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  1. Article ; Online: Prominent transcriptomic changes in Mycobacterium intracellulare under acidic and oxidative stress.

    Park, Hyun-Eui / Kim, Kyu-Min / Shin, Jeong-Ih / Choi, Jeong-Gyu / An, Won-Jun / Trinh, Minh Phuong / Kang, Kyeong-Min / Yoo, Jung-Wan / Byun, Jung-Hyun / Jung, Myung Hwan / Lee, Kon-Ho / Kang, Hyung-Lyun / Baik, Seung Cheol / Lee, Woo-Kon / Shin, Min-Kyoung

    BMC genomics

    2024  Volume 25, Issue 1, Page(s) 376

    Abstract: Background: Mycobacterium avium complex (MAC), including Mycobacterium intracellulare is a member of slow-growing mycobacteria and contributes to a substantial proportion of nontuberculous mycobacterial lung disease in humans affecting immunocompromised ...

    Abstract Background: Mycobacterium avium complex (MAC), including Mycobacterium intracellulare is a member of slow-growing mycobacteria and contributes to a substantial proportion of nontuberculous mycobacterial lung disease in humans affecting immunocompromised and elderly populations. Adaptation of pathogens in hostile environments is crucial in establishing infection and persistence within the host. However, the sophisticated cellular and molecular mechanisms of stress response in M. intracellulare still need to be fully explored. We aimed to elucidate the transcriptional response of M. intracellulare under acidic and oxidative stress conditions.
    Results: At the transcriptome level, 80 genes were shown [FC] ≥ 2.0 and p < 0.05 under oxidative stress with 10 mM hydrogen peroxide. Specifically, 77 genes were upregulated, while 3 genes were downregulated. In functional analysis, oxidative stress conditions activate DNA replication, nucleotide excision repair, mismatch repair, homologous recombination, and tuberculosis pathways. Additionally, our results demonstrate that DNA replication and repair system genes, such as dnaB, dinG, urvB, uvrD2, and recA, are indispensable for resistance to oxidative stress. On the contrary, 878 genes were shown [FC] ≥ 2.0 and p < 0.05 under acidic stress with pH 4.5. Among these genes, 339 were upregulated, while 539 were downregulated. Functional analysis highlighted nitrogen and sulfur metabolism pathways as the primary responses to acidic stress. Our findings provide evidence of the critical role played by nitrogen and sulfur metabolism genes in the response to acidic stress, including narGHIJ, nirBD, narU, narK3, cysND, cysC, cysH, ferredoxin 1 and 2, and formate dehydrogenase.
    Conclusion: Our results suggest the activation of several pathways potentially critical for the survival of M. intracellulare under a hostile microenvironment within the host. This study indicates the importance of stress responses in M. intracellulare infection and identifies promising therapeutic targets.
    MeSH term(s) Humans ; Aged ; Mycobacterium avium Complex/genetics ; Transcriptome ; Mycobacterium avium-intracellulare Infection/microbiology ; Gene Expression Profiling ; Oxidative Stress ; Nitrogen ; Sulfur
    Chemical Substances Nitrogen (N762921K75) ; Sulfur (70FD1KFU70)
    Language English
    Publishing date 2024-04-17
    Publishing country England
    Document type Journal Article
    ZDB-ID 2041499-7
    ISSN 1471-2164 ; 1471-2164
    ISSN (online) 1471-2164
    ISSN 1471-2164
    DOI 10.1186/s12864-024-10292-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Comparison of the Posterior Vertebral Column Resection With the Expandable Cage Versus the Nonexpandable Cage in Thoracolumbar Angular Kyphosis.

    Lee, Jung-Hee / Oh, Hyun-Seok / Choi, Jeong-Gyu

    Clinical spine surgery

    2017  Volume 30, Issue 4, Page(s) E398–E406

    Abstract: Study design: This was a retrospective study.: Objective: To compare the radiographic and clinical results of anterior support with nonexpandable cage with those of expandable cage.: Summary of background data: The goals of surgical treatment in ... ...

    Abstract Study design: This was a retrospective study.
    Objective: To compare the radiographic and clinical results of anterior support with nonexpandable cage with those of expandable cage.
    Summary of background data: The goals of surgical treatment in patients with thoracolumbar angular kyphosis are to improve the neurological deficit through neural decompression, to restore the normal alignment by correction of deformity, and to stabilize the spinal column by arthrodesis. Mesh cages have been traditionally used for reconstruction after corpectomy. However, expandable cages are gaining popularity due to some advantages over mesh cages, structural autograft or allograft, and poly-ether-ether-ketone/carbon fiber.
    Materials and methods: We performed a retrospective study in a consecutive series of 42 subjects with a male-to-female ratio of 15:27, a mean age of 65.3±10.9 years, and a mean follow-up period of 36.4±7.1 months, who underwent posterior vertebral column resection at our medical institutions between 2006 and 2011. They consist of 32 patients with posttraumatic kyphosis with a mean kyphotic angle of 33.1 degrees (range, 12.2-58.1 degrees) and 10 patients with tuberculous kyphosis with a mean kyphotic angle of 53.9 degrees (range, 22.6-126.0 degrees). The mean follow-up period was 36.4 months (range, 28-54 mo). We compared the clinical outcomes between the 2 groups based on radiographic findings, neurological status, and complications. Intervertebral heights and kyphosis at the level of vertebral column resection were used to measure the radiographic outcomes. Neurological outcome was evaluated using the modified Frankel grading system.
    Results: Postoperatively, the mean kyphosis angle was 3.0±10.8 and 6.7±7.2 degrees (P=0.094). At a final follow-up, these values were 4.7±10.1 and 12.3±18.9 degrees in the corresponding order (P=0.099). There were 19 (80.0%) and 21 (86.4%) patients with solid arthrodesis of grade 1. On modified Frankel grading system, all the patients but one achieved improvement. But there was no significant difference in the grade between the 2 groups (P>0.05). Also in our series, there were 12 patients with cage subsidence and 6 with screw loosening.
    Conclusions: Nonexpandable cage and expandable cage are viable options for anterior support; both cages allow for correction of kyphosis with good fusion rate with similar neurological outcomes. Expandable cage is effective for the anterior support of posterior vertebral column resection.
    MeSH term(s) Aged ; Aged, 80 and over ; Female ; Humans ; Kyphosis/diagnostic imaging ; Kyphosis/pathology ; Kyphosis/surgery ; Lumbar Vertebrae/diagnostic imaging ; Lumbar Vertebrae/pathology ; Lumbar Vertebrae/surgery ; Male ; Postoperative Complications/etiology ; Spinal Fusion/adverse effects ; Thoracic Vertebrae/diagnostic imaging ; Thoracic Vertebrae/pathology ; Thoracic Vertebrae/surgery ; Treatment Outcome
    Language English
    Publishing date 2017-04-24
    Publishing country United States
    Document type Comparative Study ; Journal Article
    ZDB-ID 2849646-2
    ISSN 2380-0194 ; 2380-0186
    ISSN (online) 2380-0194
    ISSN 2380-0186
    DOI 10.1097/BSD.0000000000000236
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Fetuin as a potential serum biomarker to detect subclinical shedder of bovine paratuberculosis

    Park, Hyun-Eui / Park, Jin-Sik / Park, Hong-Tae / Shin, Jeong-Ih / Kim, Kyu-Min / Park, Seo-Rin / Choi, Jeong-Gyu / Jung, Myunghwan / Kang, Hyung-Lyun / Baik, Seung-Chul / Lee, Woo-Kon / Yoo, Han Sang / Shin, Min-Kyoung

    Microbial pathogenesis. 2022 Aug., v. 169

    2022  

    Abstract: Paratuberculosis (PTB) is a chronic contagious granulomatous enteritis of wild and domestic ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). PTB causes considerable economic losses to the dairy industry through decreased milk ... ...

    Abstract Paratuberculosis (PTB) is a chronic contagious granulomatous enteritis of wild and domestic ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). PTB causes considerable economic losses to the dairy industry through decreased milk production and premature culling. PTB-affected cattle undergo a subclinical stage without clinical signs and initiate fecal shedding of MAP into the environment. Current diagnostic tools have low sensitivity for the detection of subclinical PTB infection. Therefore, alternative diagnostic tools are required to improve the diagnostic sensitivity of subclinical PTB infection. In this study, we performed ELISA for three previously identified host biomarkers (fetuin, alpha-1-acid glycoprotein, and apolipoprotein) and analyzed their diagnostic performance with conventional PTB diagnostic methods. We observed that serum fetuin levels were significantly lowered in the subclinical shedder and clinical shedder groups than in the healthy control group, indicating its potential utility as a diagnostic biomarker for bovine PTB. Also, fetuin showed an excellent discriminatory power with an AUC = 0.949, a sensitivity of 92.6%, and a specificity of 94.4% for the detection of subclinical MAP infection. In conclusion, our results demonstrated that fetuin could be used as a diagnostic biomarker for enhancing the diagnostic sensitivity for the detection of subclinical MAP infections that are difficult to detect based on current diagnostic methods.
    Keywords Mycobacterium avium subsp. paratuberculosis ; biomarkers ; blood serum ; cattle ; dairy industry ; diagnostic sensitivity ; enteritis ; fetuins ; glycoproteins ; milk production ; paratuberculosis ; pathogenesis
    Language English
    Dates of publication 2022-08
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 632772-2
    ISSN 1096-1208 ; 0882-4010
    ISSN (online) 1096-1208
    ISSN 0882-4010
    DOI 10.1016/j.micpath.2022.105675
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: A novel repeat sequence-based PCR (rep-PCR) using specific repeat sequences of

    Shin, Jeong-Ih / Ha, Jong-Hun / Kim, Kyu-Min / Choi, Jeong-Gyu / Park, Seo-Rin / Park, Hyun-Eui / Park, Jin-Sik / Byun, Jung-Hyun / Jung, Myunghwan / Baik, Seung-Chul / Lee, Woo-Kon / Kang, Hyung-Lyun / Yoo, Jung-Wan / Shin, Min-Kyoung

    Frontiers in microbiology

    2023  Volume 14, Page(s) 1161194

    Abstract: Repetitive sequence-based PCR (rep-PCR) is a potential epidemiological technique that can provide high-throughput genotype fingerprints of ... ...

    Abstract Repetitive sequence-based PCR (rep-PCR) is a potential epidemiological technique that can provide high-throughput genotype fingerprints of heterogeneous
    Language English
    Publishing date 2023-04-06
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2023.1161194
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Fetuin as a potential serum biomarker to detect subclinical shedder of bovine paratuberculosis.

    Park, Hyun-Eui / Park, Jin-Sik / Park, Hong-Tae / Shin, Jeong-Ih / Kim, Kyu-Min / Park, Seo-Rin / Choi, Jeong-Gyu / Jung, Myunghwan / Kang, Hyung-Lyun / Baik, Seung-Chul / Lee, Woo-Kon / Yoo, Han Sang / Shin, Min-Kyoung

    Microbial pathogenesis

    2022  Volume 169, Page(s) 105675

    Abstract: Paratuberculosis (PTB) is a chronic contagious granulomatous enteritis of wild and domestic ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). PTB causes considerable economic losses to the dairy industry through decreased milk ... ...

    Abstract Paratuberculosis (PTB) is a chronic contagious granulomatous enteritis of wild and domestic ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP). PTB causes considerable economic losses to the dairy industry through decreased milk production and premature culling. PTB-affected cattle undergo a subclinical stage without clinical signs and initiate fecal shedding of MAP into the environment. Current diagnostic tools have low sensitivity for the detection of subclinical PTB infection. Therefore, alternative diagnostic tools are required to improve the diagnostic sensitivity of subclinical PTB infection. In this study, we performed ELISA for three previously identified host biomarkers (fetuin, alpha-1-acid glycoprotein, and apolipoprotein) and analyzed their diagnostic performance with conventional PTB diagnostic methods. We observed that serum fetuin levels were significantly lowered in the subclinical shedder and clinical shedder groups than in the healthy control group, indicating its potential utility as a diagnostic biomarker for bovine PTB. Also, fetuin showed an excellent discriminatory power with an AUC = 0.949, a sensitivity of 92.6%, and a specificity of 94.4% for the detection of subclinical MAP infection. In conclusion, our results demonstrated that fetuin could be used as a diagnostic biomarker for enhancing the diagnostic sensitivity for the detection of subclinical MAP infections that are difficult to detect based on current diagnostic methods.
    MeSH term(s) Animals ; Asymptomatic Infections ; Biomarkers ; Cattle ; Cattle Diseases/diagnosis ; Cattle Diseases/microbiology ; Feces/microbiology ; Fetuins ; Mycobacterium avium subsp. paratuberculosis ; Paratuberculosis/diagnosis ; Paratuberculosis/microbiology ; alpha-Fetoproteins
    Chemical Substances Biomarkers ; Fetuins ; alpha-Fetoproteins
    Language English
    Publishing date 2022-07-09
    Publishing country England
    Document type Journal Article
    ZDB-ID 632772-2
    ISSN 1096-1208 ; 0882-4010
    ISSN (online) 1096-1208
    ISSN 0882-4010
    DOI 10.1016/j.micpath.2022.105675
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Alpha-2-Macroglobulin as a New Promising Biomarker Improving the Diagnostic Sensitivity of Bovine Paratuberculosis.

    Park, Hyun-Eui / Park, Jin-Sik / Park, Hong-Tae / Choi, Jeong-Gyu / Shin, Jeong-Ih / Jung, Myunghwan / Kang, Hyung-Lyun / Baik, Seung-Chul / Lee, Woo-Kon / Kim, Donghyuk / Yoo, Han Sang / Shin, Min-Kyoung

    Frontiers in veterinary science

    2021  Volume 8, Page(s) 637716

    Abstract: Johne's disease (JD) is a chronic granulomatous enteritis of ruminants caused ... ...

    Abstract Johne's disease (JD) is a chronic granulomatous enteritis of ruminants caused by
    Language English
    Publishing date 2021-03-05
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2834243-4
    ISSN 2297-1769
    ISSN 2297-1769
    DOI 10.3389/fvets.2021.637716
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  7. Article: Identification of Nontuberculous Mycobacteria in Patients with Pulmonary Diseases in Gyeongnam, Korea, Using Multiplex PCR and Multigene Sequence-Based Analysis.

    Kim, Min-Jeong / Kim, Kyu-Min / Shin, Jeong-Ih / Ha, Jong-Hun / Lee, Dong-Hae / Choi, Jeong-Gyu / Park, Jin-Sik / Byun, Jung-Hyun / Yoo, Jung-Wan / Eum, Seokyong / Jung, Myunghwan / Baik, Seung Chul / Lee, Woo Kon / Kang, Hyung Lyun / Shin, Min-Kyoung

    The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale

    2021  Volume 2021, Page(s) 8844306

    Abstract: Background: Nontuberculous mycobacteria (NTM) are widely present in environments, such as soil and water, and have recently been recognized as important pathogenic bacteria. The incidence of NTM-related infections is steadily increasing. As the ... ...

    Abstract Background: Nontuberculous mycobacteria (NTM) are widely present in environments, such as soil and water, and have recently been recognized as important pathogenic bacteria. The incidence of NTM-related infections is steadily increasing. As the diagnosis and treatment of NTM infection should be distinguished from tuberculosis, and the treatment should be specific to the species of NTM acquired, accurate species identification is required.
    Methods: In this study, two-step multiplex PCR (mPCR) and multigene sequence-based analysis were used to accurately identify NTM species in 320 clinical isolates from Gyeongsang National University Hospital (GNUH). In particular, major mycobacterial strains with a high isolation frequency as well as coinfections with multiple species were diagnosed through two-step mPCR. Multigene sequencing was performed to accurately identify other NTM species not detected by mPCR. Variable regions of the genes 16S rRNA,
    Results: Two-step mPCR identified 234 (73.1%) cases of
    Conclusions: The results of this study suggest a strategy for rapid detection and accurate identification of species using two-step mPCR and multigene sequence-based analysis. To the best of our knowledge, this study is the first to report the identification of NTM species isolated from patients in Gyeongnam/Korea.
    Language English
    Publishing date 2021-02-22
    Publishing country Egypt
    Document type Journal Article
    ZDB-ID 1057056-1
    ISSN 1712-9532 ; 1180-2332
    ISSN 1712-9532 ; 1180-2332
    DOI 10.1155/2021/8844306
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Increased Risk of Severe Gastric Symptoms by Virulence Factors

    Lee, Dong-Hae / Ha, Jong-Hun / Shin, Jeong-Ih / Kim, Kyu-Min / Choi, Jeong-Gyu / Park, Seorin / Park, Jin-Sik / Seo, Ji-Hyeun / Park, Ji-Shook / Shin, Min-Kyoung / Baik, Seung-Chul / Lee, Woo-Kon / Youn, Hee-Shang / Cho, Myung-Je / Kang, Hyung-Lyun / Jung, Myunghwan

    Journal of microbiology and biotechnology

    2021  Volume 31, Issue 3, Page(s) 368–379

    Abstract: Two virulence factors ... ...

    Abstract Two virulence factors of
    MeSH term(s) Adhesins, Bacterial/genetics ; Adult ; Animals ; Bacterial Outer Membrane Proteins/genetics ; Bacterial Proteins/genetics ; Cell Line ; DNA, Bacterial/genetics ; Endonucleases/genetics ; Female ; Gastritis/microbiology ; Helicobacter Infections/microbiology ; Helicobacter Infections/pathology ; Helicobacter pylori/genetics ; Helicobacter pylori/pathogenicity ; Humans ; Male ; Middle Aged ; Peptic Ulcer/microbiology ; Rabbits ; Republic of Korea ; Stomach Diseases/microbiology ; Stomach Neoplasms/microbiology ; Virulence Factors/genetics
    Chemical Substances Adhesins, Bacterial ; AlpA protein, Helicobacter pylori ; BabA protein, Helicobacter pylori ; Bacterial Outer Membrane Proteins ; Bacterial Proteins ; DNA, Bacterial ; HopZ protein, Helicobacter pylori ; VacA protein, Helicobacter pylori ; Virulence Factors ; Endonucleases (EC 3.1.-)
    Language English
    Publishing date 2021-02-23
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2412195-2
    ISSN 1738-8872 ; 1017-7825
    ISSN (online) 1738-8872
    ISSN 1017-7825
    DOI 10.4014/jmb.2101.01023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Comparative Evaluation of Band-Based Genotyping Methods for

    Shin, Jeong-Ih / Ha, Jong-Hun / Lee, Dong-Hae / Choi, Jeong-Gyu / Kim, Kyu-Min / Lee, Seung Jun / Jeong, Yi Yeong / Lee, Jong Deog / Jung, Myunghwan / Baik, Seung-Chul / Lee, Woo Kon / Kang, Hyung-Lyun / Shin, Min-Kyoung / Yoo, Jung-Wan

    Microorganisms

    2020  Volume 8, Issue 9

    Abstract: Mycobacterium ... ...

    Abstract Mycobacterium intracellulare
    Language English
    Publishing date 2020-08-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8091315
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  10. Article: Comparative Evaluation of Band-Based Genotyping Methods for Mycobacterium intracellulare and Its Application for Epidemiological Analysis

    Shin, Jeong-Ih / Ha, Jong-Hun / Lee, Dong-Hae / Choi, Jeong-Gyu / Kim, Kyu-Min / Lee, Seung Jun / Jeong, Yi Yeong / Lee, Jong Deog / Jung, Myunghwan / Baik, Seung-Chul / Lee, Woo Kon / Kang, Hyung-Lyun / Shin, Min-Kyoung / Yoo, Jung-Wan

    Microorganisms. 2020 Aug. 28, v. 8, no. 9

    2020  

    Abstract: Mycobacterium intracellulare is a leading cause of nontuberculous mycobacterial pulmonary disease, with a rapidly increasing prevalence worldwide. This bacterium, commonly distributed in soil and water, is known to be transmitted through the environment ... ...

    Abstract Mycobacterium intracellulare is a leading cause of nontuberculous mycobacterial pulmonary disease, with a rapidly increasing prevalence worldwide. This bacterium, commonly distributed in soil and water, is known to be transmitted through the environment rather than between people. Therefore, it is imperative to establish distinguishable genotyping methods to understand the clinical outcome, disease relapses, and epidemiology. Therefore, in this study, representative band-based genotyping methods were performed using M. intracellualre clinical isolates, and their Hunter–Gaston discriminatory index (HGDI) was 0.947, 0.994, and 1 for variable number tandem repetition (VNTR), VNTR-mycobacterial interspersed repetitive units, pulsed field gel electrophoresis, and repetitive sequence based-PCR, respectively. Although VNTR showed relatively low HGDI, co-infection with other M. intracellualre strains could be determined by loci showing allele diversity from 0 to 0.69. Additionally, genetic distance of clinical isolates from Gyeongnam/Korea, and other regions/countries were visualized by minimum spanning tree (MST) using the globally available VNTR profiles. The results of MST revealed that M. intracellulare isolated from patients in Gyeongnam/Korea had specific VNTR genotypes, which may be evidence of the geographic distribution of M. intracellulare specific genotypes. The comparative results of genotyping techniques and geographical characteristics in this study may provide fundamental information for the epidemiology of M. intracellulare.
    Keywords Mycobacterium intracellulare ; allelic variation ; bacteria ; epidemiological studies ; genetic distance ; genotyping ; geographical distribution ; mixed infection ; people ; respiratory tract diseases ; soil ; Korean Peninsula
    Language English
    Dates of publication 2020-0828
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8091315
    Database NAL-Catalogue (AGRICOLA)

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