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  1. Article ; Online: Fructose Diet-Associated Molecular Alterations in Hypothalamus of Adolescent Rats: A Proteomic Approach.

    D'Ambrosio, Chiara / Cigliano, Luisa / Mazzoli, Arianna / Matuozzo, Monica / Nazzaro, Martina / Scaloni, Andrea / Iossa, Susanna / Spagnuolo, Maria Stefania

    Nutrients

    2023  Volume 15, Issue 2

    Abstract: Background: The enhanced consumption of fructose as added sugar represents a major health concern. Due to the complexity and multiplicity of hypothalamic functions, we aim to point out early molecular alterations triggered by a sugar-rich diet ... ...

    Abstract Background: The enhanced consumption of fructose as added sugar represents a major health concern. Due to the complexity and multiplicity of hypothalamic functions, we aim to point out early molecular alterations triggered by a sugar-rich diet throughout adolescence, and to verify their persistence until the young adulthood phase.
    Methods: Thirty days old rats received a high-fructose or control diet for 3 weeks. At the end of the experimental period, treated animals were switched to the control diet for further 3 weeks, and then analyzed in comparison with those that were fed the control diet for the entire experimental period.
    Results: Quantitative proteomics identified 19 differentially represented proteins, between control and fructose-fed groups, belonging to intermediate filament cytoskeleton, neurofilament, pore complex and mitochondrial respiratory chain complexes. Western blotting analysis confirmed proteomic data, evidencing a decreased abundance of mitochondrial respiratory complexes and voltage-dependent anion channel 1, the coregulator of mitochondrial biogenesis PGC-1α, and the protein subunit of neurofilaments α-internexin in fructose-fed rats. Diet-associated hypothalamic inflammation was also detected. Finally, the amount of brain-derived neurotrophic factor and its high-affinity receptor TrkB, as well as of synaptophysin, synaptotagmin, and post-synaptic protein PSD-95 was reduced in sugar-fed rats. Notably, deregulated levels of all proteins were fully rescued after switching to the control diet.
    Conclusions: A short-term fructose-rich diet in adolescent rats induces hypothalamic inflammation and highly affects mitochondrial and cytoskeletal compartments, as well as the level of specific markers of brain function; above-reported effects are reverted after switching animals to the control diet.
    MeSH term(s) Rats ; Animals ; Fructose/adverse effects ; Fructose/metabolism ; Proteomics ; Diet ; Hypothalamus/metabolism ; Inflammation/metabolism
    Chemical Substances Fructose (30237-26-4)
    Language English
    Publishing date 2023-01-16
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2518386-2
    ISSN 2072-6643 ; 2072-6643
    ISSN (online) 2072-6643
    ISSN 2072-6643
    DOI 10.3390/nu15020475
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: AUF1 Recognizes 8-Oxo-Guanosine Embedded in DNA and Stimulates APE1 Endoribonuclease Activity.

    Malfatti, Matilde Clarissa / Codrich, Marta / Dalla, Emiliano / D'Ambrosio, Chiara / Storici, Francesca / Scaloni, Andrea / Tell, Gianluca

    Antioxidants & redox signaling

    2023  Volume 39, Issue 7-9, Page(s) 411–431

    Abstract: Aims: ...

    Abstract Aims:
    MeSH term(s) Animals ; Humans ; DNA Repair ; DNA-(Apurinic or Apyrimidinic Site) Lyase/genetics ; DNA-(Apurinic or Apyrimidinic Site) Lyase/chemistry ; DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism ; Hydrogen Peroxide ; Proteomics ; DNA/metabolism ; DNA Damage ; Endoribonucleases/metabolism ; Genomic Instability ; Mammals/metabolism
    Chemical Substances DNA-(Apurinic or Apyrimidinic Site) Lyase (EC 4.2.99.18) ; Hydrogen Peroxide (BBX060AN9V) ; DNA (9007-49-2) ; Endoribonucleases (EC 3.1.-)
    Language English
    Publishing date 2023-04-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1483836-9
    ISSN 1557-7716 ; 1523-0864
    ISSN (online) 1557-7716
    ISSN 1523-0864
    DOI 10.1089/ars.2022.0105
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: FKBP51 plays an essential role in Akt ubiquitination that requires Hsp90 and PHLPP.

    Tufano, Martina / Marrone, Laura / D'Ambrosio, Chiara / Di Giacomo, Valeria / Urzini, Simona / Xiao, Yichuan / Matuozzo, Monica / Scaloni, Andrea / Romano, Maria Fiammetta / Romano, Simona

    Cell death & disease

    2023  Volume 14, Issue 2, Page(s) 116

    Abstract: FKBP51 plays a relevant role in sustaining cancer cells, particularly melanoma. This cochaperone participates in several signaling pathways. FKBP51 forms a complex with Akt and PHLPP, which is reported to dephosphorylate Akt. Given the recent discovery ... ...

    Abstract FKBP51 plays a relevant role in sustaining cancer cells, particularly melanoma. This cochaperone participates in several signaling pathways. FKBP51 forms a complex with Akt and PHLPP, which is reported to dephosphorylate Akt. Given the recent discovery of a spliced FKBP51 isoform, in this paper, we interrogate the canonical and spliced isoforms in regulation of Akt activation. We show that the TPR domain of FKBP51 mediates Akt ubiquitination at K63, which is an essential step for Akt activation. The spliced FKBP51, lacking such domain, cannot link K63-Ub residues to Akt. Unexpectedly, PHLPP silencing does not foster phosphorylation of Akt, and its overexpression even induces phosphorylation of Akt. PHLPP stabilizes levels of E3-ubiquitin ligase TRAF6 and supports K63-ubiquitination of Akt. The interactome profile of FKBP51 from melanoma cells highlights a relevant role for PHLPP in improving oncogenic hallmarks, particularly, cell proliferation.
    MeSH term(s) Humans ; Melanoma/genetics ; Phosphorylation ; Proto-Oncogene Proteins c-akt/genetics ; Proto-Oncogene Proteins c-akt/metabolism ; Signal Transduction ; Ubiquitination ; Tacrolimus Binding Proteins/genetics ; Tacrolimus Binding Proteins/metabolism ; HSP90 Heat-Shock Proteins/genetics ; HSP90 Heat-Shock Proteins/metabolism ; Phosphoprotein Phosphatases/genetics ; Phosphoprotein Phosphatases/metabolism
    Chemical Substances Proto-Oncogene Proteins c-akt (EC 2.7.11.1) ; tacrolimus binding protein 5 (EC 5.2.1.8) ; Tacrolimus Binding Proteins (EC 5.2.1.-) ; HSP90 Heat-Shock Proteins ; Phosphoprotein Phosphatases (EC 3.1.3.16)
    Language English
    Publishing date 2023-02-13
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2541626-1
    ISSN 2041-4889 ; 2041-4889
    ISSN (online) 2041-4889
    ISSN 2041-4889
    DOI 10.1038/s41419-023-05629-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Novel Biomarkers of Mastitis in Goat Milk Revealed by MALDI-TOF-MS-Based Peptide Profiling

    Matuozzo, Monica / Spagnuolo, Maria Stefania / Hussein, Hany A / Gomaa, A. M / Scaloni, Andrea / D’Ambrosio, Chiara

    Biology. 2020 July 28, v. 9, no. 8

    2020  

    Abstract: Mastitis is the most common infection of dairy goats impairing milk production and quality, which is usually recognized by mammary gland visual inspection and palpation. Subclinical forms of the disease are also widely represented, which lack the typical ...

    Abstract Mastitis is the most common infection of dairy goats impairing milk production and quality, which is usually recognized by mammary gland visual inspection and palpation. Subclinical forms of the disease are also widely represented, which lack the typical signs of the clinical ones but are still associated with reduced production and safety for human consumption of milk, generally presenting a high bacterial count. In order to obtain novel analytical tools for rapid and non-invasive diagnosis of mastitis in goats, we analyzed milk samples from healthy, subclinical and clinical mastitic animals with a MALDI-TOF-MS-based peptidomic platform, generating disease group-specific spectral profiles whose signal intensity and mass values were analyzed by statistics. Peculiar spectral signatures of mastitis with respect to the control were identified, while no significant spectral differences were observed between clinical and subclinical milk samples. Discriminant signals were assigned to specific peptides through nanoLC-ESI-Q-Orbitrap-MS/MS experiments. Some of these molecules were predicted to have an antimicrobial activity based on their strong similarity with homolog bioactive compounds from other mammals. Through the definition of a panel of peptide biomarkers, this study provides a very rapid and low-cost method to routinely detect mastitic milk samples even though no evident clinical signs in the mammary gland are observed.
    Keywords antimicrobial properties ; bioactive compounds ; biomarkers ; dairy goats ; goat milk ; humans ; infection ; mammary glands ; mass ; mastitis ; milk ; milk production ; peptides ; plate count ; sampling ; signs and symptoms (animals and humans) ; statistics
    Language English
    Dates of publication 2020-0728
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    Note NAL-light
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology9080193
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Downregulation of praja2 restrains endocytosis and boosts tyrosine kinase receptors in kidney cancer.

    Rinaldi, Laura / Chiuso, Francesco / Senatore, Emanuela / Borzacchiello, Domenica / Lignitto, Luca / Iannucci, Rosa / Donne, Rossella Delle / Fuggi, Mariano / Reale, Carla / Russo, Filomena / Russo, Nicola Antonino / Giurato, Giorgio / Rizzo, Francesca / Sellitto, Assunta / Santangelo, Michele / De Biase, Davide / Paciello, Orlando / D'Ambrosio, Chiara / Amente, Stefano /
    Garbi, Corrado / Dalla, Emiliano / Scaloni, Andrea / Weisz, Alessandro / Ambrosino, Concetta / Insabato, Luigi / Feliciello, Antonio

    Communications biology

    2024  Volume 7, Issue 1, Page(s) 208

    Abstract: Clear cell renal cell carcinoma (ccRCC) is the most common kidney cancer in the adult population. Late diagnosis, resistance to therapeutics and recurrence of metastatic lesions account for the highest mortality rate among kidney cancer patients. ... ...

    Abstract Clear cell renal cell carcinoma (ccRCC) is the most common kidney cancer in the adult population. Late diagnosis, resistance to therapeutics and recurrence of metastatic lesions account for the highest mortality rate among kidney cancer patients. Identifying novel biomarkers for early cancer detection and elucidating the mechanisms underlying ccRCC will provide clues to treat this aggressive malignant tumor. Here, we report that the ubiquitin ligase praja2 forms a complex with-and ubiquitylates the AP2 adapter complex, contributing to receptor endocytosis and clearance. In human RCC tissues and cells, downregulation of praja2 by oncogenic miRNAs (oncomiRs) and the proteasome markedly impairs endocytosis and clearance of the epidermal growth factor receptor (EGFR), and amplifies downstream mitogenic and proliferative signaling. Restoring praja2 levels in RCC cells downregulates EGFR, rewires cancer cell metabolism and ultimately inhibits tumor cell growth and metastasis. Accordingly, genetic ablation of praja2 in mice upregulates RTKs (i.e. EGFR and VEGFR) and induces epithelial and vascular alterations in the kidney tissue.In summary, our findings identify a regulatory loop between oncomiRs and the ubiquitin proteasome system that finely controls RTKs endocytosis and clearance, positively impacting mitogenic signaling and kidney cancer growth.
    MeSH term(s) Adult ; Animals ; Humans ; Mice ; Carcinoma, Renal Cell/genetics ; Carcinoma, Renal Cell/pathology ; Down-Regulation ; Endocytosis ; ErbB Receptors/genetics ; ErbB Receptors/metabolism ; Kidney Neoplasms/genetics ; Kidney Neoplasms/pathology ; Proteasome Endopeptidase Complex/metabolism ; Receptor Protein-Tyrosine Kinases/genetics ; Ubiquitin/metabolism
    Chemical Substances ErbB Receptors (EC 2.7.10.1) ; Proteasome Endopeptidase Complex (EC 3.4.25.1) ; Receptor Protein-Tyrosine Kinases (EC 2.7.10.1) ; Ubiquitin ; PJA2 protein, human (EC 2.3.2.27) ; PJA2 protein, mouse (EC 2.3.2.27)
    Language English
    Publishing date 2024-02-20
    Publishing country England
    Document type Journal Article
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-024-05823-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: A comparative study of carbonic anhydrase activity in lymphocytes from colorectal cancer tissues and adjacent healthy counterparts.

    Nannini, Giulia / De Luca, Viviana / D'Ambrosio, Chiara / Scaloni, Andrea / Taddei, Antonio / Ringressi, Maria Novella / Cianchi, Fabio / Staderini, Fabio / Capasso, Clemente / Amedei, Amedeo / Supuran, Claudiu T

    Journal of enzyme inhibition and medicinal chemistry

    2022  Volume 37, Issue 1, Page(s) 1651–1655

    Abstract: Several carbonic anhydrase (CA, EC 4.2.1.1) isoforms play an essential role in processes connected to tumorigenesis, as they efficiently accelerate the hydration of carbon dioxide to bicarbonate and proton. In this context, examples are CA IX and CA XII, ...

    Abstract Several carbonic anhydrase (CA, EC 4.2.1.1) isoforms play an essential role in processes connected to tumorigenesis, as they efficiently accelerate the hydration of carbon dioxide to bicarbonate and proton. In this context, examples are CA IX and CA XII, which were proved to be upregulated in many solid malignancies. On the other hand, cancer and the immune system are inextricably linked, and targeting the immune checkpoints recently was shown to efficiently improve the treatment of malignancies. In this study, we have investigated the expression of CA isoforms in tumour-infiltrating lymphocytes (TILs) that, according to the immunosurveillance theory, were suggested to have a crucial role in the development of colorectal cancer (CRC). T lymphocytes isolated from healthy surrounding mucosa showed a higher CA activity compared to those present in tumour and peripheral blood in the same patients. CA I and II were confirmed as enzyme isoforms involved in the process, as determined by proteomic analysis of corresponding TIL samples. These preliminary findings suggest a dysregulation of the local immune response in the CRC tissues and a loss of effective anticancer mechanisms mediated by CAs therein.
    MeSH term(s) Antigens, Neoplasm/metabolism ; Carbonic Anhydrase IX/metabolism ; Carbonic Anhydrase Inhibitors/pharmacology ; Carbonic Anhydrases/metabolism ; Colorectal Neoplasms ; Humans ; Lymphocytes ; Proteomics ; Structure-Activity Relationship
    Chemical Substances Antigens, Neoplasm ; Carbonic Anhydrase Inhibitors ; Carbonic Anhydrase IX (EC 4.2.1.1) ; Carbonic Anhydrases (EC 4.2.1.1)
    Language English
    Publishing date 2022-06-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 2082578-X
    ISSN 1475-6374 ; 1475-6366
    ISSN (online) 1475-6374
    ISSN 1475-6366
    DOI 10.1080/14756366.2022.2085694
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Novel Biomarkers of Mastitis in Goat Milk Revealed by MALDI-TOF-MS-Based Peptide Profiling.

    Matuozzo, Monica / Spagnuolo, Maria Stefania / Hussein, Hany A / Gomaa, A M / Scaloni, Andrea / D'Ambrosio, Chiara

    Biology

    2020  Volume 9, Issue 8

    Abstract: Mastitis is the most common infection of dairy goats impairing milk production and quality, which is usually recognized by mammary gland visual inspection and palpation. Subclinical forms of the disease are also widely represented, which lack the typical ...

    Abstract Mastitis is the most common infection of dairy goats impairing milk production and quality, which is usually recognized by mammary gland visual inspection and palpation. Subclinical forms of the disease are also widely represented, which lack the typical signs of the clinical ones but are still associated with reduced production and safety for human consumption of milk, generally presenting a high bacterial count. In order to obtain novel analytical tools for rapid and non-invasive diagnosis of mastitis in goats, we analyzed milk samples from healthy, subclinical and clinical mastitic animals with a MALDI-TOF-MS-based peptidomic platform, generating disease group-specific spectral profiles whose signal intensity and mass values were analyzed by statistics. Peculiar spectral signatures of mastitis with respect to the control were identified, while no significant spectral differences were observed between clinical and subclinical milk samples. Discriminant signals were assigned to specific peptides through nanoLC-ESI-Q-Orbitrap-MS/MS experiments. Some of these molecules were predicted to have an antimicrobial activity based on their strong similarity with homolog bioactive compounds from other mammals. Through the definition of a panel of peptide biomarkers, this study provides a very rapid and low-cost method to routinely detect mastitic milk samples even though no evident clinical signs in the mammary gland are observed.
    Language English
    Publishing date 2020-07-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology9080193
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Cleavage of the APE1 N-Terminal Domain in Acute Myeloid Leukemia Cells Is Associated with Proteasomal Activity.

    Lirussi, Lisa / Antoniali, Giulia / Scognamiglio, Pasqualina Liana / Marasco, Daniela / Dalla, Emiliano / D'Ambrosio, Chiara / Arena, Simona / Scaloni, Andrea / Tell, Gianluca

    Biomolecules

    2020  Volume 10, Issue 4

    Abstract: Apurinic/apyrimidinic endonuclease 1 (APE1), the main mammalian AP-endonuclease for the resolution of DNA damages through the base excision repair (BER) pathway, acts as a multifunctional protein in different key cellular processes. The signals to ensure ...

    Abstract Apurinic/apyrimidinic endonuclease 1 (APE1), the main mammalian AP-endonuclease for the resolution of DNA damages through the base excision repair (BER) pathway, acts as a multifunctional protein in different key cellular processes. The signals to ensure temporo-spatial regulation of APE1 towards a specific function are still a matter of debate. Several studies have suggested that post-translational modifications (PTMs) act as dynamic molecular mechanisms for controlling APE1 functionality. Interestingly, the N-terminal region of APE1 is a disordered portion functioning as an interface for protein binding, as an acceptor site for PTMs and as a target of proteolytic cleavage. We previously demonstrated a cytoplasmic accumulation of truncated APE1 in acute myeloid leukemia (AML) cells in association with a mutated form of nucleophosmin having aberrant cytoplasmic localization (NPM1c+). Here, we mapped the proteolytic sites of APE1 in AML cells at Lys31 and Lys32 and showed that substitution of Lys27, 31, 32 and 35 with alanine impairs proteolysis. We found that the loss of the APE1 N-terminal domain in AML cells is dependent on the proteasome, but not on granzyme A/K as described previously. The present work identified the proteasome as a contributing machinery involved in APE1 cleavage in AML cells, suggesting that acetylation can modulate this process.
    MeSH term(s) Acetylation ; Amino Acid Sequence ; Cell Line, Tumor ; DNA-(Apurinic or Apyrimidinic Site) Lyase/chemistry ; DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism ; Humans ; Leukemia, Myeloid, Acute/pathology ; Proteasome Endopeptidase Complex/metabolism ; Protein Domains ; Proteolysis
    Chemical Substances Proteasome Endopeptidase Complex (EC 3.4.25.1) ; APEX1 protein, human (EC 4.2.99.18) ; DNA-(Apurinic or Apyrimidinic Site) Lyase (EC 4.2.99.18)
    Language English
    Publishing date 2020-03-31
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom10040531
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Architecture of The Human Ape1 Interactome Defines Novel Cancers Signatures.

    Ayyildiz, Dilara / Antoniali, Giulia / D'Ambrosio, Chiara / Mangiapane, Giovanna / Dalla, Emiliano / Scaloni, Andrea / Tell, Gianluca / Piazza, Silvano

    Scientific reports

    2020  Volume 10, Issue 1, Page(s) 28

    Abstract: APE1 is essential in cancer cells due to its central role in the Base Excision Repair pathway of DNA lesions and in the transcriptional regulation of genes involved in tumor progression/chemoresistance. Indeed, APE1 overexpression correlates with ... ...

    Abstract APE1 is essential in cancer cells due to its central role in the Base Excision Repair pathway of DNA lesions and in the transcriptional regulation of genes involved in tumor progression/chemoresistance. Indeed, APE1 overexpression correlates with chemoresistance in more aggressive cancers, and APE1 protein-protein interactions (PPIs) specifically modulate different protein functions in cancer cells. Although important, a detailed investigation on the nature and function of protein interactors regulating APE1 role in tumor progression and chemoresistance is still lacking. The present work was aimed at analyzing the APE1-PPI network with the goal of defining bad prognosis signatures through systematic bioinformatics analysis. By using a well-characterized HeLa cell model stably expressing a flagged APE1 form, which was subjected to extensive proteomics analyses for immunocaptured complexes from different subcellular compartments, we here demonstrate that APE1 is a central hub connecting different subnetworks largely composed of proteins belonging to cancer-associated communities and/or involved in RNA- and DNA-metabolism. When we performed survival analysis in real cancer datasets, we observed that more than 80% of these APE1-PPI network elements is associated with bad prognosis. Our findings, which are hypothesis generating, strongly support the possibility to infer APE1-interactomic signatures associated with bad prognosis of different cancers; they will be of general interest for the future definition of novel predictive disease biomarkers. Future studies will be needed to assess the function of APE1 in the protein complexes we discovered. Data are available via ProteomeXchange with identifier PXD013368.
    MeSH term(s) Biomarkers, Tumor/genetics ; Biomarkers, Tumor/metabolism ; DNA-(Apurinic or Apyrimidinic Site) Lyase/genetics ; DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism ; Datasets as Topic ; Gene Expression Regulation, Neoplastic ; Gene Regulatory Networks ; HeLa Cells ; Humans ; Neoplasms/genetics ; Neoplasms/metabolism ; Neoplasms/pathology ; Prognosis ; Protein Interaction Maps ; Survival Rate
    Chemical Substances Biomarkers, Tumor ; APEX1 protein, human (EC 4.2.99.18) ; DNA-(Apurinic or Apyrimidinic Site) Lyase (EC 4.2.99.18)
    Language English
    Publishing date 2020-01-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-019-56981-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Identification of RNA-binding proteins that partner with Lin28a to regulate Dnmt3a expression.

    Parisi, Silvia / Castaldo, Daniela / Piscitelli, Silvia / D'Ambrosio, Chiara / Divisato, Giuseppina / Passaro, Fabiana / Avolio, Rosario / Castellucci, Alessia / Gianfico, Paolo / Masullo, Mariorosario / Scaloni, Andrea / Russo, Tommaso

    Scientific reports

    2021  Volume 11, Issue 1, Page(s) 2345

    Abstract: Lin28 is an evolutionary conserved RNA-binding protein that plays important roles during embryonic development and tumorigenesis. It regulates gene expression through two different post-transcriptional mechanisms. The first one is based on the regulation ...

    Abstract Lin28 is an evolutionary conserved RNA-binding protein that plays important roles during embryonic development and tumorigenesis. It regulates gene expression through two different post-transcriptional mechanisms. The first one is based on the regulation of miRNA biogenesis, in particular that of the let-7 family, whose expression is suppressed by Lin28. Thus, loss of Lin28 leads to the upregulation of mRNAs that are targets of let-7 species. The second mechanism is based on the direct interaction of Lin28 with a large number of mRNAs, which results in the regulation of their translation. This second mechanism remains poorly understood. To address this issue, we purified high molecular weight complexes containing Lin28a in mouse embryonic stem cells (ESCs). Numerous proteins, co-purified with Lin28a, were identified by proteomic procedures and tested for their possible role in Lin28a-dependent regulation of the mRNA encoding DNA methyltransferase 3a (Dnmt3a). The results show that Lin28a activity is dependent on many proteins, including three helicases and four RNA-binding proteins. The suppression of four of these proteins, namely Ddx3x, Hnrnph1, Hnrnpu or Syncrip, interferes with the binding of Lin28a to the Dnmt3a mRNA, thus suggesting that they are part of an oligomeric ribonucleoprotein complex that is necessary for Lin28a activity.
    MeSH term(s) 3' Untranslated Regions/genetics ; 3' Untranslated Regions/physiology ; Blotting, Western ; Chromatography, Gel ; DNA (Cytosine-5-)-Methyltransferases/genetics ; DNA (Cytosine-5-)-Methyltransferases/metabolism ; Humans ; Immunoprecipitation ; Proteomics/methods ; RNA-Binding Proteins/genetics ; RNA-Binding Proteins/metabolism
    Chemical Substances 3' Untranslated Regions ; Lin28A protein, human ; RNA-Binding Proteins ; DNA (Cytosine-5-)-Methyltransferases (EC 2.1.1.37) ; DNA methyltransferase 3A (EC 2.1.1.37)
    Language English
    Publishing date 2021-01-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-021-81429-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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