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  1. Article ; Online: The RNA binding proteins ZFP36L1 and ZFP36L2 are dysregulated in airway epithelium in human and a murine model of asthma

    Jennifer Rynne / Elena Ortiz-Zapater / Dustin C. Bagley / Onofrio Zanin / George Doherty / Varsha Kanabar / Jon Ward / David J. Jackson / Maddy Parsons / Jody Rosenblatt / Ian M. Adcock / Rocio T. Martinez-Nunez

    Frontiers in Cell and Developmental Biology, Vol

    2023  Volume 11

    Abstract: Introduction: Asthma is the most common chronic inflammatory disease of the airways. The airway epithelium is a key driver of the disease, and numerous studies have established genome-wide differences in mRNA expression between health and asthma. However, ...

    Abstract Introduction: Asthma is the most common chronic inflammatory disease of the airways. The airway epithelium is a key driver of the disease, and numerous studies have established genome-wide differences in mRNA expression between health and asthma. However, the underlying molecular mechanisms for such differences remain poorly understood. The human TTP family is comprised of ZFP36, ZFP36L1 and ZFP36L2, and has essential roles in immune regulation by determining the stability and translation of myriad mRNAs encoding for inflammatory mediators. We investigated the expression and possible role of the tristetraprolin (TTP) family of RNA binding proteins (RBPs), poorly understood in asthma.Methods: We analysed the levels of ZFP36, ZFP36L1 and ZFP36L2 mRNA in several publicly available asthma datasets, including single cell RNA-sequencing. We also interrogated the expression of known targets of these RBPs in asthma. We assessed the lung mRNA expression and cellular localization of Zfp36l1 and Zfp36l2 in precision cut lung slices in murine asthma models. Finally, we determined the expression in airway epithelium of ZFP36L1 and ZFP36L2 in human bronchial biopsies and performed rescue experiments in primary bronchial epithelium from patients with severe asthma.Results: We found ZFP36L1 and ZFP36L2 mRNA levels significantly downregulated in the airway epithelium of patients with very severe asthma in different cohorts (5 healthy vs. 8 severe asthma; 36 moderate asthma vs. 37 severe asthma on inhaled steroids vs. 26 severe asthma on oral corticoids). Integrating several datasets allowed us to infer that mRNAs potentially targeted by these RBPs are increased in severe asthma. Zfp36l1 was downregulated in the lung of a mouse model of asthma, and immunostaining of ex vivo lung slices with a dual antibody demonstrated that Zfp36l1/l2 nuclear localization was increased in the airway epithelium of an acute asthma mouse model, which was further enhanced in a chronic model. Immunostaining of human bronchial biopsies showed that ...
    Keywords airway and lung cell biology ; RNA binding protein ; asthma ; post-transcriptional control ; tristetraprolin ; ZFP36L1 ; Biology (General) ; QH301-705.5
    Subject code 610
    Language English
    Publishing date 2023-10-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Recommendations following a modified UK-Delphi consensus study on best practice for referral and management of severe asthma

    Claire Butler / Rekha Chaudhuri / Robert Niven / James Calvert / David J Jackson / Katie Pink / Samantha Prigmore / Charlotte Renwick

    BMJ Open Respiratory Research, Vol 8, Iss

    2021  Volume 1

    Keywords Medicine ; R ; Diseases of the respiratory system ; RC705-779
    Language English
    Publishing date 2021-09-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: An examination of factorial invariance of the Asthma Control Questionnaire among adults with severe asthma

    Ronald McDowell / Liam Heaney / Thomas Brown / Brendan Bunting / Hassan Burhan / Rekha Chaudhuri / Paddy Dennison / Shoaib Faruqi / Robin Gore / David J. Jackson / Andrew Menzies-Gow / Thomas Pantin / Mitesh Patel / Paul Pfeffer / Salman Siddiqui / John Busby

    PLoS ONE, Vol 18, Iss

    2023  Volume 12

    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2023-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Inflammatory and microbiological associations with near-fatal asthma requiring extracorporeal membrane oxygenation

    Sunil Patel / Neeraj M. Shah / Akanksha M. Malhotra / Christopher Lockie / Luigi Camporota / Nicholas Barrett / Brian D. Kent / David J. Jackson

    ERJ Open Research, Vol 6, Iss

    2020  Volume 1

    Keywords Medicine ; R
    Language English
    Publishing date 2020-01-01T00:00:00Z
    Publisher European Respiratory Society
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Steroid-sparing effects of benralizumab in patients with eosinophilic granulomatosis with polyangiitis

    Alexandra M. Nanzer / Jaideep Dhariwal / Joanne Kavanagh / Andrew Hearn / Mariana Fernandes / Louise Thomson / Cris Roxas / Linda Green / Grainne D'Ancona / Sangita Agarwal / Brian D. Kent / David J. Jackson

    ERJ Open Research, Vol 6, Iss

    2020  Volume 4

    Keywords Medicine ; R
    Language English
    Publishing date 2020-11-01T00:00:00Z
    Publisher European Respiratory Society
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: M1-like macrophages are potent producers of anti-viral interferons and M1-associated marker-positive lung macrophages are decreased during rhinovirus-induced asthma exacerbations

    Alexandra Nikonova / Musa Khaitov / David J. Jackson / Stephanie Traub / Maria-Belen Trujillo-Torralbo / Dmitriy A. Kudlay / Anton S. Dvornikov / Ajerico del-Rosario / Rudolf Valenta / Luminita A. Stanciu / Rahim Khaitov / Sebastian L. Johnston

    EBioMedicine, Vol 54, Iss , Pp - (2020)

    2020  

    Abstract: Background: Macrophages (Mф) can be M1/M2 polarized by Th1/2 signals, respectively. M2-like Mф are thought to be important in asthma pathogenesis, and M1-like in anti-infective immunity, however their roles in virus-induced asthma exacerbations are ... ...

    Abstract Background: Macrophages (Mф) can be M1/M2 polarized by Th1/2 signals, respectively. M2-like Mф are thought to be important in asthma pathogenesis, and M1-like in anti-infective immunity, however their roles in virus-induced asthma exacerbations are unknown. Our objectives were (i) to assess polarised Mф phenotype responses to rhinovirus (RV) infection in vitro and (ii) to assess Mф phenotypes in healthy subjects and people with asthma before and during experimental RV infection in vivo. Methods: We investigated characteristics of polarized/unpolarized human monocyte-derived Mф (MDM, from 3–6 independent donors) in vitro and evaluated frequencies of M1/M2-like bronchoalveolar lavage (BAL) Mф in experimental RV-induced asthma exacerbation in 7 healthy controls and 17 (at baseline) and 18 (at day 4 post infection) people with asthma. Findings: We observed in vitro: M1-like but not M2-like or unpolarized MDM are potent producers of type I and III interferons in response to RV infection (P<0.0001), and M1-like are more resistant to RV infection (P<0.05); compared to M1-like, M2-like MDM constitutively produced higher levels of CCL22/MDC (P = 0.007) and CCL17/TARC (P<0.0001); RV-infected M1-like MDM were characterized as CD14+CD80+CD197+ (P = 0.002 vs M2-like, P<0.0001 vs unpolarized MDM). In vivo we found reduced percentages of M1-like CD14+CD80+CD197+ BAL Mф in asthma during experimental RV16 infection compared to baseline (P = 0.024). Interpretation: Human M1-like BAL Mф are likely important contributors to anti-viral immunity and their numbers are reduced in patients with allergic asthma during RV-induced asthma exacerbations. This mechanism may be one explanation why RV-triggered clinical and pathologic outcomes are more severe in allergic patients than in healthy subjects. Funding: ERC FP7 Advanced grant 233015, MRC Centre Grant G1000758, Asthma UK grant 08–048, NIHR Biomedical Research Centre funding scheme, NIHR BRC Centre grant P26095, the Predicta FP7 Collaborative Project grant 260895, RSF grant ...
    Keywords Medicine ; R ; Medicine (General) ; R5-920
    Subject code 610
    Language English
    Publishing date 2020-04-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Oral corticosteroid-sparing effects of reslizumab in the treatment of eosinophilic granulomatosis with polyangiitis

    Brian D. Kent / Grainne d'Ancona / Mariana Fernandes / Linda Green / Cris Roxas / Louise Thomson / Alexandra M. Nanzer / Joanne Kavanagh / Sangita Agarwal / David J. Jackson

    ERJ Open Research, Vol 6, Iss

    2020  Volume 1

    Keywords Medicine ; R
    Language English
    Publishing date 2020-01-01T00:00:00Z
    Publisher European Respiratory Society
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article: Genomic Analysis of Carbapenemase-Producing Extensively Drug-Resistant Klebsiella pneumoniae Isolates Reveals the Horizontal Spread of p18-43_01 Plasmid Encoding blaNDM-1 in South Africa

    Ramsamy, Yogandree / Mlisana, Koleka P. / Allam, Mushal / Amoako, Daniel G. / Abia, Akebe L. K. / Ismail, Arshad / Singh, Ravesh / Kisten, Theroshnie / Swe Han, Khine Swe / Muckart, David J. Jackson / Hardcastle, Timothy / Suleman, Moosa / Essack, Sabiha Y.

    Microorganisms. 2020 Jan. 17, v. 8, no. 1

    2020  

    Abstract: Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug-resistant Klebsiella pneumoniae strains, focusing on the carbapenem resistance-encoding determinants, mobile genetic support, clonal and ... ...

    Abstract Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug-resistant Klebsiella pneumoniae strains, focusing on the carbapenem resistance-encoding determinants, mobile genetic support, clonal and epidemiological relationships. A total of ten isolates were obtained from patients admitted to the intensive care unit (ICU) in a public hospital in South Africa. Five isolates were from rectal swabs of colonized patients and five from blood cultures of patients with invasive carbapenem-resistant infections. Following microbial identification and antibiotic susceptibility tests, the isolates were subjected to WGS on the Illumina MiSeq platform. All the isolates showed genotypic resistance to tested β-lactams (NDM-1, OXA-1, CTX-M-15, TEM-1B, SHV-1) and other antibiotics. All but one isolate belonged to the ST152 with a novel sequence type, ST3136, differing by a single-locus variant. The isolates had the same plasmid multilocus sequence type (IncF[K12:A-:B36]) and capsular serotype (KL149), supporting the epidemiological linkage between the clones. Resistance to carbapenems in the 10 isolates was conferred by the blaNDM₋₁ mediated by the acquisition of multi-replicon [ColRNAI, IncFIB(pB171), Col440I, IncFII, IncFIB(K) and IncFII(Yp)] p18-43_01 plasmid. These findings suggest that the acquisition of blaNDM₋₁-bearing plasmid structure (p18-43_01), horizontal transfer and clonal dissemination facilitate the spread of carbapenemases in South Africa. This emphasizes the importance of targeted infection control measures to prevent dissemination.
    Keywords Klebsiella pneumoniae ; antibiotic resistance ; beta-lactamase ; blood ; carbapenems ; disease control ; epidemiology ; genomics ; hospitals ; multilocus sequence typing ; plasmids ; serotypes ; South Africa
    Language English
    Dates of publication 2020-0117
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8010137
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Genomic Analysis of Carbapenemase-Producing Extensively Drug-Resistant Klebsiella pneumoniae Isolates Reveals the Horizontal Spread of p18-43_01 Plasmid Encoding bla NDM-1 in South Africa

    Yogandree Ramsamy / Koleka P. Mlisana / Mushal Allam / Daniel G. Amoako / Akebe L. K. Abia / Arshad Ismail / Ravesh Singh / Theroshnie Kisten / Khine Swe Swe Han / David J. Jackson Muckart / Timothy Hardcastle / Moosa Suleman / Sabiha Y. Essack

    Microorganisms, Vol 8, Iss 1, p

    2020  Volume 137

    Abstract: Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug-resistant Klebsiella pneumoniae strains, focusing on the carbapenem resistance-encoding determinants, mobile genetic support, clonal and ... ...

    Abstract Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug-resistant Klebsiella pneumoniae strains, focusing on the carbapenem resistance-encoding determinants, mobile genetic support, clonal and epidemiological relationships. A total of ten isolates were obtained from patients admitted to the intensive care unit (ICU) in a public hospital in South Africa. Five isolates were from rectal swabs of colonized patients and five from blood cultures of patients with invasive carbapenem-resistant infections. Following microbial identification and antibiotic susceptibility tests, the isolates were subjected to WGS on the Illumina MiSeq platform. All the isolates showed genotypic resistance to tested β-lactams (NDM-1, OXA-1, CTX-M-15, TEM-1B, SHV-1) and other antibiotics. All but one isolate belonged to the ST152 with a novel sequence type, ST3136, differing by a single-locus variant. The isolates had the same plasmid multilocus sequence type (IncF[K12:A-:B36]) and capsular serotype ( KL149 ), supporting the epidemiological linkage between the clones. Resistance to carbapenems in the 10 isolates was conferred by the bla NDM-1 mediated by the acquisition of multi-replicon [ColRNAI, IncFIB(pB171), Col440I, IncFII, IncFIB(K) and IncFII(Yp)] p18-43_01 plasmid. These findings suggest that the acquisition of bla NDM-1 -bearing plasmid structure (p18-43_01), horizontal transfer and clonal dissemination facilitate the spread of carbapenemases in South Africa. This emphasizes the importance of targeted infection control measures to prevent dissemination.
    Keywords genomics ; carbapenemase ; klebsiella pneumoniae ; extensively drug-resistant ; mobile genetic elements ; epidemiology ; phylogenomic ; south africa ; Biology (General) ; QH301-705.5
    Subject code 580
    Language English
    Publishing date 2020-01-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Genomic Analysis of Carbapenemase

    Ramsamy, Yogandree / Mlisana, Koleka P / Allam, Mushal / Amoako, Daniel G / Abia, Akebe L K / Ismail, Arshad / Singh, Ravesh / Kisten, Theroshnie / Han, Khine Swe / Muckart, David J Jackson / Hardcastle, Timothy / Suleman, Moosa / Essack, Sabiha Y

    Microorganisms

    2020  Volume 8, Issue 1

    Abstract: Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug- ... ...

    Abstract Whole-genome sequence (WGS) analyses were employed to investigate the genomic epidemiology of extensively drug-resistant
    Language English
    Publishing date 2020-01-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms8010137
    Database MEDical Literature Analysis and Retrieval System OnLINE

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