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  1. Article ; Online: Tracking Molecular Fragmentation in Electron-Ionization Mass Spectrometry with Ultrafast Time Resolution.

    Dantus, Marcos

    Accounts of chemical research

    2024  Volume 57, Issue 6, Page(s) 845–854

    Abstract: ConspectusMass spectrometry is a powerful analytical method capable of identifying compounds given a minute amount of material. The fragmentation pattern that results following molecular activation serves as a fingerprint that can be matched to a ... ...

    Abstract ConspectusMass spectrometry is a powerful analytical method capable of identifying compounds given a minute amount of material. The fragmentation pattern that results following molecular activation serves as a fingerprint that can be matched to a database compound for identification. Over the past half century, studies have addressed and, in many cases, named the chemical reactions that lead to some of the principal fragment ions. Theories have been developed to predict the observed fragmentation patterns, many of which assume that energy redistributes prior to dissociation. However, the existence of rearrangements and nonergodic processes complicates the prediction of fragmentation patterns and the identification of compounds that have yet to be entered into a curated database. To date, very few studies have addressed the time-dependent nature of the fragmentation of radical cations and, in particular, processes occurring with picosecond or shorter time scales where one expects to find nonergodic reactions.This Account focuses on a novel approach that enables tracking of molecular fragmentation in electron-ionization mass spectrometry with ultrafast time resolution. The two challenges that have prevented the time-resolved studies following electron ionization are the random impact parameter and moment of ionization of each molecule. In addition, medium-sized molecules can produce fragmentation patterns with tens if not hundreds of product ions. Spectroscopically interrogating all of these ions as a function of time is another major challenge. We describe strong field disruptive probing, a method that ionizes molecules on a femtosecond time scale and allows us to track in time the formation of all fragment ions simultaneously.Molecular fragmentation following ionization can occur on a very wide range of time scales. Metastable ions can survive from nanoseconds to microseconds; reactions that depend on vibrational energy redistribution can take picoseconds to nanoseconds; and direct dissociation processes and some rearrangements can take place in femtoseconds to picoseconds. All of these processes depend on the dynamics that occur during attoseconds and femtoseconds following the ionization process. Following a discussion of these time scales, we provide three examples of fragmentations that have been studied with femtosecond time resolution. Each of these examples include unforeseen reaction dynamics that involve a nonergodic process, highlighting the importance of time resolution in mass spectrometry. Finally, we explore future challenges and unresolved questions in mass spectrometry and, more broadly, in the domain of electron-initiated chemical reactions.
    Language English
    Publishing date 2024-02-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1483291-4
    ISSN 1520-4898 ; 0001-4842
    ISSN (online) 1520-4898
    ISSN 0001-4842
    DOI 10.1021/acs.accounts.3c00713
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  2. Article ; Online: Insights into ultrafast H

    Dantus, Marcos

    Nature chemistry

    2023  Volume 15, Issue 9, Page(s) 1202–1203

    Language English
    Publishing date 2023-08-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 2464596-5
    ISSN 1755-4349 ; 1755-4330
    ISSN (online) 1755-4349
    ISSN 1755-4330
    DOI 10.1038/s41557-023-01298-8
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  3. Article ; Online: Coherence mapping to identify the intermediates of multi-channel dissociative ionization.

    Stamm, Jacob / Kwon, Sung / Sandhu, Shawn / Sandhu, Jesse / Levine, Benjamin G / Dantus, Marcos

    Communications chemistry

    2024  Volume 7, Issue 1, Page(s) 103

    Abstract: Identifying the short-lived intermediates and reaction mechanisms of multi-channel radical cation fragmentation processes remains a current and important challenge to understanding and predicting mass spectra. We find that coherent oscillations in the ... ...

    Abstract Identifying the short-lived intermediates and reaction mechanisms of multi-channel radical cation fragmentation processes remains a current and important challenge to understanding and predicting mass spectra. We find that coherent oscillations in the femtosecond time-dependent yields of several product ions following ultrafast strong-field ionization represent spectroscopic signatures that elucidate their mechanism of formation and identify the intermediate(s) they originate from. Experiments on endo-dicyclopentadiene show that vibrational frequencies from various intermediates are mapped onto their resulting products. Aided by ab initio methods, we identify the vibrational modes of both the cleaved and intact molecular ion intermediates. These results confirm stepwise and concerted fragmentation pathways of the dicyclopentadiene ion. This study highlights the power of tracking the femtosecond dynamics of all product ions simultaneously and sheds further light onto one of the fundamental reaction mechanisms in mass spectrometry, the retro-Diels Alder reaction.
    Language English
    Publishing date 2024-05-09
    Publishing country England
    Document type Journal Article
    ZDB-ID 2929562-2
    ISSN 2399-3669 ; 2399-3669
    ISSN (online) 2399-3669
    ISSN 2399-3669
    DOI 10.1038/s42004-024-01176-5
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  4. Article ; Online: Ultrafast disruptive probing: Simultaneously keeping track of tens of reaction pathways.

    Jochim, Bethany / DeJesus, Lindsey / Dantus, Marcos

    The Review of scientific instruments

    2022  Volume 93, Issue 3, Page(s) 33003

    Abstract: Ultrafast science depends on different implementations of the well-known pump-probe method. Here, we provide a formal description of ultrafast disruptive probing, a method in which the probe pulse disrupts a transient species that may be a metastable ion ...

    Abstract Ultrafast science depends on different implementations of the well-known pump-probe method. Here, we provide a formal description of ultrafast disruptive probing, a method in which the probe pulse disrupts a transient species that may be a metastable ion or a transient state of matter. Disruptive probing has the advantage of allowing for simultaneous tracking of the yield of tens of different processes. Our presentation includes a numerical model and experimental data on multiple products resulting from the strong-field ionization of two different molecules, partially deuterated methanol and norbornene. The correlated enhancement and depletion signals between all the different fragmentation channels offer comprehensive information on photochemical reaction pathways. In combination with ion imaging and/or coincidence momentum imaging or as complementary to atom-specific probing or ultrafast diffraction methods, disruptive probing is a particularly powerful tool for the study of strong-field laser-matter interactions.
    MeSH term(s) Lasers
    Language English
    Publishing date 2022-04-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 209865-9
    ISSN 1089-7623 ; 0034-6748
    ISSN (online) 1089-7623
    ISSN 0034-6748
    DOI 10.1063/5.0084837
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  5. Article ; Online: Quantitative Identification of Nonpolar Perfluoroalkyl Substances by Mass Spectrometry.

    Stamm, Jacob / DeJesus, Lindsey / Jones, A Daniel / Dantus, Marcos

    The journal of physical chemistry. A

    2022  Volume 126, Issue 47, Page(s) 8851–8858

    Abstract: Identifying and quantifying mixtures of compounds with very similar fragmentation patterns in their mass spectra presents a unique and challenging problem. In particular, the mass spectra of most per- and poly-fluoroalkyl substances (PFAS) lack a ... ...

    Abstract Identifying and quantifying mixtures of compounds with very similar fragmentation patterns in their mass spectra presents a unique and challenging problem. In particular, the mass spectra of most per- and poly-fluoroalkyl substances (PFAS) lack a molecular ion. This complicates their identification, especially when using the absence of chromatographic separation. Here, we focus on linear, nonpolar, short-chain PFAS, which have received less attention than amphipathic PFAS despite their longer environmental lifetimes and greater global warming potentials. We identify and quantify
    MeSH term(s) Fluorocarbons/analysis ; Mass Spectrometry/methods ; Electrons ; Cations
    Chemical Substances Fluorocarbons ; Cations
    Language English
    Publishing date 2022-11-16
    Publishing country United States
    Document type Journal Article
    ISSN 1520-5215
    ISSN (online) 1520-5215
    DOI 10.1021/acs.jpca.2c05373
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Human Serum Albumin Dimerization Enhances the S

    Lahiri, Jurick / Sandhu, Shawn / Levine, Benjamin G / Dantus, Marcos

    The journal of physical chemistry letters

    2022  Volume 13, Issue 7, Page(s) 1825–1832

    Abstract: Cyanine molecules are important phototheranostic compounds given their high fluorescence yield in the near-infrared region of the spectrum. We report on the frequency and time-resolved spectroscopy of the ... ...

    Abstract Cyanine molecules are important phototheranostic compounds given their high fluorescence yield in the near-infrared region of the spectrum. We report on the frequency and time-resolved spectroscopy of the S
    MeSH term(s) Binding Sites ; Carbocyanines/chemistry ; Carbocyanines/metabolism ; Density Functional Theory ; Dimerization ; Humans ; Molecular Docking Simulation ; Protein Binding ; Serum Albumin, Human/chemistry ; Serum Albumin, Human/metabolism ; Spectrometry, Fluorescence ; Thermodynamics
    Chemical Substances Carbocyanines ; Serum Albumin, Human (ZIF514RVZR)
    Language English
    Publishing date 2022-02-16
    Publishing country United States
    Document type Journal Article
    ISSN 1948-7185
    ISSN (online) 1948-7185
    DOI 10.1021/acs.jpclett.1c03735
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  7. Article ; Online: Milliradian precision ultrafast pulse control for spectral phase metrology.

    Stamm, Jacob / Benel, Jorge / Escoto, Esmerando / Steinmeyer, Günter / Dantus, Marcos

    Optics express

    2021  Volume 29, Issue 10, Page(s) 14314–14325

    Abstract: A pulse-shaper-based method for spectral phase measurement and compression with milliradian precision is proposed and tested experimentally. Measurements of chirp and third-order dispersion are performed and compared to theoretical predictions. The ... ...

    Abstract A pulse-shaper-based method for spectral phase measurement and compression with milliradian precision is proposed and tested experimentally. Measurements of chirp and third-order dispersion are performed and compared to theoretical predictions. The single-digit milliradian accuracy is benchmarked by a group velocity dispersion measurement of fused silica.
    Language English
    Publishing date 2021-02-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1491859-6
    ISSN 1094-4087 ; 1094-4087
    ISSN (online) 1094-4087
    ISSN 1094-4087
    DOI 10.1364/OE.422739
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  8. Article ; Online: Femtosecond dynamics and coherence of ionic retro-Diels-Alder reactions.

    Li, Shuai / Jochim, Bethany / Jackson, James E / Dantus, Marcos

    The Journal of chemical physics

    2021  Volume 155, Issue 4, Page(s) 44303

    Abstract: Ultrafast tunnel ionization enables femtosecond time-resolved dynamic measurements of the retro-Diels-Alder reactions of positively charged cyclohexene, norbornene, and dicyclopentadiene. Unlike the reaction times of 500-600 ps that are observed ... ...

    Abstract Ultrafast tunnel ionization enables femtosecond time-resolved dynamic measurements of the retro-Diels-Alder reactions of positively charged cyclohexene, norbornene, and dicyclopentadiene. Unlike the reaction times of 500-600 ps that are observed following UV excitation of neutral species, on the ionic potential energy surfaces, these reactions occur on a single picosecond timescale and, in some cases, exhibit vibrational coherence. In the case of norbornene, a 270 cm
    Language English
    Publishing date 2021-08-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0048380
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  9. Article ; Online: What is the Mechanism of H

    Kwon, Sung / Sandhu, Shawn / Shaik, Moaid / Stamm, Jacob / Sandhu, Jesse / Das, Rituparna / Hetherington, Caitlin V / Levine, Benjamin G / Dantus, Marcos

    The journal of physical chemistry. A

    2023  Volume 127, Issue 41, Page(s) 8633–8638

    Abstract: We examine the possibility that three hydrogen atoms in one plane of the cyclopropane dication come together in a concerted "ring-closing" mechanism to form ... ...

    Abstract We examine the possibility that three hydrogen atoms in one plane of the cyclopropane dication come together in a concerted "ring-closing" mechanism to form H
    Language English
    Publishing date 2023-10-09
    Publishing country United States
    Document type Journal Article
    ISSN 1520-5215
    ISSN (online) 1520-5215
    DOI 10.1021/acs.jpca.3c05442
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  10. Article ; Online: Initial-site characterization of hydrogen migration following strong-field double-ionization of ethanol.

    Severt, Travis / Weckwerth, Eleanor / Kaderiya, Balram / Feizollah, Peyman / Jochim, Bethany / Borne, Kurtis / Ziaee, Farzaneh / P, Kanaka Raju / Carnes, Kevin D / Dantus, Marcos / Rolles, Daniel / Rudenko, Artem / Wells, Eric / Ben-Itzhak, Itzik

    Nature communications

    2024  Volume 15, Issue 1, Page(s) 74

    Abstract: An essential problem in photochemistry is understanding the coupling of electronic and nuclear dynamics in molecules, which manifests in processes such as hydrogen migration. Measurements of hydrogen migration in molecules that have more than two ... ...

    Abstract An essential problem in photochemistry is understanding the coupling of electronic and nuclear dynamics in molecules, which manifests in processes such as hydrogen migration. Measurements of hydrogen migration in molecules that have more than two equivalent hydrogen sites, however, produce data that is difficult to compare with calculations because the initial hydrogen site is unknown. We demonstrate that coincidence ion-imaging measurements of a few deuterium-tagged isotopologues of ethanol can determine the contribution of each initial-site composition to hydrogen-rich fragments following strong-field double ionization. These site-specific probabilities produce benchmarks for calculations and answer outstanding questions about photofragmentation of ethanol dications; e.g., establishing that the central two hydrogen atoms are 15 times more likely to abstract the hydroxyl proton than a methyl-group proton to form H[Formula: see text] and that hydrogen scrambling, involving the exchange of hydrogen between different sites, is important in H
    Language English
    Publishing date 2024-01-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-44311-x
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