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  1. Article ; Online: Yellow fever in Asia-a risk analysis.

    Cracknell Daniels, Bethan / Gaythorpe, Katy / Imai, Natsuko / Dorigatti, Ilaria

    Journal of travel medicine

    2021  Volume 28, Issue 3

    Abstract: Background: There is concern about the risk of yellow fever (YF) establishment in Asia, owing to rising numbers of urban outbreaks in endemic countries and globalisation. Following an outbreak in Angola in 2016, YF cases were introduced into China. ... ...

    Abstract Background: There is concern about the risk of yellow fever (YF) establishment in Asia, owing to rising numbers of urban outbreaks in endemic countries and globalisation. Following an outbreak in Angola in 2016, YF cases were introduced into China. Prior to this, YF had never been recorded in Asia, despite climatic suitability and the presence of mosquitoes. An outbreak in Asia could result in widespread fatalities and huge economic impact. Therefore, quantifying the potential risk of YF outbreaks in Asia is a public health priority.
    Methods: Using international flight data and YF incidence estimates from 2016, we quantified the risk of YF introduction via air travel into Asia. In locations with evidence of a competent mosquito population, the potential for autochthonous YF transmission was estimated using a temperature-dependent model of the reproduction number and a branching process model assuming a negative binomial distribution.
    Results: In total, 25 cities across Asia were estimated to be at risk of receiving at least one YF viraemic traveller during 2016. At their average temperatures, we estimated the probability of autochthonous transmission to be <50% in all cities, which was primarily due to the limited number of estimated introductions that year.
    Conclusion: Despite the rise in air travel, we found low support for travel patterns between YF endemic countries and Asia resulting in autochthonous transmission during 2016. This supports the historic absence of YF in Asia and suggests it could be due to a limited number of introductions in previous years. Future increases in travel volumes or YF incidence can increase the number of introductions and the risk of autochthonous transmission. Given the high proportion of asymptomatic or mild infections and the challenges of YF surveillance, our model can be used to estimate the introduction and outbreak risk and can provide useful information to surveillance systems.
    MeSH term(s) Aedes ; Angola/epidemiology ; Animals ; Asia ; Cities ; Disease Outbreaks/prevention & control ; Female ; Humans ; Risk Assessment ; Travel-Related Illness ; Yellow Fever/epidemiology ; Yellow Fever/prevention & control ; Yellow Fever/transmission ; Yellow fever virus/physiology
    Language English
    Publishing date 2021-02-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 1212504-0
    ISSN 1708-8305 ; 1195-1982
    ISSN (online) 1708-8305
    ISSN 1195-1982
    DOI 10.1093/jtm/taab015
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Impact of antigen test target failure and testing strategies on the transmission of SARS-CoV-2 variants.

    Del Vecchio, Claudia / Cracknell Daniels, Bethan / Brancaccio, Giuseppina / Brazzale, Alessandra Rosalba / Lavezzo, Enrico / Ciavarella, Constanze / Onelia, Francesco / Franchin, Elisa / Manuto, Laura / Bianca, Federico / Cianci, Vito / Cattelan, Anna Maria / Dorigatti, Ilaria / Toppo, Stefano / Crisanti, Andrea

    Nature communications

    2022  Volume 13, Issue 1, Page(s) 5870

    Abstract: Population testing remains central to COVID-19 control and surveillance, with countries increasingly using antigen tests rather than molecular tests. Here we describe a SARS-CoV-2 variant that escapes N antigen tests due to multiple disruptive amino-acid ...

    Abstract Population testing remains central to COVID-19 control and surveillance, with countries increasingly using antigen tests rather than molecular tests. Here we describe a SARS-CoV-2 variant that escapes N antigen tests due to multiple disruptive amino-acid substitutions in the N protein. By fitting a multistrain compartmental model to genomic and epidemiological data, we show that widespread antigen testing in the Italian region of Veneto favored the undetected spread of the antigen-escape variant compared to the rest of Italy. We highlight novel limitations of widespread antigen testing in the absence of molecular testing for diagnostic or confirmatory purposes. Notably, we find that genomic surveillance systems which rely on antigen population testing to identify samples for sequencing will bias detection of escape antigen test variants. Together, these findings highlight the importance of retaining molecular testing for surveillance purposes, including in contexts where the use of antigen tests is widespread.
    MeSH term(s) COVID-19/diagnosis ; COVID-19/epidemiology ; Humans ; Italy/epidemiology ; SARS-CoV-2/genetics
    Language English
    Publishing date 2022-10-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-022-33460-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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