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  1. Article ; Online: Essential role for Batf3-dependent dendritic cells in regulating CD8 T-cell response during SARS-CoV-2 infection.

    Bar-On, Liat / Dekel, Hani / Aftalion, Moshe / Chitlaru, Theodor / Erez, Noam

    PloS one

    2023  Volume 18, Issue 12, Page(s) e0294176

    Abstract: SARS-CoV-2 infection elicits robust CD8 T-cell responses, yet the identity of the mechanisms playing dominant roles in initiating the virus-specific CD8 T-cell responses are largely unknown. In the present study, we interrogate the contribution of the ... ...

    Abstract SARS-CoV-2 infection elicits robust CD8 T-cell responses, yet the identity of the mechanisms playing dominant roles in initiating the virus-specific CD8 T-cell responses are largely unknown. In the present study, we interrogate the contribution of the cDC1 subset to SARS-CoV-2-specific CD8 T-cell immunity. For this purpose, we used a novel murine line which combines the SARS-CoV-2 susceptible K18-hACE2 transgenic and the Batf3 deficient mice which lack the cDC1 subset. We demonstrate that in the absence of cDC1, viral-specific CD8 T-cell responses were severely impaired both in the draining lymph node as well as in the lungs, during the effector phase of SARS-CoV-2 infection. Furthermore, SARS-CoV-2 specific memory CD8 T-cells in the lungs and spleens were also significantly impacted, whereas humoral responses, as well as CD4 T-cells were not affected. Additionally, we demonstrate that the absence of cDC1 subset, and the consequent impaired CD8 T-cell responses, resulted in significant increase in SARS-CoV-2 viral load in the lungs. The conclusions of the study were further independently corroborated in an additional COVID-19 murine model consisting infection with a mouse-adapted SARS-CoV-2 virus. These results underscore a specific role for Batf3-dependent DC in regulating SARS-CoV-2 specific CD8 T-cell responses and may contribute to future vaccine design and immunization strategies.
    MeSH term(s) Animals ; Mice ; CD4-Positive T-Lymphocytes ; CD8-Positive T-Lymphocytes ; COVID-19 ; Dendritic Cells ; SARS-CoV-2
    Chemical Substances SNFT protein, mouse
    Language English
    Publishing date 2023-12-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0294176
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Screening of an FDA-Approved Library for Novel Drugs against

    Gur, David / Chitlaru, Theodor / Mamroud, Emanuelle / Zauberman, Ayelet

    Antibiotics (Basel, Switzerland)

    2021  Volume 10, Issue 1

    Language English
    Publishing date 2021-01-03
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2681345-2
    ISSN 2079-6382
    ISSN 2079-6382
    DOI 10.3390/antibiotics10010040
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Rapid Induction of Protective Immunity against Pneumonic Plague by

    Aftalion, Moshe / Tidhar, Avital / Vagima, Yaron / Gur, David / Zauberman, Ayelet / Holtzman, Tzvi / Makovitzki, Arik / Chitlaru, Theodor / Mamroud, Emanuelle / Levy, Yinon

    Vaccines

    2023  Volume 11, Issue 3

    Abstract: In a recent study, we demonstrated that vaccination with the polymeric F1 capsule antigen of the plague ... ...

    Abstract In a recent study, we demonstrated that vaccination with the polymeric F1 capsule antigen of the plague pathogen
    Language English
    Publishing date 2023-03-02
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2703319-3
    ISSN 2076-393X
    ISSN 2076-393X
    DOI 10.3390/vaccines11030581
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: T Cell Response following Anti-COVID-19 BNT162b2 Vaccination Is Maintained against the SARS-CoV-2 Omicron B.1.1.529 Variant of Concern

    Cohen, Hila / Rotem, Shahar / Elia, Uri / Bilinsky, Gal / Levy, Itzchak / Chitlaru, Theodor / Bar-Haim, Erez

    Viruses. 2022 Feb. 08, v. 14, no. 2

    2022  

    Abstract: The progression of the COVID-19 pandemic has led to the emergence of variants of concern (VOC), which may compromise the efficacy of the currently administered vaccines. Antigenic drift can potentially bring about reduced protective T cell immunity and, ... ...

    Abstract The progression of the COVID-19 pandemic has led to the emergence of variants of concern (VOC), which may compromise the efficacy of the currently administered vaccines. Antigenic drift can potentially bring about reduced protective T cell immunity and, consequently, more severe disease manifestations. To assess this possibility, the T cell responses to the wild-type Wuhan-1 SARS-CoV-2 ancestral spike protein and the Omicron B.1.1.529 spike protein were compared. Accordingly, peripheral blood mononuclear cells (PBMC) were collected from eight healthy volunteers 4–5 months following a third vaccination with BNT162b2, and stimulated with overlapping peptide libraries representing the spike of either the ancestral or the Omicron SARS-CoV-2 virus variants. Quantification of the specific T cells was carried out by a fluorescent ELISPOT assay, monitoring cells secreting interferon-gamma (IFNg), interleukin-10 (IL-10) and interleukin-4 (IL-4). For all the examined individuals, comparable levels of reactivity to both forms of spike protein were determined. In addition, a dominant Th1 response was observed, manifested mainly by IFNg-secreting cells and only limited numbers of IL-10- and IL-4-secreting cells. The data demonstrate stable T cell activity in response to the emerging Omicron variant in the tested individuals; therefore, the protective immunity to the variant following BNT162b2 vaccination is not significantly affected.
    Keywords COVID-19 infection ; Severe acute respiratory syndrome coronavirus 2 ; T-lymphocytes ; antigenic variation ; disease severity ; fluorescence ; immunity ; interferon-gamma ; interleukin-10 ; interleukin-4 ; vaccination ; viruses
    Language English
    Dates of publication 2022-0208
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14020347
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: A Novel Approach to Vaccine Development: Concomitant Pathogen Inactivation and Host Immune Stimulation by Peroxynitrite.

    Rotem, Shahar / Bar-Haim, Erez / Elia, Uri / Cohen, Hila / Lazar, Shirley / Cohen, Ofer / Chitlaru, Theodor / Gal, Yoav

    Vaccines

    2022  Volume 10, Issue 10

    Abstract: The design of efficient vaccines for long-term protective immunity against pathogens represents an objective of utmost public health priority. In general, live attenuated vaccines are considered to be more effective than inactivated pathogens, yet ... ...

    Abstract The design of efficient vaccines for long-term protective immunity against pathogens represents an objective of utmost public health priority. In general, live attenuated vaccines are considered to be more effective than inactivated pathogens, yet potentially more reactogenic. Accordingly, inactivation protocols which do not compromise the pathogen's ability to elicit protective immunity are highly beneficial. One of the sentinel mechanisms of the host innate immune system relies on the production of reactive nitrogen intermediates (RNI), which efficiently inactivate pathogens. Peroxynitrite (PN) is a prevalent RNI, assembled spontaneously upon the interaction of nitric oxide (NO) with superoxide. PN exerts its bactericidal effect by via the efficient oxidation of a broad range of biological molecules. Furthermore, the interaction of PN with proteins results in structural/chemical modifications, such as the oxidation of tryptophan, tyrosine, and cysteine residues, as well as the formation of carbonyl, dityrosine, and nitrotyrosine (NT). In addition to their role in innate immunity, these PN-mediated modifications of pathogen components may also augment the antigenicity of pathogen peptides and proteins, hence contributing to specific humoral responses. In the study reported here, a novel approach for vaccine development, consisting of pathogen inactivation by PN, combined with increased immunity of NT-containing peptides, is implemented as a proof-of-concept for vaccination against the intracellular pathogen
    Language English
    Publishing date 2022-09-22
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2703319-3
    ISSN 2076-393X
    ISSN 2076-393X
    DOI 10.3390/vaccines10101593
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: T Cell Response following Anti-COVID-19 BNT162b2 Vaccination Is Maintained against the SARS-CoV-2 Omicron B.1.1.529 Variant of Concern.

    Cohen, Hila / Rotem, Shahar / Elia, Uri / Bilinsky, Gal / Levy, Itzchak / Chitlaru, Theodor / Bar-Haim, Erez

    Viruses

    2022  Volume 14, Issue 2

    Abstract: The progression of the COVID-19 pandemic has led to the emergence of variants of concern (VOC), which may compromise the efficacy of the currently administered vaccines. Antigenic drift can potentially bring about reduced protective T cell immunity and, ... ...

    Abstract The progression of the COVID-19 pandemic has led to the emergence of variants of concern (VOC), which may compromise the efficacy of the currently administered vaccines. Antigenic drift can potentially bring about reduced protective T cell immunity and, consequently, more severe disease manifestations. To assess this possibility, the T cell responses to the wild-type Wuhan-1 SARS-CoV-2 ancestral spike protein and the Omicron B.1.1.529 spike protein were compared. Accordingly, peripheral blood mononuclear cells (PBMC) were collected from eight healthy volunteers 4-5 months following a third vaccination with BNT162b2, and stimulated with overlapping peptide libraries representing the spike of either the ancestral or the Omicron SARS-CoV-2 virus variants. Quantification of the specific T cells was carried out by a fluorescent ELISPOT assay, monitoring cells secreting interferon-gamma (IFNg), interleukin-10 (IL-10) and interleukin-4 (IL-4). For all the examined individuals, comparable levels of reactivity to both forms of spike protein were determined. In addition, a dominant Th1 response was observed, manifested mainly by IFNg-secreting cells and only limited numbers of IL-10- and IL-4-secreting cells. The data demonstrate stable T cell activity in response to the emerging Omicron variant in the tested individuals; therefore, the protective immunity to the variant following BNT162b2 vaccination is not significantly affected.
    MeSH term(s) Adult ; Antibodies, Neutralizing/blood ; Antibodies, Neutralizing/immunology ; Antibodies, Viral/blood ; Antibodies, Viral/immunology ; BNT162 Vaccine/administration & dosage ; BNT162 Vaccine/immunology ; COVID-19/immunology ; COVID-19/prevention & control ; Cytokines/analysis ; Cytokines/immunology ; Enzyme-Linked Immunospot Assay ; Female ; Humans ; Interferon-gamma/analysis ; Interferon-gamma/immunology ; Male ; Middle Aged ; SARS-CoV-2/immunology ; Spike Glycoprotein, Coronavirus/immunology ; T-Lymphocytes/immunology ; Th1 Cells/immunology ; Young Adult
    Chemical Substances Antibodies, Neutralizing ; Antibodies, Viral ; Cytokines ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; Interferon-gamma (82115-62-6) ; BNT162 Vaccine (N38TVC63NU)
    Language English
    Publishing date 2022-02-08
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14020347
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Global transcriptomic analysis of Francisella tularensis SchuS4 differentially expressed genes in response to doxycycline or ciprofloxacin exposure.

    Zaide, Galia / Cohen-Gihon, Inbar / Shifman, Ohad / Israeli, Ofir / Aftalion, Moshe / Maoz, Sharon / Chitlaru, Theodor / Ber, Raphael / Zvi, Anat / Steinberger-Levy, Ida

    BMC genomic data

    2023  Volume 24, Issue 1, Page(s) 23

    Abstract: Objective: As part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification of changes in expression levels of specific marker genes and gene sets, cultures of the virulent ... ...

    Abstract Objective: As part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification of changes in expression levels of specific marker genes and gene sets, cultures of the virulent bacterial strain Francisella tularensis SchuS4 were grown in the presence of inhibitory/sub-inhibitory concentrations of either ciprofloxacin or doxycycline and their transcriptomic profiles were elucidated using differential expression analysis followed by functional annotation.
    Data description: RNA sequencing was performed to identify differentially expressed genes (DEGs) in response to exposure of F. tularensis SchuS4 to either ciprofloxacin or doxycycline, the antibiotics of choice for Tularemia therapy. Accordingly, RNA samples were collected 2 h post antibiotic exposure and subjected to RNA sequence analysis. Transcriptomic quantification of RNA representing duplicated samples generated highly similar gene expression data. Exposure to sub-inhibitory concentration [0.5 x MIC (minimal inhibitory concentration)] of doxycycline or ciprofloxacin modulated the expression of 237 or 8 genes, respectively, while exposure to an inhibitory concentration (1 x MIC) resulted in the modulation of 583 or 234 genes, respectively. Amongst the genes modulated upon doxycycline exposure upregulation of 31 genes encoding for translation-functions could be distinguished, as well as downregulation of 14 genes encoding for functions involved in DNA transcription and repair. Ciprofloxacin exposure impacted differently the RNA sequence profile of the pathogen, resulting in upregulation of 27 genes encoding mainly DNA replication and repair functions, transmembrane transporters and molecular chaperons. In addition, 15 downregulated genes were involved in translation processes.
    MeSH term(s) Doxycycline/pharmacology ; Francisella tularensis/genetics ; Ciprofloxacin/pharmacology ; Transcriptome/genetics ; Anti-Bacterial Agents/pharmacology ; RNA
    Chemical Substances Doxycycline (N12000U13O) ; Ciprofloxacin (5E8K9I0O4U) ; Anti-Bacterial Agents ; RNA (63231-63-0)
    Language English
    Publishing date 2023-04-19
    Publishing country England
    Document type Journal Article
    ISSN 2730-6844
    ISSN (online) 2730-6844
    DOI 10.1186/s12863-023-01125-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Novel RNA Extraction Method for Dual RNA-seq Analysis of Pathogen and Host in the Early Stages of Yersinia pestis Pulmonary Infection

    Israeli, Ofir / Cohen-Gihon, Inbar / Aftalion, Moshe / Gur, David / Vagima, Yaron / Zauberman, Ayelet / Levy, Yinon / Zvi, Anat / Chitlaru, Theodor / Mamroud, Emanuelle / Tidhar, Avital

    Microorganisms. 2021 Oct. 18, v. 9, no. 10

    2021  

    Abstract: Pneumonic plague, caused by Yersinia pestis, is a rapidly progressing lethal infection. The various phases of pneumonic plague are yet to be fully understood. A well-established way to address the pathology of infectious diseases in general, and ... ...

    Abstract Pneumonic plague, caused by Yersinia pestis, is a rapidly progressing lethal infection. The various phases of pneumonic plague are yet to be fully understood. A well-established way to address the pathology of infectious diseases in general, and pneumonic plague in particular, is to conduct concomitant transcriptomic analysis of the bacteria and the host. The analysis of dual RNA by RNA sequencing technology is challenging, due the difficulties of extracting bacterial RNA, which is overwhelmingly outnumbered by the host RNA, especially at the critical early time points post-infection (prior to 48 h). Here, we describe a novel technique that employed the infusion of an RNA preserving reagent (RNAlater) into the lungs of the animals, through the trachea, under deep anesthesia. This method enabled the isolation of stable dual mRNA from the lungs of mice infected with Y. pestis, as early as 24 h post-infection. The RNA was used for transcriptomic analysis, which provided a comprehensive gene expression profile of both the host and the pathogen.
    Keywords Yersinia pestis ; anesthesia ; gene expression ; pathogens ; plague ; sequence analysis ; transcriptomics
    Language English
    Dates of publication 2021-1018
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms9102166
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: An Improvement in Diagnostic Blood Culture Conditions Allows for the Rapid Detection and Isolation of the Slow Growing Pathogen

    Makdasi, Efi / Atiya-Nasagi, Yafit / Gur, David / Zauberman, Ayelet / Schuster, Ofir / Glinert, Itai / Shmaya, Shlomo / Milrot, Elad / Levy, Haim / Weiss, Shay / Chitlaru, Theodor / Mamroud, Emanuelle / Laskar, Orly

    Pathogens (Basel, Switzerland)

    2022  Volume 11, Issue 2

    Abstract: Plague, caused by the human ... ...

    Abstract Plague, caused by the human pathogen
    Language English
    Publishing date 2022-02-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11020255
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Prolonged Protective Immunity Induced by Mild SARS-CoV-2 Infection of K18-hACE2 Mice.

    Bar-On, Liat / Aftalion, Moshe / Makdasi, Efi / Gur, David / Alcalay, Ron / Cohen, Hila / Beth-Din, Adi / Rosenfeld, Ronit / Achdout, Hagit / Bar-Haim, Erez / Falach, Reut / Chitlaru, Theodor / Cohen, Ofer

    Vaccines

    2022  Volume 10, Issue 4

    Abstract: Longevity of the immune response following viral exposure is an essential aspect of SARS-CoV-2 infection. Mild SARS-CoV-2 infection of K18-hACE2 mice was implemented for evaluating the mounting and longevity of a specific memory immune response. We show ... ...

    Abstract Longevity of the immune response following viral exposure is an essential aspect of SARS-CoV-2 infection. Mild SARS-CoV-2 infection of K18-hACE2 mice was implemented for evaluating the mounting and longevity of a specific memory immune response. We show that the infection of K18-hACE2 mice induced robust humoral and cellular immunity (systemic and local), which persisted for at least six months. Virus-specific T cells and neutralizing antibody titers decreased over time, yet their levels were sufficient to provide sterile immunity against lethal rechallenge six months post-primary infection. The study substantiates the role of naturally induced immunity against SARS-CoV-2 infection for preventing recurring morbidity.
    Language English
    Publishing date 2022-04-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2703319-3
    ISSN 2076-393X
    ISSN 2076-393X
    DOI 10.3390/vaccines10040613
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