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  1. Book: Handbook of molecular and cellular methods in biology and medicine

    Cseke, Leland J.

    2011  

    Title variant Molecular and cellular methods in biology and medicine
    Author's details ed. by Leland J. Cseke
    Keywords Molecular Biology ; Cytological Techniques
    Language English
    Size XX, 715 S. : Ill., graph. Darst.
    Edition 3. ed.
    Publisher CRC Press
    Publishing place Boca Raton u.a.
    Publishing country United States
    Document type Book
    HBZ-ID HT016752160
    ISBN 978-1-4200-6938-9 ; 1-4200-6938-1
    Database Catalogue ZB MED Medicine, Health

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  2. Book: Natural products from plants

    Cseke, Leland J.

    2006  

    Author's details Leland J. Cseke
    Keywords Pflanzen ; Natürliche Ressourcen ; Pflanzeninhaltsstoff ; Pflanzlicher Rohstoff ; Naturstoff ; Biochemie ; Pflanzliches Produkt
    Subject Nutzpflanzen ; Pflanzenprodukt ; Biologische Chemie ; Flora ; Pflanze ; Landpflanzen ; Natural Product ; Pflanzen ; Pflanzenstoff ; Sekundärer Pflanzenstoff ; Pflanzlicher Inhaltsstoff ; Phytochemikalie ; Pflanzenwirkstoff ; Sekundärer Pflanzeninhaltsstoff ; Naturgüter ; Naturschätze ; Naturressourcen ; Natürliche Ressource
    Language English
    Size 611 S., [2] Bl. : Ill., graph. Darst.
    Edition 2. ed.
    Publisher CRC Press u.a.
    Publishing place Boca Raton
    Publishing country United States
    Document type Book
    HBZ-ID HT014407957
    ISBN 0-8493-2976-0 ; 978-0-8493-2976-0
    Database Catalogue ZB MED Nutrition, Environment, Agriculture

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  3. Article ; Online: A splicing variant of EDS1 from Vitis vinifera forms homodimers but no heterodimers with PAD4.

    Voss, Martin / Cseke, Leland J / Gassmann, Walter / Niefind, Karsten

    Protein science : a publication of the Protein Society

    2023  Volume 32, Issue 4, Page(s) e4624

    Abstract: Enhanced Disease Susceptibility 1 (EDS1), a key component of microbe-triggered immunity and effector-triggered immunity in most higher plants, forms functional heterodimeric complexes with its homologs Phytoalexin Deficient 4 (PAD4) or Senescence- ... ...

    Abstract Enhanced Disease Susceptibility 1 (EDS1), a key component of microbe-triggered immunity and effector-triggered immunity in most higher plants, forms functional heterodimeric complexes with its homologs Phytoalexin Deficient 4 (PAD4) or Senescence-associated Gene 101 (SAG101). Here, the crystal structure of VvEDS1
    MeSH term(s) Arabidopsis Proteins/chemistry ; Vitis/genetics ; Vitis/metabolism ; Phytoalexins ; DNA-Binding Proteins/chemistry ; Arabidopsis/genetics ; Arabidopsis/metabolism ; Carboxylic Ester Hydrolases/chemistry ; Plant Diseases
    Chemical Substances Arabidopsis Proteins ; Phytoalexins ; DNA-Binding Proteins ; Carboxylic Ester Hydrolases (EC 3.1.1.-) ; SAG101 protein, Arabidopsis (EC 3.1.1.-) ; EDS1 protein, Arabidopsis ; PAD4 protein, Arabidopsis (EC 3.1.1.-)
    Language English
    Publishing date 2023-03-14
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1106283-6
    ISSN 1469-896X ; 0961-8368
    ISSN (online) 1469-896X
    ISSN 0961-8368
    DOI 10.1002/pro.4624
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Cell-specific polymerization-driven biomolecular condensate formation fine-tunes root tissue morphogenesis.

    Su, Jianbin / Xu, Xianjin / Cseke, Leland J / Whittier, Sean / Zhou, Ruimei / Zhang, Zhengzhi / Dietz, Zackary / Singh, Kamal / Yang, Bing / Chen, Shi-You / Picking, William / Zou, Xiaoqin / Gassmann, Walter

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Formation of biomolecular condensates can be driven by weak multivalent interactions and emergent polymerization. However, the mechanism of polymerization-mediated condensate formation is less studied. We found lateral root cap cell (LRC)-specific ... ...

    Abstract Formation of biomolecular condensates can be driven by weak multivalent interactions and emergent polymerization. However, the mechanism of polymerization-mediated condensate formation is less studied. We found lateral root cap cell (LRC)-specific SUPPRESSOR OF RPS4-RLD1 (SRFR1) condensates fine-tune primary root development. Polymerization of the SRFR1 N-terminal domain is required for both LRC condensate formation and optimal root growth. Surprisingly, the first intrinsically disordered region (IDR1) of SRFR1 can be functionally substituted by a specific group of intrinsically disordered proteins known as dehydrins. This finding facilitated the identification of functional segments in the IDR1 of SRFR1, a generalizable strategy to decode unknown IDRs. With this functional information we further improved root growth by modifying the SRFR1 condensation module, providing a strategy to improve plant growth and resilience.
    Language English
    Publishing date 2024-04-03
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.04.02.587845
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Class I TCP transcription factor AtTCP8 modulates key brassinosteroid-responsive genes.

    Spears, Benjamin J / McInturf, Samuel A / Collins, Carina / Chlebowski, Meghann / Cseke, Leland J / Su, Jianbin / Mendoza-Cózatl, David G / Gassmann, Walter

    Plant physiology

    2022  Volume 190, Issue 2, Page(s) 1457–1473

    Abstract: The plant-specific TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) transcription factor family is most closely associated with regulating plant developmental programs. Recently, TCPs were also shown to mediate host immune signaling, both as ... ...

    Abstract The plant-specific TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) transcription factor family is most closely associated with regulating plant developmental programs. Recently, TCPs were also shown to mediate host immune signaling, both as targets of pathogen virulence factors and as regulators of plant defense genes. However, comprehensive characterization of TCP gene targets is still lacking. Loss of function of the class I TCP gene AtTCP8 attenuates early immune signaling and, when combined with mutations in AtTCP14 and AtTCP15, additional layers of defense signaling in Arabidopsis (Arabidopsis thaliana). Here, we focus on TCP8, the most poorly characterized of the three to date. We used chromatin immunoprecipitation and RNA sequencing to identify TCP8-bound gene promoters and differentially regulated genes in the tcp8 mutant; these datasets were heavily enriched in signaling components for multiple phytohormone pathways, including brassinosteroids (BRs), auxin, and jasmonic acid. Using BR signaling as a representative example, we showed that TCP8 directly binds and activates the promoters of the key BR transcriptional regulatory genes BRASSINAZOLE-RESISTANT1 (BZR1) and BRASSINAZOLE-RESISTANT2 (BZR2/BES1). Furthermore, tcp8 mutant seedlings exhibited altered BR-responsive growth patterns and complementary reductions in BZR2 transcript levels, while TCP8 protein demonstrated BR-responsive changes in subnuclear localization and transcriptional activity. We conclude that one explanation for the substantial targeting of TCP8 alongside other TCP family members by pathogen effectors may lie in its role as a modulator of BR and other plant hormone signaling pathways.
    MeSH term(s) Arabidopsis/metabolism ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Brassinosteroids/metabolism ; Gene Expression Regulation, Plant ; Indoleacetic Acids/metabolism ; Plant Growth Regulators/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Virulence Factors/metabolism
    Chemical Substances Arabidopsis Proteins ; Brassinosteroids ; Indoleacetic Acids ; Plant Growth Regulators ; Transcription Factors ; Virulence Factors
    Language English
    Publishing date 2022-07-22
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 208914-2
    ISSN 1532-2548 ; 0032-0889
    ISSN (online) 1532-2548
    ISSN 0032-0889
    DOI 10.1093/plphys/kiac332
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Book: Handbook of molecular and cellular methods in biology and medicine

    Cseke, Leland J

    2011  

    Abstract: Reflecting the milestones in the field that have occurred since the publication of the first edition, this book provides an updated tool kit that incorporates conventional as well as modern approaches to tackling biological and medicinal research in the ...

    Author's details edited by Leland J. Cseke ... [et al.]
    Abstract "Reflecting the milestones in the field that have occurred since the publication of the first edition, this book provides an updated tool kit that incorporates conventional as well as modern approaches to tackling biological and medicinal research in the post genomic era. The authors have evaluated, revised, and sometimes replaced all protocols with more efficient, reliable, or simpler ones. The book is also completely reorganized and covers topics of modern "omics" approaches, including genomics, proteomics, and metabolomics. This is followed coverage of the Manipulation of Biological Systems, including RNAi, and the use of microscopy"--Provided by publisher.
    MeSH term(s) Molecular Biology ; Cytological Techniques
    Language English
    Size xx, 715 p. :, ill.
    Edition 3rd ed.
    Publisher CRC Press/Taylor & Francis Group
    Publishing place Boca Raton
    Document type Book
    ISBN 9781420069389 ; 1420069381
    Database Catalogue of the US National Library of Medicine (NLM)

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  7. Article ; Online: Efficient CRISPR-Cas9 based cytosine base editors for phytopathogenic bacteria.

    Li, Chenhao / Wang, Longfei / Cseke, Leland J / Vasconcelos, Fernanda / Huguet-Tapia, Jose Carlos / Gassmann, Walter / Pauwels, Laurens / White, Frank F / Dong, Hansong / Yang, Bing

    Communications biology

    2023  Volume 6, Issue 1, Page(s) 56

    Abstract: Phytopathogenic bacteria play important roles in plant productivity, and developments in gene editing have potential for enhancing the genetic tools for the identification of critical genes in the pathogenesis process. CRISPR-based genome editing ... ...

    Abstract Phytopathogenic bacteria play important roles in plant productivity, and developments in gene editing have potential for enhancing the genetic tools for the identification of critical genes in the pathogenesis process. CRISPR-based genome editing variants have been developed for a wide range of applications in eukaryotes and prokaryotes. However, the unique mechanisms of different hosts restrict the wide adaptation for specific applications. Here, CRISPR-dCas9 (dead Cas9) and nCas9 (Cas9 nickase) deaminase vectors were developed for a broad range of phytopathogenic bacteria. A gene for a dCas9 or nCas9, cytosine deaminase CDA1, and glycosylase inhibitor fusion protein (cytosine base editor, or CBE) was applied to base editing under the control of different promoters. Results showed that the RecA promoter led to nearly 100% modification of the target region. When residing on the broad host range plasmid pHM1, CBE
    MeSH term(s) CRISPR-Cas Systems ; Cytosine/metabolism ; Gene Editing/methods ; Bacteria/genetics ; Bacteria/metabolism ; RNA
    Chemical Substances Cytosine (8J337D1HZY) ; RNA (63231-63-0)
    Language English
    Publishing date 2023-01-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-023-04451-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity.

    Garner, Christopher M / Spears, Benjamin J / Su, Jianbin / Cseke, Leland J / Smith, Samantha N / Rogan, Conner J / Gassmann, Walter

    PLoS genetics

    2021  Volume 17, Issue 2, Page(s) e1009026

    Abstract: Regulation of the plant immune system is important for controlling the specificity and amplitude of responses to pathogens and in preventing growth-inhibiting autoimmunity that leads to reductions in plant fitness. In previous work, we reported that ... ...

    Abstract Regulation of the plant immune system is important for controlling the specificity and amplitude of responses to pathogens and in preventing growth-inhibiting autoimmunity that leads to reductions in plant fitness. In previous work, we reported that SRFR1, a negative regulator of effector-triggered immunity, interacts with SNC1 and EDS1. When SRFR1 is non-functional in the Arabidopsis accession Col-0, SNC1 levels increase, causing a cascade of events that lead to autoimmunity phenotypes. Previous work showed that some members of the transcriptional co-repressor family TOPLESS interact with SNC1 to repress negative regulators of immunity. Therefore, to explore potential connections between SRFR1 and TOPLESS family members, we took a genetic approach that examined the effect of each TOPLESS member in the srfr1 mutant background. The data indicated that an additive genetic interaction exists between SRFR1 and two members of the TOPLESS family, TPR2 and TPR3, as demonstrated by increased stunting and elevated PR2 expression in srfr1 tpr2 and srfr1 tpr2 tpr3 mutants. Furthermore, the tpr2 mutation intensifies autoimmunity in the auto-active snc1-1 mutant, indicating a novel role of these TOPLESS family members in negatively regulating SNC1-dependent phenotypes. This negative regulation can also be reversed by overexpressing TPR2 in the srfr1 tpr2 background. Similar to TPR1 that positively regulates snc1-1 phenotypes by interacting with SNC1, we show here that TPR2 directly binds the N-terminal domain of SNC1. In addition, TPR2 interacts with TPR1 in vivo, suggesting that the opposite functions of TPR2 and TPR1 are based on titration of SNC1-TPR1 complexes by TPR2 or altered functions of a SNC1-TPR1-TPR2 complex. Thus, this work uncovers diverse functions of individual members of the TOPLESS family in Arabidopsis and provides evidence for the additive effect of transcriptional and post-transcriptional regulation of SNC1.
    MeSH term(s) Arabidopsis/genetics ; Arabidopsis/immunology ; Arabidopsis/metabolism ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Autoimmunity/genetics ; Gene Expression Regulation, Plant/genetics ; Gene Expression Regulation, Plant/immunology ; Molecular Chaperones/genetics ; Molecular Chaperones/metabolism ; Mutation ; Plant Immunity/genetics ; Plants, Genetically Modified ; Up-Regulation
    Chemical Substances AT1G04130 protein, Arabidopsis ; Arabidopsis Proteins ; Molecular Chaperones ; SNC1 protein, Arabidopsis ; SRFR1 protein, Arabidopsis ; topless protein, Arabidopsis ; topless-related 1 protein, Arabidopsis
    Language English
    Publishing date 2021-02-23
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2186725-2
    ISSN 1553-7404 ; 1553-7390
    ISSN (online) 1553-7404
    ISSN 1553-7390
    DOI 10.1371/journal.pgen.1009026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: A PCR-based genotyping method to distinguish between wild-type and ornamental varieties of Imperata cylindrica.

    Cseke, Leland J / Talley, Sharon M

    Journal of visualized experiments : JoVE

    2012  , Issue 60

    Abstract: Wild-type I. cylindrica (cogongrass) is one of the top ten worst invasive plants in the world, negatively impacting agricultural and natural resources in 73 different countries throughout Africa, Asia, Europe, New Zealand, Oceania and the Americas(1-2). ... ...

    Abstract Wild-type I. cylindrica (cogongrass) is one of the top ten worst invasive plants in the world, negatively impacting agricultural and natural resources in 73 different countries throughout Africa, Asia, Europe, New Zealand, Oceania and the Americas(1-2). Cogongrass forms rapidly-spreading, monodominant stands that displace a large variety of native plant species and in turn threaten the native animals that depend on the displaced native plant species for forage and shelter. To add to the problem, an ornamental variety [I. cylindrica var. koenigii (Retzius)] is widely marketed under the names of Imperata cylindrica 'Rubra', Red Baron, and Japanese blood grass (JBG). This variety is putatively sterile and noninvasive and is considered a desirable ornamental for its red-colored leaves. However, under the correct conditions, JBG can produce viable seed (Carol Holko, 2009 personal communication) and can revert to a green invasive form that is often indistinguishable from cogongrass as it takes on the distinguishing characteristics of the wild-type invasive variety(4) (Figure 1). This makes identification using morphology a difficult task even for well-trained plant taxonomists. Reversion of JBG to an aggressive green phenotype is also not a rare occurrence. Using sequence comparisons of coding and variable regions in both nuclear and chloroplast DNA, we have confirmed that JBG has reverted to the green invasive within the states of Maryland, South Carolina, and Missouri. JBG has been sold and planted in just about every state in the continental U.S. where there is not an active cogongrass infestation. The extent of the revert problem in not well understood because reverted plants are undocumented and often destroyed. Application of this molecular protocol provides a method to identify JBG reverts and can help keep these varieties from co-occurring and possibly hybridizing. Cogongrass is an obligate outcrosser and, when crossed with a different genotype, can produce viable wind-dispersed seeds that spread cogongrass over wide distances(5-7). JBG has a slightly different genotype than cogongrass and may be able to form viable hybrids with cogongrass. To add to the problem, JBG is more cold and shade tolerant than cogongrass(8-10), and gene flow between these two varieties is likely to generate hybrids that are more aggressive, shade tolerant, and cold hardy than wild-type cogongrass. While wild-type cogongrass currently infests over 490 million hectares worldwide, in the Southeast U.S. it infests over 500,000 hectares and is capable of occupying most of the U.S. as it rapidly spreads northward due to its broad niche and geographic potential(3,7,11). The potential of a genetic crossing is a serious concern for the USDA-APHIS Federal Noxious Week Program. Currently, the USDA-APHIS prohibits JBG in states where there are major cogongrass infestations (e.g., Florida, Alabama, Mississippi). However, preventing the two varieties from combining can prove more difficult as cogongrass and JBG expand their distributions. Furthermore, the distribution of the JBG revert is currently unknown and without the ability to identify these varieties through morphology, some cogongrass infestations may be the result of JBG reverts. Unfortunately, current molecular methods of identification typically rely on AFLP (Amplified Fragment Length Polymorphisms) and DNA sequencing, both of which are time consuming and costly. Here, we present the first cost-effective and reliable PCR-based molecular genotyping method to accurately distinguish between cogongrass and JBG revert.
    MeSH term(s) Genotyping Techniques/methods ; Poaceae/classification ; Poaceae/genetics ; Polymerase Chain Reaction/methods
    Language English
    Publishing date 2012-02-20
    Publishing country United States
    Document type Journal Article ; Video-Audio Media
    ZDB-ID 2259946-0
    ISSN 1940-087X ; 1940-087X
    ISSN (online) 1940-087X
    ISSN 1940-087X
    DOI 10.3791/3265
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book: Natural products from plants

    Cseke, Leland J

    2006  

    Author's details [edited by] Leland J. Cseke ... [et al.]
    Keywords Botanical chemistry. ; Plant products.
    Language English
    Size 611 p., [4] p. of plates :, ill. (some col.) ;, 27 cm.
    Edition 2nd ed.
    Publisher CRC/Taylor & Francis
    Publishing place Boca Raton, FL
    Document type Book
    ISBN 0849329760 ; 9780849329760
    Database NAL-Catalogue (AGRICOLA)

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