing in the Northern Region of New Zealand.

    Chhibber, Aakash V / Muttaiyah, Sharmini / McAuliffe, Gary / Fox-Lewis, Shivani / De Almeida, Mary / Blakiston, Matthew / Playle, Veronica / Fox-Lewis, Andrew / Roberts, Sally

    The New Zealand medical journal

    2020  Volume 133, Issue 1519, Page(s) 89–94

    Abstract: Aim: There is concern the low incidence of coronavirus disease 2019 (COVID-19) in children reflects under-testing in this population. This study sought to describe the age-distribution of SARS-CoV-2 testing in the Northern Region of New Zealand.: ... ...

    Abstract Aim: There is concern the low incidence of coronavirus disease 2019 (COVID-19) in children reflects under-testing in this population. This study sought to describe the age-distribution of SARS-CoV-2 testing in the Northern Region of New Zealand.
    Methods: A retrospective single-centre review of all SARS-CoV-2 tests performed at LabPLUS, Auckland City Hospital, between 12 February and 18 April 2020.
    Results: A total of 22,333 tests were performed, with 313 (1.40%) positive results. The age-adjusted SARS-CoV-2 testing rate was three times higher in adults than in children. The overall proportion of positive tests was lower in children (0.86%) than adults (1.45%). However, within the paediatric population the proportion of tests positive differed significantly between those <10 years old (0.08%) and those 10-14 years old (2.6%).
    Conclusion: The lower proportion of tests positive in children <10 years of age suggests they are appropriately tested relative to their rates of disease. A large high school-associated cluster makes the higher proportion of tests positive in children 10-14 years old difficult to interpret. Older children may have a higher risk of infection and increasing testing in intermediate and high school aged children may be indicated.
    MeSH term(s) Adolescent ; Adult ; Age Distribution ; Betacoronavirus/isolation & purification ; COVID-19 ; COVID-19 Testing ; Child ; Clinical Laboratory Techniques/methods ; Clinical Laboratory Techniques/statistics & numerical data ; Cluster Analysis ; Coronavirus Infections/diagnosis ; Coronavirus Infections/epidemiology ; Coronavirus Infections/physiopathology ; Female ; Humans ; Male ; New Zealand/epidemiology ; Pandemics ; Pneumonia, Viral/diagnosis ; Pneumonia, Viral/epidemiology ; Pneumonia, Viral/physiopathology ; Retrospective Studies ; SARS-CoV-2
    Keywords covid19
    Language English
    Publishing date 2020-07-31
    Publishing country New Zealand
    Document type Journal Article
    ZDB-ID 390590-1
    ISSN 1175-8716 ; 0028-8446 ; 0110-7704
    ISSN (online) 1175-8716
    ISSN 0028-8446 ; 0110-7704
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Age-related differences in SARS-CoV-2 testing in the Northern Region of New Zealand

    Chhibber, Aakash V. / Muttaiyah, Sharmini / McAuliffe, Gary / Fox-Lewis, Shivani / De Almeida, Mary / Blakiston, Matthew / Playle, Veronica / Fox-Lewis, Andrew / Roberts, Sally

    The New Zealand medical journal

    Abstract: AIM: There is concern the low incidence of coronavirus disease 2019 (COVID-19) in children reflects under-testing in this population This study sought to describe the age-distribution of SARS-CoV-2 testing in the Northern Region of New Zealand METHODS: A ...

    Abstract AIM: There is concern the low incidence of coronavirus disease 2019 (COVID-19) in children reflects under-testing in this population This study sought to describe the age-distribution of SARS-CoV-2 testing in the Northern Region of New Zealand METHODS: A retrospective single-centre review of all SARS-CoV-2 tests performed at LabPLUS, Auckland City Hospital, between 12 February and 18 April 2020 RESULTS: A total of 22,333 tests were performed, with 313 (1 40%) positive results The age-adjusted SARS-CoV-2 testing rate was three times higher in adults than in children The overall proportion of positive tests was lower in children (0 86%) than adults (1 45%) However, within the paediatric population the proportion of tests positive differed significantly between those <10 years old (0 08%) and those 10-14 years old (2 6%) CONCLUSION: The lower proportion of tests positive in children <10 years of age suggests they are appropriately tested relative to their rates of disease A large high school-associated cluster makes the higher proportion of tests positive in children 10-14 years old difficult to interpret Older children may have a higher risk of infection and increasing testing in intermediate and high school aged children may be indicated
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #708558
    Database COVID19

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