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  1. Article ; Online: Managers, modelers, and measuring the impact of species distribution model uncertainty on marine zoning decisions.

    Costa, Bryan / Kendall, Matthew / McKagan, Steven

    PloS one

    2018  Volume 13, Issue 10, Page(s) e0204569

    Abstract: Marine managers routinely use spatial data to make decisions about their marine environment. Uncertainty associated with this spatial data can have profound impacts on these management decisions and their projected outcomes. Recent advances in modeling ... ...

    Abstract Marine managers routinely use spatial data to make decisions about their marine environment. Uncertainty associated with this spatial data can have profound impacts on these management decisions and their projected outcomes. Recent advances in modeling techniques, including species distribution models (SDMs), make it easier to generate continuous maps showing the uncertainty associated with spatial predictions and maps. However, SDM predictions and maps can be complex and nuanced. This complexity makes their use challenging for non-technical managers, preventing them from having the best available information to make decisions. To help bridge these communication and information gaps, we developed maps to illustrate how SDMs and associated uncertainty can be translated into readily usable products for managers. We also explicitly described the potential impacts of uncertainty on marine zoning decisions. This approach was applied to a case study in Saipan Lagoon, Commonwealth of the Northern Mariana Islands (CNMI). Managers in Saipan are interested in minimizing the potential impacts of personal watercraft (e.g., jet skis) on staghorn Acropora (i.e., Acropora aspera, A. formosa, and A. pulchra), which is an important coral assemblage in the lagoon. We used a recently completed SDM for staghorn Acropora to develop maps showing the sensitivity of zoning options to three different prediction and three different uncertainty thresholds (nine combinations total). Our analysis showed that the amount of area and geographic location of predicted staghorn Acropora presence changed based on these nine combinations. These dramatically different spatial patterns would have significant zoning implications when considering where to exclude and/or allow jet skis operations inside the lagoon. They also show that different uncertainty thresholds may lead managers to markedly different conclusions and courses of action. Defining acceptable levels of uncertainty upfront is critical for ensuring that managers can make more informed decisions, meet their marine resource goals and generate favorable outcomes for their stakeholders.
    MeSH term(s) Animal Distribution ; Animals ; Anthozoa ; Conservation of Natural Resources/methods ; Decision Making ; Ecosystem ; Leisure Activities ; Micronesia ; Models, Biological ; Oceans and Seas ; Ships ; Spatial Analysis ; Species Specificity ; Uncertainty
    Language English
    Publishing date 2018-10-10
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0204569
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Mapping Seafloor Relative Reflectance and Assessing Coral Reef Morphology with EAARL-B Topobathymetric Lidar Waveforms

    Wilson, Nicholas / Parrish, Christopher E. / Battista, Tim / Wright, C. Wayne / Costa, Bryan / Slocum, Richard K. / Dijkstra, Jennifer A. / Tyler, Matthew T.

    Estuaries and coasts. 2022 June, v. 45, no. 4

    2022  

    Abstract: Topobathymetric lidar is becoming an increasingly valuable tool for benthic habitat mapping, enabling safe, efficient data acquisition over coral reefs and other fragile ecosystems. In 2014, a novel topobathymetric lidar system, the Experimental Advanced ...

    Abstract Topobathymetric lidar is becoming an increasingly valuable tool for benthic habitat mapping, enabling safe, efficient data acquisition over coral reefs and other fragile ecosystems. In 2014, a novel topobathymetric lidar system, the Experimental Advanced Airborne Research Lidar-B (EAARL-B), was used to acquire data in priority habitat areas in the U.S. Virgin Islands (USVI), spanning the 0–44-m depth range. In this study, new algorithms and procedures were developed for generating seafloor relative reflectance, along with a suite of shape-based waveform features from EAARL-B. Waveform features were then correlated with percent cover of coral morphologies, domed and branched, and total cover of hard and soft corals. Results show that the EAARL-B can be used to produce useful seafloor relative reflectance mosaics and also that the additional waveform shape-based features contain additional information that may benefit habitat classification—specifically, to aid in distinguishing among hard corals and their coral morphologies, domed and branched. Knowing the spatial extent of changes in coral communities is important to the understanding of resiliency of coral reefs under stress from human impacts.
    Keywords benthic ecosystems ; coral reefs ; corals ; data collection ; humans ; lidar ; reflectance
    Language English
    Dates of publication 2022-06
    Size p. 923-937.
    Publishing place Springer US
    Document type Article
    ZDB-ID 2229170-2
    ISSN 1559-2731 ; 1559-2723
    ISSN (online) 1559-2731
    ISSN 1559-2723
    DOI 10.1007/s12237-019-00652-9
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Mapping reef fish and the seascape: using acoustics and spatial modeling to guide coastal management.

    Costa, Bryan / Taylor, J Christopher / Kracker, Laura / Battista, Tim / Pittman, Simon

    PloS one

    2014  Volume 9, Issue 1, Page(s) e85555

    Abstract: Reef fish distributions are patchy in time and space with some coral reef habitats supporting higher densities (i.e., aggregations) of fish than others. Identifying and quantifying fish aggregations (particularly during spawning events) are often top ... ...

    Abstract Reef fish distributions are patchy in time and space with some coral reef habitats supporting higher densities (i.e., aggregations) of fish than others. Identifying and quantifying fish aggregations (particularly during spawning events) are often top priorities for coastal managers. However, the rapid mapping of these aggregations using conventional survey methods (e.g., non-technical SCUBA diving and remotely operated cameras) are limited by depth, visibility and time. Acoustic sensors (i.e., splitbeam and multibeam echosounders) are not constrained by these same limitations, and were used to concurrently map and quantify the location, density and size of reef fish along with seafloor structure in two, separate locations in the U.S. Virgin Islands. Reef fish aggregations were documented along the shelf edge, an ecologically important ecotone in the region. Fish were grouped into three classes according to body size, and relationships with the benthic seascape were modeled in one area using Boosted Regression Trees. These models were validated in a second area to test their predictive performance in locations where fish have not been mapped. Models predicting the density of large fish (≥ 29 cm) performed well (i.e., AUC = 0.77). Water depth and standard deviation of depth were the most influential predictors at two spatial scales (100 and 300 m). Models of small (≤ 11 cm) and medium (12-28 cm) fish performed poorly (i.e., AUC = 0.49 to 0.68) due to the high prevalence (45-79%) of smaller fish in both locations, and the unequal prevalence of smaller fish in the training and validation areas. Integrating acoustic sensors with spatial modeling offers a new and reliable approach to rapidly identify fish aggregations and to predict the density large fish in un-surveyed locations. This integrative approach will help coastal managers to prioritize sites, and focus their limited resources on areas that may be of higher conservation value.
    MeSH term(s) Acoustics ; Animals ; Biodiversity ; Coral Reefs ; Fishes ; Models, Theoretical
    Language English
    Publishing date 2014-01-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0085555
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Seascape models reveal places to focus coastal fisheries management.

    Stamoulis, Kostantinos A / Delevaux, Jade M S / Williams, Ivor D / Poti, Matthew / Lecky, Joey / Costa, Bryan / Kendall, Matthew S / Pittman, Simon J / Donovan, Mary K / Wedding, Lisa M / Friedlander, Alan M

    Ecological applications : a publication of the Ecological Society of America

    2018  Volume 28, Issue 4, Page(s) 910–925

    Abstract: To design effective marine reserves and support fisheries, more information on fishing patterns and impacts for targeted species is needed, as well as better understanding of their key habitats. However, fishing impacts vary geographically and are ... ...

    Abstract To design effective marine reserves and support fisheries, more information on fishing patterns and impacts for targeted species is needed, as well as better understanding of their key habitats. However, fishing impacts vary geographically and are difficult to disentangle from other factors that influence targeted fish distributions. We developed a set of fishing effort and habitat layers at high resolution and employed machine learning techniques to create regional-scale seascape models and predictive maps of biomass and body length of targeted reef fishes for the main Hawaiian Islands. Spatial patterns of fishing effort were shown to be highly variable and seascape models indicated a low threshold beyond which targeted fish assemblages were severely impacted. Topographic complexity, exposure, depth, and wave power were identified as key habitat variables that influenced targeted fish distributions and defined productive habitats for reef fisheries. High targeted reef fish biomass and body length were found in areas not easily accessed by humans, while model predictions when fishing effort was set to zero showed these high values to be more widely dispersed among suitable habitats. By comparing current targeted fish distributions with those predicted when fishing effort was removed, areas with high recovery potential on each island were revealed, with average biomass recovery of 517% and mean body length increases of 59% on Oahu, the most heavily fished island. Spatial protection of these areas would aid recovery of nearshore coral reef fisheries.
    MeSH term(s) Animals ; Biomass ; Body Size ; Coral Reefs ; Fisheries ; Fishes ; Hawaii ; Models, Theoretical
    Language English
    Publishing date 2018-05-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1074505-1
    ISSN 1939-5582 ; 1051-0761
    ISSN (online) 1939-5582
    ISSN 1051-0761
    DOI 10.1002/eap.1696
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Identifying Suitable Locations for Mesophotic Hard Corals Offshore of Maui, Hawai'i.

    Costa, Bryan / Kendall, Matthew S / Parrish, Frank A / Rooney, John / Boland, Raymond C / Chow, Malia / Lecky, Joey / Montgomery, Anthony / Spalding, Heather

    PloS one

    2015  Volume 10, Issue 7, Page(s) e0130285

    Abstract: Mesophotic hard corals (MHC) are increasingly threatened by a growing number of anthropogenic stressors, including impacts from fishing, land-based sources of pollution, and ocean acidification. However, little is known about their geographic ... ...

    Abstract Mesophotic hard corals (MHC) are increasingly threatened by a growing number of anthropogenic stressors, including impacts from fishing, land-based sources of pollution, and ocean acidification. However, little is known about their geographic distributions (particularly around the Pacific islands) because it is logistically challenging and expensive to gather data in the 30 to 150 meter depth range where these organisms typically live. The goal of this study was to begin to fill this knowledge gap by modelling and predicting the spatial distribution of three genera of mesophotic hard corals offshore of Maui in the Main Hawaiian Islands. Maximum Entropy modeling software was used to create separate maps of predicted probability of occurrence and uncertainty for: (1) Leptoseris, (2) Montipora, and (3) Porites. Genera prevalence was derived from the in situ presence/absence data, and used to convert relative habitat suitability to probability of occurrence values. Approximately 1,300 georeferenced records of the occurrence of MHC, and 34 environmental predictors were used to train the model ensembles. Receiver Operating Characteristic (ROC) Area Under the Curve (AUC) values were between 0.89 and 0.97, indicating excellent overall model performance. Mean uncertainty and mean absolute error for the spatial predictions ranged from 0.006% to 0.05% and 3.73% to 17.6%, respectively. Depth, distance from shore, euphotic depth (mean and standard deviation) and sea surface temperature (mean and standard deviation) were identified as the six most influential predictor variables for partitioning habitats among the three genera. MHC were concentrated between Hanaka'ō'ō and Papawai Points offshore of western Maui most likely because this area hosts warmer, clearer and calmer water conditions almost year round. While these predictions helped to fill some knowledge gaps offshore of Maui, many information gaps remain in the Hawaiian Archipelago and Pacific Islands. This approach may be used to identify other potentially suitable areas for MHCs, helping scientists and resource managers prioritize sites, and focus their limited resources on areas that may be of higher scientific or conservation value.
    MeSH term(s) Animals ; Anthozoa/physiology ; Biodiversity ; Ecology ; Ecosystem ; Geography ; Hawaii ; Models, Theoretical ; Oceans and Seas ; Pacific Islands ; ROC Curve ; Reproducibility of Results ; Software ; Species Specificity ; Temperature
    Language English
    Publishing date 2015
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0130285
    Database MEDical Literature Analysis and Retrieval System OnLINE

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