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  1. AU="Cholak, Spencer"
  2. AU="Tanowitz, Herbert B."
  3. AU="Gao, Jia-Pei"
  4. AU="Alvarez-Lerma, Francisco"
  5. AU="Junno, Juho-Antti"
  6. AU="Livermore, Polly"
  7. AU="Pervin, Irin"
  8. AU=Upadhyay Avnish K AU=Upadhyay Avnish K
  9. AU="Yabu, Hiroshi"
  10. AU="Soares, Mario J."
  11. AU="Haeusler, Gabrielle M"
  12. AU="Wang, Weiqing"
  13. AU="Fehr, Fabio"
  14. AU="Sasirekha, R" AU="Sasirekha, R"
  15. AU="Rajendraprasad, Girish"
  16. AU="Golbek, Thaddeus W"
  17. AU="Pranav Keshan"

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  1. Artikel ; Online: Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein.

    Saville, James W / Mannar, Dhiraj / Zhu, Xing / Berezuk, Alison M / Cholak, Spencer / Tuttle, Katharine S / Vahdatihassani, Faezeh / Subramaniam, Sriram

    Cell reports

    2023  Band 42, Heft 1, Seite(n) 111964

    Abstract: The BA.2 sub-lineage of the Omicron (B.1.1.529) severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant rapidly supplanted the original BA.1 sub-lineage in early 2022. Both lineages threatened the efficacy of vaccine-elicited antibodies and ... ...

    Abstract The BA.2 sub-lineage of the Omicron (B.1.1.529) severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant rapidly supplanted the original BA.1 sub-lineage in early 2022. Both lineages threatened the efficacy of vaccine-elicited antibodies and acquired increased binding to several mammalian ACE2 receptors. Cryoelectron microscopy (cryo-EM) analysis of the BA.2 spike (S) glycoprotein in complex with mouse ACE2 (mACE2) identifies BA.1- and BA.2-mutated residues Q493R, N501Y, and Y505H as complementing non-conserved residues between human and mouse ACE2, rationalizing the enhanced S protein-mACE2 interaction for Omicron variants. Cryo-EM structures of the BA.2 S-human ACE2 complex and of the extensively mutated BA.2 amino-terminal domain (NTD) reveal a dramatic reorganization of the highly antigenic N1 loop into a β-strand, providing an explanation for decreased binding of the BA.2 S protein to antibodies isolated from BA.1-convalescent patients. Our analysis reveals structural mechanisms underlying the antigenic drift in the rapidly evolving Omicron variant landscape.
    Mesh-Begriff(e) Humans ; Animals ; Mice ; Antigenic Drift and Shift ; Angiotensin-Converting Enzyme 2 ; COVID-19 ; Cryoelectron Microscopy ; SARS-CoV-2/genetics ; Spike Glycoprotein, Coronavirus/genetics ; Antibodies, Viral ; Antibodies, Neutralizing ; Mammals
    Chemische Substanzen spike protein, SARS-CoV-2 ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23) ; Spike Glycoprotein, Coronavirus ; Antibodies, Viral ; Antibodies, Neutralizing
    Sprache Englisch
    Erscheinungsdatum 2023-01-04
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2022.111964
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel ; Online: Altered receptor binding, antibody evasion and retention of T cell recognition by the SARS-CoV-2 XBB.1.5 spike protein.

    Mannar, Dhiraj / Saville, James W / Poloni, Chad / Zhu, Xing / Bezeruk, Alison / Tidey, Keith / Ahmed, Sana / Tuttle, Katharine S / Vahdatihassani, Faezeh / Cholak, Spencer / Cook, Laura / Steiner, Theodore S / Subramaniam, Sriram

    Nature communications

    2024  Band 15, Heft 1, Seite(n) 1854

    Abstract: The XBB.1.5 variant of SARS-CoV-2 has rapidly achieved global dominance and exhibits a high growth advantage over previous variants. Preliminary reports suggest that the success of XBB.1.5 stems from mutations within its spike glycoprotein, causing ... ...

    Abstract The XBB.1.5 variant of SARS-CoV-2 has rapidly achieved global dominance and exhibits a high growth advantage over previous variants. Preliminary reports suggest that the success of XBB.1.5 stems from mutations within its spike glycoprotein, causing immune evasion and enhanced receptor binding. We present receptor binding studies that demonstrate retention of binding contacts with the human ACE2 receptor and a striking decrease in binding to mouse ACE2 due to the revertant R493Q mutation. Despite extensive evasion of antibody binding, we highlight a region on the XBB.1.5 spike protein receptor binding domain (RBD) that is recognized by serum antibodies from a donor with hybrid immunity, collected prior to the emergence of the XBB.1.5 variant. T cell assays reveal high frequencies of XBB.1.5 spike-specific CD4
    Mesh-Begriff(e) Humans ; Animals ; Mice ; SARS-CoV-2/genetics ; CD8-Positive T-Lymphocytes ; Angiotensin-Converting Enzyme 2 ; Spike Glycoprotein, Coronavirus/genetics ; COVID-19 ; Antibodies
    Chemische Substanzen spike protein, SARS-CoV-2 ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23) ; Spike Glycoprotein, Coronavirus ; Antibodies
    Sprache Englisch
    Erscheinungsdatum 2024-02-29
    Erscheinungsland England
    Dokumenttyp Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-024-46104-2
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Allosteric modulation of ryanodine receptor RyR1 by nucleotide derivatives.

    Cholak, Spencer / Saville, James W / Zhu, Xing / Berezuk, Alison M / Tuttle, Katharine S / Haji-Ghassemi, Omid / Alvarado, Francisco J / Van Petegem, Filip / Subramaniam, Sriram

    Structure (London, England : 1993)

    2023  Band 31, Heft 7, Seite(n) 790–800.e4

    Abstract: The coordinated release of ... ...

    Abstract The coordinated release of Ca
    Mesh-Begriff(e) Adenine/metabolism ; Adenosine/metabolism ; Adenosine Monophosphate/metabolism ; Adenosine Triphosphate/metabolism ; Calcium/metabolism ; Muscle, Skeletal/metabolism ; Nucleotides/metabolism ; Ryanodine Receptor Calcium Release Channel/chemistry ; Humans ; Animals ; Rabbits
    Chemische Substanzen Adenine (JAC85A2161) ; Adenosine (K72T3FS567) ; Adenosine Monophosphate (415SHH325A) ; Adenosine Triphosphate (8L70Q75FXE) ; Calcium (SY7Q814VUP) ; Nucleotides ; Ryanodine Receptor Calcium Release Channel
    Sprache Englisch
    Erscheinungsdatum 2023-05-15
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 1213087-4
    ISSN 1878-4186 ; 0969-2126
    ISSN (online) 1878-4186
    ISSN 0969-2126
    DOI 10.1016/j.str.2023.04.009
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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