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  1. Article ; Online: Neutrophils: from IBD to the gut microbiota.

    Danne, Camille / Skerniskyte, Jurate / Marteyn, Benoit / Sokol, Harry

    Nature reviews. Gastroenterology & hepatology

    2023  Volume 21, Issue 3, Page(s) 184–197

    Abstract: Inflammatory bowel disease (IBD) is a chronic inflammatory condition of the gastrointestinal tract that results from dysfunction in innate and/or adaptive immune responses. Impaired innate immunity, which leads to lack of control of an altered intestinal ...

    Abstract Inflammatory bowel disease (IBD) is a chronic inflammatory condition of the gastrointestinal tract that results from dysfunction in innate and/or adaptive immune responses. Impaired innate immunity, which leads to lack of control of an altered intestinal microbiota and to activation of the adaptive immune system, promotes a secondary inflammatory response that is responsible for tissue damage. Neutrophils are key players in innate immunity in IBD, but their roles have been neglected compared with those of other immune cells. The latest studies on neutrophils in IBD have revealed unexpected complexities, with heterogeneous populations and dual functions, both deleterious and protective, for the host. In parallel, interconnections between disease development, intestinal microbiota and neutrophils have been highlighted. Numerous IBD susceptibility genes (such as NOD2, NCF4, LRRK2, CARD9) are involved in neutrophil functions related to defence against microorganisms. Moreover, severe monogenic diseases involving dysfunctional neutrophils, including chronic granulomatous disease, are characterized by intestinal inflammation that mimics IBD and by alterations in the intestinal microbiota. This observation demonstrates the dialogue between neutrophils, gut inflammation and the microbiota. Neutrophils affect microbiota composition and function in several ways. In return, microbial factors, including metabolites, regulate neutrophil production and function directly and indirectly. It is crucial to further investigate the diverse roles played by neutrophils in host-microbiota interactions, both at steady state and in inflammatory conditions, to develop new IBD therapies. In this Review, we discuss the roles of neutrophils in IBD, in light of emerging evidence proving strong interconnections between neutrophils and the gut microbiota, especially in an inflammatory context.
    MeSH term(s) Humans ; Gastrointestinal Microbiome ; Neutrophils ; Microbiota ; Inflammatory Bowel Diseases ; Inflammation
    Language English
    Publishing date 2023-12-18
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2493722-8
    ISSN 1759-5053 ; 1759-5045
    ISSN (online) 1759-5053
    ISSN 1759-5045
    DOI 10.1038/s41575-023-00871-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Butyrate, a new microbiota-dependent player in CD8+ T cells immunity and cancer therapy?

    Danne, Camille / Sokol, Harry

    Cell reports. Medicine

    2021  Volume 2, Issue 7, Page(s) 100328

    Abstract: The intestinal microbiota is a new promising avenue in cancer immunotherapy, but mechanisms remain elusive. He et al. demonstrate that butyrate, a bacterial metabolite, enhances the CD8+ T cell response and improve chemotherapy efficacy through ID2- ... ...

    Abstract The intestinal microbiota is a new promising avenue in cancer immunotherapy, but mechanisms remain elusive. He et al. demonstrate that butyrate, a bacterial metabolite, enhances the CD8+ T cell response and improve chemotherapy efficacy through ID2-dependent IL-12 signaling.
    Language English
    Publishing date 2021-07-07
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Comment
    ISSN 2666-3791
    ISSN (online) 2666-3791
    DOI 10.1016/j.xcrm.2021.100328
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Recipient factors in faecal microbiota transplantation: one stool does not fit all.

    Danne, Camille / Rolhion, Nathalie / Sokol, Harry

    Nature reviews. Gastroenterology & hepatology

    2021  Volume 18, Issue 7, Page(s) 503–513

    Abstract: Faecal microbiota transplantation (FMT) is a promising therapy for chronic diseases associated with gut microbiota alterations. FMT cures 90% of recurrent Clostridioides difficile infections. However, in complex diseases, such as inflammatory bowel ... ...

    Abstract Faecal microbiota transplantation (FMT) is a promising therapy for chronic diseases associated with gut microbiota alterations. FMT cures 90% of recurrent Clostridioides difficile infections. However, in complex diseases, such as inflammatory bowel disease, irritable bowel syndrome and metabolic syndrome, its efficacy remains variable. It is accepted that donor selection and sample administration are key determinants of FMT success, yet little is known about the recipient factors that affect it. In this Perspective, we discuss the effects of recipient parameters, such as genetics, immunity, microbiota and lifestyle, on donor microbiota engraftment and clinical efficacy. Emerging evidence supports the possibility that controlling inflammation in the recipient intestine might facilitate engraftment by reducing host immune system pressure on the newly transferred microbiota. Deciphering FMT engraftment rules and developing novel therapeutic strategies are priorities to alleviate the burden of chronic diseases associated with an altered gut microbiota such as inflammatory bowel disease.
    MeSH term(s) Digestive System Diseases/genetics ; Digestive System Diseases/therapy ; Donor Selection ; Fecal Microbiota Transplantation ; Gastrointestinal Microbiome/genetics ; Gastrointestinal Microbiome/immunology ; Gastrointestinal Microbiome/physiology ; Humans ; Inflammation/etiology ; Inflammation/physiopathology ; Inflammation/therapy ; Life Style ; Treatment Outcome
    Language English
    Publishing date 2021-04-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2493722-8
    ISSN 1759-5053 ; 1759-5045
    ISSN (online) 1759-5053
    ISSN 1759-5045
    DOI 10.1038/s41575-021-00441-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Helicobacter hepaticus

    Danne, Camille / Powrie, Fiona

    Microbial cell (Graz, Austria)

    2018  Volume 5, Issue 4, Page(s) 208–211

    Abstract: A high density of microbes inhabits the intestine, helping with food digestion, vitamin synthesis, xenobiotic detoxification, pathogen resistance and immune system maturation. Crucial for human health, communities of commensal bacteria (collectively ... ...

    Abstract A high density of microbes inhabits the intestine, helping with food digestion, vitamin synthesis, xenobiotic detoxification, pathogen resistance and immune system maturation. Crucial for human health, communities of commensal bacteria (collectively termed microbiota) benefit in return from a nutrient-rich environment. Host-microbiota mutualism results from a long-term co-adaptation. At barrier surfaces, immune cells distinguish harmful from commensal bacteria and tolerate non-self organisms at close proximity to the mucosa; gut inhabitants have developed strategies to ensure beneficial conditions in their preferred niche. So far, the complex dialogue of host-microbial mutualism is poorly understood.
    Language English
    Publishing date 2018-03-22
    Publishing country Austria
    Document type Journal Article ; Comment
    ZDB-ID 2814756-X
    ISSN 2311-2638
    ISSN 2311-2638
    DOI 10.15698/mic2018.04.626
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Saccharomyces boulardii

    Spatz, Madeleine / Wang, Yazhou / Lapiere, Alexia / Da Costa, Gregory / Michaudel, Chloé / Danne, Camille / Michel, Marie-Laure / Langella, Philippe / Sokol, Harry / Richard, Mathias L

    Frontiers in medicine

    2023  Volume 10, Page(s) 1087715

    Abstract: Introduction: Antibiotic effects on gut bacteria have been widely studied, but very little is known about the consequences of such treatments on the mycobiota, the fungal part of the microbiota and how the length of administration influences both ... ...

    Abstract Introduction: Antibiotic effects on gut bacteria have been widely studied, but very little is known about the consequences of such treatments on the mycobiota, the fungal part of the microbiota and how the length of administration influences both microbiota. Here, we examined the effect of antibiotics (ATB) on the composition of bacterial and fungal microbiota and how the administration of
    Methods: In order to get closer to the human microbiota, the mice used in this study were subjected to fecal microbiota transfer (FMT) using human feces and subsequently called human microbiotaassociated (HMA) mice. These mice were then treated with amoxicillinclavulanate antibiotics and supplemented with
    Results: We showed that the administration of
    Discussion: In this study, we provide a comprehensive analysis of how probiotic yeast administration can influence the fungal and bacterial microbiota in a model of broad-spectrum antibiotherapy.
    Language English
    Publishing date 2023-08-04
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2775999-4
    ISSN 2296-858X
    ISSN 2296-858X
    DOI 10.3389/fmed.2023.1087715
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Antibiotic treatment using amoxicillin-clavulanic acid impairs gut mycobiota development through modification of the bacterial ecosystem.

    Spatz, Madeleine / Da Costa, Gregory / Ventin-Holmberg, Rebecka / Planchais, Julien / Michaudel, Chloé / Wang, Yazhou / Danne, Camille / Lapiere, Alexia / Michel, Marie-Laure / Kolho, Kaija-Leena / Langella, Philippe / Sokol, Harry / Richard, Mathias L

    Microbiome

    2023  Volume 11, Issue 1, Page(s) 73

    Abstract: Background: Effects of antibiotics on gut bacteria have been widely studied, but very little is known about the consequences of such treatments on the fungal microbiota (mycobiota). It is commonly believed that fungal load increases in the ... ...

    Abstract Background: Effects of antibiotics on gut bacteria have been widely studied, but very little is known about the consequences of such treatments on the fungal microbiota (mycobiota). It is commonly believed that fungal load increases in the gastrointestinal tract following antibiotic treatment, but better characterization is clearly needed of how antibiotics directly or indirectly affect the mycobiota and thus the entire microbiota.
    Design: We used samples from humans (infant cohort) and mice (conventional and human microbiota-associated mice) to study the consequences of antibiotic treatment (amoxicillin-clavulanic acid) on the intestinal microbiota. Bacterial and fungal communities were subjected to qPCR or 16S and ITS2 amplicon-based sequencing for microbiota analysis. In vitro assays further characterized bacterial-fungal interactions, with mixed cultures between specific bacteria and fungi.
    Results: Amoxicillin-clavulanic acid treatment triggered a decrease in the total fungal population in mouse feces, while other antibiotics had opposite effects on the fungal load. This decrease is accompanied by a total remodelling of the fungal population with the enrichment in Aspergillus, Cladosporium, and Valsa genera. In the presence of amoxicillin-clavulanic acid, microbiota analysis showed a remodeling of bacterial microbiota with an increase in specific bacteria belonging to the Enterobacteriaceae. Using in vitro assays, we isolated different Enterobacteriaceae species and explored their effect on different fungal strains. We showed that Enterobacter hormaechei was able to reduce the fungal population in vitro and in vivo through yet unknown mechanisms.
    Conclusions: Bacteria and fungi have strong interactions within the microbiota; hence, the perturbation initiated by an antibiotic treatment targeting the bacterial community can have complex consequences and can induce opposite alterations of the mycobiota. Interestingly, amoxicillin-clavulanic acid treatment has a deleterious effect on the fungal community, which may have been partially due to the overgrowth of specific bacterial strains with inhibiting or competing effects on fungi. This study provides new insights into the interactions between fungi and bacteria of the intestinal microbiota and might offer new strategies to modulate gut microbiota equilibrium. Video Abstract.
    MeSH term(s) Humans ; Mice ; Animals ; Amoxicillin-Potassium Clavulanate Combination/pharmacology ; Anti-Bacterial Agents/pharmacology ; Gastrointestinal Tract/microbiology ; Microbiota ; Fungi ; Bacteria/genetics
    Chemical Substances Amoxicillin-Potassium Clavulanate Combination (74469-00-4) ; Anti-Bacterial Agents
    Language English
    Publishing date 2023-04-10
    Publishing country England
    Document type Video-Audio Media ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2697425-3
    ISSN 2049-2618 ; 2049-2618
    ISSN (online) 2049-2618
    ISSN 2049-2618
    DOI 10.1186/s40168-023-01516-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Cyberlindnera jadinii

    Hugot, Cindy / Poirier, Maxime / Spatz, Madeleine / Da Costa, Gregory / Michaudel, Chloé / Lapiere, Alexia / Danne, Camille / Martin, Valérie / Langella, Philippe / Sokol, Harry / Michel, Marie-Laure / Boyaval, Patrick / Richard, Mathias L

    mSystems

    2023  Volume 8, Issue 6, Page(s) e0084123

    Abstract: Importance: The food industry has always used many strains of microorganisms including fungi in their production processes. These strains have been widely characterized for their biotechnological value, but we still know very little about their ... ...

    Abstract Importance: The food industry has always used many strains of microorganisms including fungi in their production processes. These strains have been widely characterized for their biotechnological value, but we still know very little about their interaction capacities with the host at a time when the intestinal microbiota is at the center of many pathologies. In this study, we characterized five yeast strains from food production which allowed us to identify two new strains with high probiotic potential and beneficial effects in a model of intestinal inflammation.
    MeSH term(s) Candida ; Inflammation ; Kluyveromyces ; Probiotics/therapeutic use
    Language English
    Publishing date 2023-10-26
    Publishing country United States
    Document type Journal Article
    ISSN 2379-5077
    ISSN (online) 2379-5077
    DOI 10.1128/msystems.00841-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Pili of gram-positive bacteria: roles in host colonization.

    Danne, Camille / Dramsi, Shaynoor

    Research in microbiology

    2012  Volume 163, Issue 9-10, Page(s) 645–658

    Abstract: In the last decade, pili, which are encoded within pathogenicity islands, have been found in many Gram-positive bacteria, including the major streptococcal and enterococcal pathogens. These long proteinaceous polymers extending from the bacterial surface ...

    Abstract In the last decade, pili, which are encoded within pathogenicity islands, have been found in many Gram-positive bacteria, including the major streptococcal and enterococcal pathogens. These long proteinaceous polymers extending from the bacterial surface are constituted of covalently linked pilin subunits, which play major roles in adhesion and host colonization. They are also involved in biofilm formation, a characteristic life-style of the bacteria constituting the oral flora. Pili are highly immunogenic structures that are under the selective pressure of host immune responses. Indeed, pilus expression was found to be heterogeneous in several bacteria with the co-existence of two subpopulations expressing various levels of pili. The molecular mechanisms underlying this complex regulation are poorly characterized except for Streptococcus pneumoniae. In this review, we will discuss the roles of Gram-positive bacteria pili in adhesion to host extracellular matrix proteins, tissue tropism, biofilm formation, modulation of innate immune responses and their contribution to virulence, and in a second part the regulation of their expression. This overview should help to understand the rise of pili as an intensive field of investigation and pinpoints the areas that need further study.
    MeSH term(s) Bacterial Adhesion ; Biofilms/growth & development ; Fimbriae, Bacterial/chemistry ; Fimbriae, Bacterial/genetics ; Fimbriae, Bacterial/immunology ; Fimbriae, Bacterial/physiology ; Gene Expression Regulation, Bacterial ; Genes, Bacterial ; Genomic Islands ; Gram-Positive Bacteria/genetics ; Gram-Positive Bacteria/metabolism ; Gram-Positive Bacteria/pathogenicity ; Gram-Positive Bacteria/physiology ; Virulence
    Language English
    Publishing date 2012-11
    Publishing country France
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1004220-9
    ISSN 1769-7123 ; 0923-2508
    ISSN (online) 1769-7123
    ISSN 0923-2508
    DOI 10.1016/j.resmic.2012.10.012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Effects of Five Filamentous Fungi Used in Food Processes on In Vitro and In Vivo Gut Inflammation.

    Poirier, Maxime / Hugot, Cindy / Spatz, Madeleine / Da Costa, Gregory / Lapiere, Alexia / Michaudel, Chloé / Danne, Camille / Martin, Valérie / Langella, Philippe / Michel, Marie-Laure / Sokol, Harry / Boyaval, Patrick / Richard, Mathias L

    Journal of fungi (Basel, Switzerland)

    2022  Volume 8, Issue 9

    Abstract: Food processes use different microorganisms, from bacteria to fungi. Yeast strains have been extensively studied, especially Saccharomyces cerevisiae. However, to date, very little is known about the potential beneficial effects of molds on gut health as ...

    Abstract Food processes use different microorganisms, from bacteria to fungi. Yeast strains have been extensively studied, especially Saccharomyces cerevisiae. However, to date, very little is known about the potential beneficial effects of molds on gut health as part of gut microbiota. We undertook a comprehensive characterization of five mold strains, Penicillium camemberti, P. nalgiovense, P. roqueforti, Fusarium domesticum, and Geotrichum candidum used in food processes, on their ability to trigger or protect intestinal inflammation using in vitro human cell models and in vivo susceptibility to sodium dextran sulfate-induced colitis. Comparison of spore adhesion to epithelial cells showed a very wide disparity in results, with F. domesticum and P. roqueforti being the two extremes, with almost no adhesion and 20% adhesion, respectively. Interaction with human immune cells showed mild pro-inflammatory properties of all Penicillium strains and no effect of the others. However, the potential anti-inflammatory abilities detected for G. candidum in vitro were not confirmed in vivo after oral gavage to mice before and during induced colitis. According to the different series of experiments carried out in this study, the impact of the spores of these molds used in food production is limited, with no specific beneficial or harmful effect on the gut.
    Language English
    Publishing date 2022-08-23
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2784229-0
    ISSN 2309-608X ; 2309-608X
    ISSN (online) 2309-608X
    ISSN 2309-608X
    DOI 10.3390/jof8090893
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  10. Article ; Online: Deletion of both Dectin-1 and Dectin-2 affects the bacterial but not fungal gut microbiota and susceptibility to colitis in mice.

    Wang, Yazhou / Spatz, Madeleine / Da Costa, Gregory / Michaudel, Chloé / Lapiere, Alexia / Danne, Camille / Agus, Allison / Michel, Marie-Laure / Netea, Mihai G / Langella, Philippe / Sokol, Harry / Richard, Mathias L

    Microbiome

    2022  Volume 10, Issue 1, Page(s) 91

    Abstract: Background: Innate immunity genes have been reported to affect susceptibility to inflammatory bowel diseases (IBDs) and colitis in mice. Dectin-1, a receptor for fungal cell wall β-glucans, has been clearly implicated in gut microbiota modulation and ... ...

    Abstract Background: Innate immunity genes have been reported to affect susceptibility to inflammatory bowel diseases (IBDs) and colitis in mice. Dectin-1, a receptor for fungal cell wall β-glucans, has been clearly implicated in gut microbiota modulation and modification of the susceptibility to gut inflammation. Here, we explored the role of Dectin-1 and Dectin-2 (another receptor for fungal cell wall molecules) deficiency in intestinal inflammation.
    Design: Susceptibility to dextran sodium sulfate (DSS)-induced colitis was assessed in wild-type, Dectin-1 knockout (KO), Dectin-2KO, and double Dectin-1KO and Dectin-2KO (D-1/2KO) mice. Inflammation severity, as well as bacterial and fungal microbiota compositions, was monitored.
    Results: While deletion of Dectin-1 or Dectin-2 did not have a strong effect on DSS-induced colitis, double deletion of Dectin-1 and Dectin-2 significantly protected the mice from colitis. The protection was largely mediated by the gut microbiota, as demonstrated by fecal transfer experiments. Treatment of D-1/2KO mice with opportunistic fungal pathogens or antifungal agents did not affect the protection against gut inflammation, suggesting that the fungal microbiota had no role in the protective phenotype. Amplicon-based microbiota analysis of the fecal bacterial and fungal microbiota of D-1/2KO mice confirmed the absence of changes in the mycobiota but strong modification of the bacterial microbiota. We showed that bacteria from the Lachnospiraceae family were at least partly involved in this protection and that treatment with Blautia hansenii was enough to recapitulate the protection.
    Conclusions: Deletion of both the Dectin-1 and Dectin-2 receptors triggered a global shift in the microbial gut environment, affecting, surprisingly, mainly the bacterial population and driving protective effects in colitis. Members of the Lachnospiraceae family seem to play a central role in this protection. These findings provide new insights into the role of the Dectin receptors, which have been described to date as affecting only the fungal population, in intestinal physiopathology and in IBD. Video Abstract.
    MeSH term(s) Animals ; Bacteria/genetics ; Colitis ; Dextran Sulfate/adverse effects ; Disease Models, Animal ; Gastrointestinal Microbiome ; Inflammation ; Lectins, C-Type/metabolism ; Mice ; Mice, Inbred C57BL ; Mycobiome
    Chemical Substances Clec7a protein, mouse ; Lectins, C-Type ; dectin 1 ; dectin-2, mouse ; Dextran Sulfate (9042-14-2)
    Language English
    Publishing date 2022-06-14
    Publishing country England
    Document type Journal Article ; Video-Audio Media ; Research Support, Non-U.S. Gov't
    ZDB-ID 2697425-3
    ISSN 2049-2618 ; 2049-2618
    ISSN (online) 2049-2618
    ISSN 2049-2618
    DOI 10.1186/s40168-022-01273-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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