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  1. Article: The Chikungunya Epidemic: A look at five cases.

    Shiferaw, Bethel / Lam, Paul / Tuthill, Summer / Choudhry, Hira / Syed, Sarah / Ahmed, Shadab / Yasmin, Tabassum

    IDCases

    2015  Volume 2, Issue 4, Page(s) 89–91

    Abstract: Chikungunya is an infection caused by the Chikungunya virus and transmitted by the bite of infected mosquito. The most common symptoms of Chikungunya virus infection are fever, joint pain or rash. Chikungunya virus outbreaks had been identified in ... ...

    Abstract Chikungunya is an infection caused by the Chikungunya virus and transmitted by the bite of infected mosquito. The most common symptoms of Chikungunya virus infection are fever, joint pain or rash. Chikungunya virus outbreaks had been identified in countries in Africa, Asia, Europe, and the Indian and Pacific Oceans. In late 2013, the first local transmission of Chikungunya virus in the Americas was identified in Caribbean countries and territories. Chikungunya virus disease became a nationally notifiable condition in 2015. There is a threat that Chikungunya will continue to spread to new areas in the Americas. We describe 5 patients who presented to our hospital with Chikungunya infection, shortly after returning from endemic areas. Fever and travel history to endemic areas were documented in all of our cases. Skin rash, arthralgia and contact history were also reported by these patients. Persons with suspected Chikungunya infection should be counseled to avoid mosquito bites during illness to decrease the risk of local transmission. The transmitting mosquitos are present in the US, and limiting the viral spread is essential. In this report, we describe the clinical presentation, risk factors and laboratory tests of each patient, and attempt to ensure awareness on the risk of potential spread of the disease.
    Language English
    Publishing date 2015-09-05
    Publishing country Netherlands
    Document type Journal Article ; Case Reports
    ZDB-ID 2745454-X
    ISSN 2214-2509
    ISSN 2214-2509
    DOI 10.1016/j.idcr.2015.08.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: A global metagenomic map of urban microbiomes and antimicrobial resistance

    Danko, David / Bezdan, Daniela / Afshin, Evan E / Ahsanuddin, Sofia / Bhattacharya, Chandrima / Butler, Daniel J / Chng, Kern Rei / Donnellan, Daisy / Hecht, Jochen / Jackson, Katelyn / Kuchin, Katerina / Karasikov, Mikhail / Lyons, Abigail / Mak, Lauren / Meleshko, Dmitry / Mustafa, Harun / Mutai, Beth / Neches, Russell Y / Ng, Amanda /
    Nikolayeva, Olga / Nikolayeva, Tatyana / Png, Eileen / Ryon, Krista A / Sanchez, Jorge L / Shaaban, Heba / Sierra, Maria A / Thomas, Dominique / Young, Ben / Abudayyeh, Omar O / Alicea, Josue / Bhattacharyya, Malay / Blekhman, Ran / Castro-Nallar, Eduardo / Cañas, Ana M / Chatziefthimiou, Aspassia D / Crawford, Robert W / De Filippis, Francesca / Deng, Youping / Desnues, Christelle / Dias-Neto, Emmanuel / Dybwad, Marius / Elhaik, Eran / Ercolini, Danilo / Frolova, Alina / Gankin, Dennis / Gootenberg, Jonathan S / Graf, Alexandra B / Green, David C / Hajirasouliha, Iman / Hastings, Jaden J.A / Hernandez, Mark / Iraola, Gregorio / Jang, Soojin / Kahles, Andre / Kelly, Frank J / Knights, Kaymisha / Kyrpides, Nikos C / Łabaj, Paweł P / Lee, Patrick K.H / Leung, Marcus H.Y / Ljungdahl, Per O / Mason-Buck, Gabriella / McGrath, Ken / Meydan, Cem / Mongodin, Emmanuel F / Moraes, Milton Ozorio / Nagarajan, Niranjan / Nieto-Caballero, Marina / Noushmehr, Houtan / Oliveira, Manuela / Ossowski, Stephan / Osuolale, Olayinka O / Özcan, Orhan / Paez-Espino, David / Rascovan, Nicolás / Richard, Hugues / Rätsch, Gunnar / Schriml, Lynn M / Semmler, Torsten / Sezerman, Osman U / Shi, Leming / Shi, Tieliu / Siam, Rania / Song, Le Huu / Suzuki, Haruo / Court, Denise Syndercombe / Tighe, Scott W / Tong, Xinzhao / Udekwu, Klas I / Ugalde, Juan A / Valentine, Brandon / Vassilev, Dimitar I / Vayndorf, Elena M / Velavan, Thirumalaisamy P / Wu, Jun / Zambrano, María M / Zhu, Jifeng / Zhu, Sibo / Mason, Christopher E / Abdullah, Natasha / Abraao, Marcos / Adel, Ait-hamlat / Afaq, Muhammad / Al-Quaddoomi, Faisal S / Alam, Ireen / Albuquerque, Gabriela E / Alexiev, Alex / Ali, Kalyn / Alvarado-Arnez, Lucia E / Aly, Sarh / Amachee, Jennifer / Amorim, Maria G / Ampadu, Majelia / Amran, Muhammad Al-Fath / An, Nala / Andrew, Watson / Andrianjakarivony, Harilanto / Angelov, Michael / Antelo, Verónica / Aquino, Catharine / Aranguren, Álvaro / Araujo, Luiza F / Vasquez Arevalo, Hitler Francois / Arevalo, Jenny / Arnan, Carme / Alvarado Arnez, Lucia Elena / Arredondo, Fernanda / Arthur, Matthew / Asenjo, Freddy / Aung, Thomas Saw / Auvinet, Juliette / Aventin, Nuria / Ayaz, Sadaf / Baburyan, Silva / Bakere, Abd-Manaaf / Bakhl, Katrin / Bartelli, Thais F / Batdelger, Erdenetsetseg / Baudon, François / Becher, Kevin / Bello, Carla / Benchouaia, Médine / Benisty, Hannah / Benoiston, Anne-Sophie / Benson, Joseph / Benítez, Diego / Bernardes, Juliana / Bertrand, Denis / Beurmann, Silvia / Bitard-Feildel, Tristan / Bittner, Lucie / Black, Christina / Blanc, Guillaume / Blyther, Brittany / Bode, Toni / Boeri, Julia / Boldgiv, Bazartseren / Bolzli, Kevin / Bordigoni, Alexia / Borrelli, Ciro / Bouchard, Sonia / Bouly, Jean-Pierre / Boyd, Alicia / Branco, Gabriela P / Breschi, Alessandra / Brindefalk, Björn / Brion, Christian / Briones, Alan / Buczansla, Paulina / Burke, Catherine M / Burrell, Aszia / Butova, Alina / Buttar, Irvind / Bynoe, Jalia / Bönigk, Sven / Bøifot, Kari O / Caballero, Hiram / Cai, Xiao Wen / Calderon, Dayana / Cantillo, Angela / Carbajo, Miguel / Carbone, Alessandra / Cardenas, Anais / Carrillo, Katerine / Casalot, Laurie / Castro, Sofia / Castro, Ana V / Castro, Astred / Castro, Ana Valeria B / Cawthorne, Simone / Cedillo, Jonathan / Chaker, Salama / Chalangal, Jasna / Chan, Allison / Chasapi, Anastasia I / Chatziefthimiou, Starr / Chaudhuri, Sreya Ray / Chavan, Akash Keluth / Chavez, Francisco / Chem, Gregory / Chen, Xiaoqing / Chen, Michelle / Chen, Jenn-Wei / Chernomoretz, Ariel / Chettouh, Allaeddine / Cheung, Daisy / Chicas, Diana / Chiu, Shirley / Choudhry, Hira / Chrispin, Carl / Ciaramella, Kianna / Cifuentes, Erika / Cohen, Jake / Coil, David A / Collin, Sylvie / Conger, Colleen / Conte, Romain / Corsi, Flavia / Cossio, Cecilia N / Costa, Ana F / Cuebas, Delisia / D’Alessandro, Bruno / Dahlhausen, Katherine E / Darling, Aaron E / Das, Pujita / Davenport, Lucinda B / David, Laurent / Davidson, Natalie R / Dayama, Gargi / Delmas, Stéphane / Deng, Chris K / Dequeker, Chloé / Desert, Alexandre / Devi, Monika / Dezem, Felipe S / Dias, Clara N / Donahoe, Timothy Ryan / Dorado, Sonia / Dorsey, LaShonda / Dotsenko, Valeriia / Du, Steven / Dutan, Alexandra / Eady, Naya / Eisen, Jonathan A / Elaskandrany, Miar / Epping, Lennard / Escalera-Antezana, Juan P / Ettinger, Cassie L / Faiz, Iqra / Fan, Luice / Farhat, Nadine / Faure, Emile / Fauzi, Fazlina / Feigin, Charlie / Felice, Skye / Ferreira, Laís Pereira / Figueroa, Gabriel / Fleiss, Aubin / Flores, Denisse / Velasco Flores, Jhovana L / Fonseca, Marcos A.S / Foox, Jonathan / Forero, Juan Carlos / Francis, Aaishah / French, Kelly / Fresia, Pablo / Friedman, Jacob / Fuentes, Jaime J / Galipon, Josephine / Garcia, Mathilde / Garcia, Laura / García, Catalina / Geiger, Annie / Gerner, Samuel M / Ghose, Sonia L / Giang, Dao Phuong / Giménez, Matías / Giovannelli, Donato / Githae, Dedan / Gkotzis, Spyridon / Godoy, Liliana / Goldman, Samantha / Gonnet, Gaston H / Gonzalez, Juana / Gonzalez, Andrea / Gonzalez-Poblete, Camila / Gray, Andrew / Gregory, Tranette / Greselle, Charlotte / Guasco, Sophie / Guerra, Juan / Gurianova, Nika / Haehr, Wolfgang / Halary, Sebastien / Hartkopf, Felix / Hawkins-Zafarnia, Arya / Hazrin-Chong, Nur Hazlin / Helfrich, Eric / Hell, Eva / Henry, Tamera / Hernandez, Samuel / Hernandez, Pilar Lopez / Hess-Homeier, David / Hittle, Lauren E / Hoan, Nghiem Xuan / Holik, Aliaksei / Homma, Chiaki / Hoxie, Irene / Huber, Michael / Humphries, Elizabeth / Hyland, Stephanie / Hässig, Andrea / Häusler, Roland / Hüsser, Nathalie / Petit, Robert A / Iderzorig, Badamnyambuu / Igarashi, Mizuki / Iqbal, Shaikh B / Ishikawa, Shino / Ishizuka, Sakura / Islam, Sharah / Islam, Riham / Ito, Kohei / Ito, Sota / Ito, Takayuki / Ivankovic, Tomislav / Iwashiro, Tomoki / Jackson, Sarah / Jacobs, JoAnn / James, Marisano / Jaubert, Marianne / Jerier, Marie-Laure / Jiminez, Esmeralda / Jinfessa, Ayantu / De Jong, Ymke / Joo, Hyun Woo / Jospin, Guilllaume / Kajita, Takema / Ahmad Kassim, Affifah Saadah / Kato, Nao / Kaur, Amrit / Kaur, Inderjit / de Souza Gomes Kehdy, Fernanda / Khadka, Vedbar S / Khan, Shaira / Khavari, Mahshid / Ki, Michelle / Kim, Gina / Kim, Hyung Jun / Kim, Sangwan / King, Ryan J / KoLoMonaco, Giuseppe / Koag, Ellen / Kobko-Litskevitch, Nadezhda / Korshevniuk, Maryna / Kozhar, Michael / Krebs, Jonas / Kubota, Nanami / Kuklin, Andrii / Kumar, Sheelta S / Kwong, Rachel / Kwong, Lawrence / Lafontaine, Ingrid / Lago, Juliana / Lai, Tsoi Ying / Laine, Elodie / Laiola, Manolo / Lakhneko, Olha / Lamba, Isha / de Lamotte, Gerardo / Lannes, Romain / De Lazzari, Eleonora / Leahy, Madeline / Lee, Hyunjung / Lee, Yunmi / Lee, Lucy / Lemaire, Vincent / Leong, Emily / Lewandowska, Dagmara / Li, Chenhao / Liang, Weijun / Lin, Moses / Lisboa, Priscilla / Litskevitch, Anna / Liu, Eric Minwei / Liu, Tracy / Livia, Mayra Arauco / Lo, Yui Him / Losim, Sonia / Loubens, Manon / Lu, Jennifer / Lykhenko, Olexandr / Lysakova, Simona / Mahmoud, Salah / Majid, Sara Abdul / Makogon, Natalka / Maldonado, Denisse / Mallari, Krizzy / Malta, Tathiane M / Mamun, Maliha / Manoir, Dimitri / Marchandon, German / Marciniak, Natalia / Marinovic, Sonia / Marques, Brunna / Mathews, Nicole / Matsuzaki, Yuri / Matthys, Vincent / May, Madelyn / McComb, Elias / Meagher, Annabelle / Melamed, Adiell / Menary, Wayne / Mendez, Katterinne N / Mendez, Ambar / Mendy, Irène Mauricette / Meng, Irene / Menon, Ajay / Menor, Mark / Meoded, Roy / Merino, Nancy / Miah, Karishma / Mignotte, Mathilde / Miketic, Tanja / Miranda, Wilson / Mitsios, Athena / Miura, Ryusei / Miyake, Kunihiko / Moccia, Maria D / Mohan, Natasha / Mohsin, Mohammed / Moitra, Karobi / Moldes, Mauricio / Molina, Laura / Molinet, Jennifer / Molomjamts, Orgil-Erdene / Moniruzzaman, Eftar / Moon, Sookwon / de Oliveira Moraes, Isabelle / Moreno, Mario / Mosella, Maritza S / Moser, Josef W / Mozsary, Christopher / Muehlbauer, Amanda L / Muner, Oasima / Munia, Muntaha / Munim, Naimah / Muscat, Maureen / Mustac, Tatjana / Muñoz, Cristina / Nadalin, Francesca / Naeem, Areeg / Nagy-Szakal, Dorottya / Nakagawa, Mayuko / Narce, Ashanti / Nasu, Masaki / Navarrete, Irene González / Naveed, Hiba / Nazario, Bryan / Nedunuri, Narasimha Rao / Neff, Thomas / Nesimi, Aida / Ng, Wan Chiew / Ng, Synti / Nguyen, Gloria / Ngwa, Elsy / Nicolas, Agier / Nicolas, Pierre / Nika, Abdollahi / Noorzi, Hosna / Nosrati, Avigdor / Nunes, Diana N / O’Brien, Kathryn / O’Hara, Niamh B / Oken, Gabriella / Olawoyin, Rantimi A / Oliete, Javier Quilez / Olmeda, Kiara / Oluwadare, Tolulope / Oluwadare, Itunu A / Ordioni, Nils / Orpilla, Jenessa / Orrego, Jacqueline / Ortega, Melissa / Osma, Princess / Osuolale, Israel O / Osuolale, Oluwatosin M / Ota, Mitsuki / Oteri, Francesco / Oto, Yuya / Ounit, Rachid / Ouzounis, Christos A / Pakrashi, Subhamitra / Paras, Rachel / Pardo-Este, Coral / Park, Young-Ja / Pastuszek, Paulina / Patel, Suraj / Pathmanathan, Jananan / Patrignani, Andrea / Perez, Manuel / Peros, Ante / Persaud, Sabrina / Peters, Anisia / Phillips, Adam / Pineda, Lisbeth / Pizzi, Melissa P / Plaku, Alma / Plaku, Alketa / Pompa-Hogan, Brianna / Portilla, María Gabriela / Posada, Leonardo / Priestman, Max / Prithiviraj, Bharath / Priya, Sambhawa / Pugdeethosal, Phanthira / Pugh, Catherine E / Pulatov, Benjamin / Pupiec, Angelika / Pyrshev, Kyrylo / Qing, Tao / Rahiel, Saher / Rahmatulloev, Savlatjon / Rajendran, Kannan / Ramcharan, Aneisa / Ramirez-Rojas, Adan / Rana, Shahryar / Ratnanandan, Prashanthi / Read, Timothy D / Rehrauer, Hubert / Richer, Renee / Rivera, Alexis / Rivera, Michelle / Robertiello, Alessandro / Robinson, Courtney / Rodríguez, Paula / Rojas, Nayra Aguilar / Roldán, Paul / Rosario, Anyelic / Roth, Sandra / Ruiz, Maria / Boja Ruiz, Stephen Eduard / Russell, Kaitlan / Rybak, Mariia / Sabedot, Thais S / Sabina, Mahfuza / Saito, Ikuto / Saito, Yoshitaka / Malca Salas, Gustavo Adolfo / Salazar, Cecilia / San, Kaung Myat / Sanchez, Jorge / Sanchir, Khaliun / Sankar, Ryan / de Souza Santos, Paulo Thiago / Saravi, Zulena / Sasaki, Kai / Sato, Yuma / Sato, Masaki / Sato, Seisuke / Sato, Ryo / Sato, Kaisei / Sayara, Nowshin / Schaaf, Steffen / Schacher, Oli / Schinke, Anna-Lena M / Schlapbach, Ralph / Schori, Christian / Schriml, Jason R / Segato, Felipe / Sepulveda, Felipe / Serpa, Marianna S / De Sessions, Paola F / Severyn, Juan C / Shakil, Maheen / Shalaby, Sarah / Shari, Aliyah / Shim, Hyenah / Shirahata, Hikaru / Shiwa, Yuh / Da Silva, Ophélie / Silva, Jordana M / Simon, Gwenola / Singh, Shaleni K / Sluzek, Kasia / Smith, Rebecca / So, Eunice / Andreu Somavilla, Núria / Sonohara, Yuya / Rufino de Sousa, Nuno / Souza, Camila / Sperry, Jason / Sprinsky, Nicolas / Stark, Stefan G / La Storia, Antonietta / Suganuma, Kiyoshi / Suliman, Hamood / Sullivan, Jill / Supie, Arif Asyraf Md / Suzuki, Chisato / Takagi, Sora / Takahara, Fumie / Takahashi, Naoya / Takahashi, Kou / Takeda, Tomoki / Takenaka, Isabella K / Tanaka, Soma / Tang, Anyi / Man Tang, Yuk / Tarcitano, Emilio / Tassinari, Andrea / Taye, Mahdi / Terrero, Alexis / Thambiraja, Eunice / Thiébaut, Antonin / Thomas, Sade / Thomas, Andrew M / Togashi, Yuto / Togashi, Takumi / Tomaselli, Anna / Tomita, Masaru / Tomita, Itsuki / Toth, Oliver / Toussaint, Nora C / Tran, Jennifer M / Truong, Catalina / Tsonev, Stefan I / Tsuda, Kazutoshi / Tsurumaki, Takafumi / Tuz, Michelle / Tymoshenko, Yelyzaveta / Urgiles, Carmen / Usui, Mariko / Vacant, Sophie / Vann, Laura E / Velter, Fabienne / Ventorino, Valeria / Vera-Wolf, Patricia / Vicedomini, Riccardo / Suarez-Villamil, Michael A / Vincent, Sierra / Vivancos-Koopman, Renee / Wan, Andrew / Wang, Cindy / Warashina, Tomoro / Watanabe, Ayuki / Weekes, Samuel / Werner, Johannes / Westfall, David / Wieler, Lothar H / Williams, Michelle / Wolf, Silver A / Wong, Brian / Wong, Yan Ling / Wong, Tyler / Wright, Rasheena / Wunderlin, Tina / Yamanaka, Ryota / Yang, Jingcheng / Yano, Hirokazu / Yeh, George C / Yemets, Olena / Yeskova, Tetiana / Yoshikawa, Shusei / Zafar, Laraib / Zhang, Yang / Zhang, Shu / Zhang, Amy / Zheng, Yuanting / Zubenko, Stas

    Cell. 2021 June 24, v. 184, no. 13

    2021  

    Abstract: We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of ... ...

    Institution The International MetaSUB Consortium
    Abstract We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.
    Keywords Archaea ; antibiotic resistance ; climate ; forensic sciences ; humans ; metagenomics ; microbial ecology ; microbiome ; public health
    Language English
    Dates of publication 2021-0624
    Size p. 3376-3393.e17.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2021.05.002
    Database NAL-Catalogue (AGRICOLA)

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