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  1. Article ; Online: Predicted functional analysis of rumen microbiota suggested the underlying mechanisms of the postpartum subacute ruminal acidosis in Holstein cows.

    Tsuchiya, Yoshiyuki / Chiba, Ena / Kimura, Atsushi / Kawashima, Kenji / Hasunuma, Toshiya / Kushibiki, Shiro / Kim, Yo-Han / Sato, Shigeru

    Journal of veterinary science

    2023  Volume 24, Issue 2, Page(s) e27

    Abstract: Background: The relationships between the postpartum subacute ruminal acidosis (SARA) occurrence and predicted bacterial functions during the periparturient period are still not clear in Holstein cows.: Objectives: The present study was performed to ... ...

    Abstract Background: The relationships between the postpartum subacute ruminal acidosis (SARA) occurrence and predicted bacterial functions during the periparturient period are still not clear in Holstein cows.
    Objectives: The present study was performed to investigate the alterations of rumen fermentation, bacterial community structure, and predicted bacterial functional pathways in Holstein cows.
    Methods: Holstein cows were divided into the SARA (n = 6) or non-SARA (n = 4) groups, depending on whether they developed SARA during the first 2 weeks after parturition. Reticulo-ruminal pH was measured continuously during the study period. Reticulo-ruminal fluid samples were collected 3 weeks prepartum, and 2 and 6 weeks postpartum, and blood samples were collected 3 weeks before, 0, 2, 4 and 6 weeks postpartum.
    Results: The postpartum decline in 7-day mean reticulo-ruminal pH was more severe and longer-lasting in the SARA group compared with the non-SARA group. Changes in predicted functional pathways were identified in the SARA group. A significant upregulation of pathway "PWY-6383" associated with Mycobacteriaceae species was identified at 3 weeks after parturition in the SARA group. Significantly identified pathways involved in denitrification (DENITRIFICATION-PWY and PWY-7084), detoxification of reactive oxygen and nitrogen species (PWY1G-0), and starch degradation (PWY-622) in the SARA group were downregulated.
    Conclusions: The postpartum SARA occurrence is likely related to the predicted functions of rumen bacterial community rather than the alterations of rumen fermentation or fluid bacterial community structure. Therefore, our result suggests the underlying mechanisms, namely functional adaptation of bacterial community, causing postpartum SARA in Holstein cows during the periparturient period.
    MeSH term(s) Female ; Cattle ; Animals ; Rumen/metabolism ; Diet/veterinary ; Cattle Diseases/microbiology ; Postpartum Period ; Acidosis/veterinary ; Acidosis/metabolism ; Microbiota ; Lactation/physiology
    Language English
    Publishing date 2023-04-03
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2125308-0
    ISSN 1976-555X ; 1976-555X
    ISSN (online) 1976-555X
    ISSN 1976-555X
    DOI 10.4142/jvs.22246
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Notice of RETRACTION: "Changes in rumen fermentation, bacterial community, and predicted functional pathway in Holstein cows with and without subacute ruminal acidosis during the periparturient period" (J. Dairy Sci. 103:4702-4716).

    Tsuchiya, Yoshiyuki / Chiba, Ena / Sugino, Toshihisa / Kawashima, Kenji / Hasunuma, Toshiya / Kushibiki, Shiro / Kim, Yo-Han / Sato, Shigeru

    Journal of dairy science

    2022  Volume 104, Issue 1, Page(s) 1232

    Language English
    Publishing date 2022-05-31
    Publishing country United States
    Document type Retraction of Publication
    ZDB-ID 242499-x
    ISSN 1525-3198 ; 0022-0302
    ISSN (online) 1525-3198
    ISSN 0022-0302
    DOI 10.3168/jds.2021-104-1-1232
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Liver transcriptome response to periparturient hormonal and metabolic changes depends on the postpartum occurrence of subacute ruminal acidosis in Holstein cows.

    Tsuchiya, Yoshiyuki / Chiba, Ena / Sugino, Toshihisa / Kawashima, Kenji / Kushibiki, Shiro / Kizaki, Keiichiro / Kim, Yo-Han / Sato, Shigeru

    Physiological genomics

    2021  Volume 53, Issue 7, Page(s) 285–294

    Abstract: We investigated changes in rumen fermentation, peripheral blood metabolites and hormones, and hepatic transcriptomic dynamics in Holstein cows with and those without subacute ruminal acidosis (SARA) during the periparturient period. Sixteen multiparous ... ...

    Abstract We investigated changes in rumen fermentation, peripheral blood metabolites and hormones, and hepatic transcriptomic dynamics in Holstein cows with and those without subacute ruminal acidosis (SARA) during the periparturient period. Sixteen multiparous Holstein cows were categorized in the SARA (
    MeSH term(s) Acidosis/metabolism ; Acidosis/veterinary ; Animals ; Body Weight ; Cattle ; Cattle Diseases/metabolism ; Female ; Gene Expression Profiling ; Gene Expression Regulation ; Hormones/blood ; Hydrogen-Ion Concentration ; Liver/physiology ; Parturition ; Postpartum Period ; Rumen/metabolism ; Rumen/physiopathology ; Stomach Diseases/metabolism ; Stomach Diseases/veterinary
    Chemical Substances Hormones
    Language English
    Publishing date 2021-06-07
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2038823-8
    ISSN 1531-2267 ; 1094-8341
    ISSN (online) 1531-2267
    ISSN 1094-8341
    DOI 10.1152/physiolgenomics.00048.2021
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Changes in rumen fermentation, bacterial community, and predicted functional pathway in Holstein cows with and without subacute ruminal acidosis during the periparturient period

    Tsuchiya, Yoshiyuki / Chiba, Ena / Sugino, Toshihisa / Kawashima, Kenji / Hasunuma, Toshiya / Kushibiki, Shiro / Kim, Yo-Han / Sato, Shigeru

    American Dairy Science Association Journal of dairy science. 2020 May, v. 103, no. 5

    2020  

    Abstract: We investigated changes in rumen fermentation, the fluid bacterial community, and predicted functional pathway profiles in Holstein cows with and those without subacute ruminal acidosis (SARA) during the periparturient period. Eighteen multiparous ... ...

    Abstract We investigated changes in rumen fermentation, the fluid bacterial community, and predicted functional pathway profiles in Holstein cows with and those without subacute ruminal acidosis (SARA) during the periparturient period. Eighteen multiparous Holstein cows categorized in the SARA (n = 9) or non-SARA (n = 9) groups depending on whether they developed SARA during the 2 wk after parturition. Reticulo-ruminal pH was measured continuously throughout the study. Rumen fluid and blood samples were collected 3 wk before and 2 and 6 wk after parturition, with an additional blood sample collected during the 0 and 4 wk after parturition. The 7-d mean reticulo-ruminal pH was significantly decreased in both groups postpartum compared with prepartum, with a greater and longer lasting change in the SARA group. The postpartum total volatile fatty acid concentration was significantly higher in the non-SARA than in SARA cows. Rumen bacterial richness and diversity were not affected by the periparturient period, but the non-SARA group had a significantly higher Simpson diversity index postpartum. No significant change was observed in the composition of major bacterial phyla or genera during the periparturient period. Among 17 operational taxonomic units (OTU) shared by all cows, the relative abundances of OTU36 (genus Pseudobutyrivibrio) in the SARA group and OTU4 (genus Prevotella) in the non-SARA group decreased significantly during the postpartum period compared with prepartum. In contrast, non-SARA cows had more diverse core bacterial OTU community including 23 additional OTU than those with SARA including 3 additional OTU (40 vs. 20 OTU). The OTU36 was significantly correlated with the proportion of iso-valeric acid (r = −0.353), and OTU4 was significantly correlated with the 7-d mean reticulo-ruminal pH (r = 0.432) and the proportions of acetic acid (r = 0.353) and propionic acid (r = −0.380). Prepartum, OTU2 (genus Prevotella) was the only OTU that differed significantly between the 2 groups. Changes in predicted functional pathway were primarily identified during the postpartum period, with 2 pathways upregulated at 3 wk prepartum and 24 upregulated and 34 downregulated at 6 wk postpartum in the SARA group. Our results suggest that SARA incidence is not strictly related to changes in rumen fermentation or fluid bacterial community structure, but the predicted functional pathways of bacterial communities showed late responses to a postpartum decrease in reticulo-ruminal pH. Therefore, postpartum predicted functional pathway analysis may indicate the underlying mechanisms causing SARA in Holstein cows during the periparturient period.
    Keywords Holstein ; Prevotella ; Pseudobutyrivibrio ; acetic acid ; bacterial communities ; blood sampling ; community structure ; dairy cows ; fatty acid composition ; pH ; parturition ; postpartum period ; propionic acid ; rumen bacteria ; rumen fermentation ; rumen fluids ; ruminal acidosis ; volatile fatty acids
    Language English
    Dates of publication 2020-05
    Size p. 4702-4716.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 242499-x
    ISSN 1525-3198 ; 0022-0302
    ISSN (online) 1525-3198
    ISSN 0022-0302
    DOI 10.3168/jds.2019-17546
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Notice of RETRACTION: Changes in rumen fermentation, bacterial community, and predicted functional pathway in Holstein cows with and without subacute ruminal acidosis during the periparturient period.

    Tsuchiya, Yoshiyuki / Chiba, Ena / Sugino, Toshihisa / Kawashima, Kenji / Hasunuma, Toshiya / Kushibiki, Shiro / Kim, Yo-Han / Sato, Shigeru

    publication RETRACTED

    Journal of dairy science

    2020  Volume 103, Issue 5, Page(s) 4702–4716

    MeSH term(s) Acidosis/metabolism ; Acidosis/microbiology ; Acidosis/veterinary ; Animals ; Bacteria/genetics ; Bacteria/isolation & purification ; Cattle ; Cattle Diseases/metabolism ; Cattle Diseases/microbiology ; Diet/veterinary ; Fatty Acids, Volatile/analysis ; Female ; Fermentation ; Gastrointestinal Microbiome ; Hydrogen-Ion Concentration ; Parturition ; Pregnancy ; Prevotella/genetics ; Prevotella/isolation & purification ; Rumen/metabolism ; Rumen/microbiology
    Chemical Substances Fatty Acids, Volatile
    Language English
    Publishing date 2020-03-12
    Publishing country United States
    Document type Journal Article ; Retracted Publication
    ZDB-ID 242499-x
    ISSN 1525-3198 ; 0022-0302
    ISSN (online) 1525-3198
    ISSN 0022-0302
    DOI 10.3168/jds.2019-17546
    Database MEDical Literature Analysis and Retrieval System OnLINE

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