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  1. Article: (with research data) Digital photography provides a fast, reliable, and noninvasive method to estimate anthocyanin pigment concentration in reproductive and vegetative plant tissues.

    Del Valle, José C / Gallardo-López, Antonio / Buide, Mª Luisa / Whittall, Justen B / Narbona, Eduardo

    Ecology and evolution

    2018  Volume 8, Issue 6, Page(s) 3064–3076

    Abstract: Anthocyanin pigments have become a model trait for evolutionary ecology as they often provide adaptive benefits for plants. Anthocyanins have been traditionally quantified biochemically or more recently using spectral reflectance. However, both methods ... ...

    Abstract Anthocyanin pigments have become a model trait for evolutionary ecology as they often provide adaptive benefits for plants. Anthocyanins have been traditionally quantified biochemically or more recently using spectral reflectance. However, both methods require destructive sampling and can be labor intensive and challenging with small samples. Recent advances in digital photography and image processing make it the method of choice for measuring color in the wild. Here, we use digital images as a quick, noninvasive method to estimate relative anthocyanin concentrations in species exhibiting color variation. Using a consumer-level digital camera and a free image processing toolbox, we extracted RGB values from digital images to generate color indices. We tested petals, stems, pedicels, and calyces of six species, which contain different types of anthocyanin pigments and exhibit different pigmentation patterns. Color indices were assessed by their correlation to biochemically determined anthocyanin concentrations. For comparison, we also calculated color indices from spectral reflectance and tested the correlation with anthocyanin concentration. Indices perform differently depending on the nature of the color variation. For both digital images and spectral reflectance, the most accurate estimates of anthocyanin concentration emerge from anthocyanin content-chroma ratio, anthocyanin content-chroma basic, and strength of green indices. Color indices derived from both digital images and spectral reflectance strongly correlate with biochemically determined anthocyanin concentration; however, the estimates from digital images performed better than spectral reflectance in terms of
    Language English
    Publishing date 2018-02-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2635675-2
    ISSN 2045-7758
    ISSN 2045-7758
    DOI 10.1002/ece3.3804
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Transcriptome and Biochemical Analysis of a Flower Color Polymorphism in Silene littorea (Caryophyllaceae).

    Casimiro-Soriguer, Inés / Narbona, Eduardo / Buide, M L / Del Valle, José C / Whittall, Justen B

    Frontiers in plant science

    2016  Volume 7, Page(s) 204

    Abstract: Flower color polymorphisms are widely used as model traits from genetics to ecology, yet determining the biochemical and molecular basis can be challenging. Anthocyanin-based flower color variations can be caused by at least 12 structural and three ... ...

    Abstract Flower color polymorphisms are widely used as model traits from genetics to ecology, yet determining the biochemical and molecular basis can be challenging. Anthocyanin-based flower color variations can be caused by at least 12 structural and three regulatory genes in the anthocyanin biosynthetic pathway (ABP). We use mRNA-Seq to simultaneously sequence and estimate expression of these candidate genes in nine samples of Silene littorea representing three color morphs (dark pink, light pink and white) across three developmental stages in hopes of identifying the cause of flower color variation. We identified 29 putative paralogs for the 15 candidate genes in the ABP. We assembled complete coding sequences for 16 structural loci and nine of ten regulatory loci. Among these 29 putative paralogs, we identified 622 SNPs, yet only nine synonymous SNPs in Ans had allele frequencies that differentiated pigmented petals (dark pink and light pink) from white petals. These Ans allele frequency differences were further investigated with an expanded sequencing survey of 38 individuals, yet no SNPs consistently differentiated the color morphs. We also found one locus, F3h1, with strong differential expression between pigmented and white samples (>42x). This may be caused by decreased expression of Myb1a in white petal buds. Myb1a in S. littorea is a regulatory locus closely related to Subgroup 7 Mybs known to regulate F3h and other loci in the first half of the ABP in model species. We then compare the mRNA-Seq results with petal biochemistry which revealed cyanidin as the primary anthocyanin and five flavonoid intermediates. Concentrations of three of the flavonoid intermediates were significantly lower in white petals than in pigmented petals (rutin, quercetin and isovitexin). The biochemistry results for rutin, quercetin, luteolin and apigenin are consistent with the transcriptome results suggesting a blockage at F3h, possibly caused by downregulation of Myb1a.
    Language English
    Publishing date 2016-02-29
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2016.00204
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: On flavonoid accumulation in different plant parts: variation patterns among individuals and populations in the shore campion (Silene littorea).

    Del Valle, José C / Buide, Ma L / Casimiro-Soriguer, Inés / Whittall, Justen B / Narbona, Eduardo

    Frontiers in plant science

    2015  Volume 6, Page(s) 939

    Abstract: The presence of anthocyanins in flowers and fruits is frequently attributed to attracting pollinators and dispersers. In vegetative organs, anthocyanins and other non-pigmented flavonoids such as flavones and flavonols may serve protective functions ... ...

    Abstract The presence of anthocyanins in flowers and fruits is frequently attributed to attracting pollinators and dispersers. In vegetative organs, anthocyanins and other non-pigmented flavonoids such as flavones and flavonols may serve protective functions against UV radiation, cold, heat, drought, salinity, pathogens, and herbivores; thus, these compounds are usually produced as a plastic response to such stressors. Although, the independent accumulation of anthocyanins in reproductive and vegetative tissues is commonly postulated due to differential regulation, the accumulation of flavonoids within and among populations has never been thoroughly compared. Here, we investigated the shore campion (Silene littorea, Caryophyllaceae) which exhibits variation in anthocyanin accumulation in its floral and vegetative tissues. We examined the in-situ accumulation of flavonoids in floral (petals and calyxes) and vegetative organs (leaves) from 18 populations representing the species' geographic distribution. Each organ exhibited considerable variability in the content of anthocyanins and other flavonoids both within and among populations. In all organs, anthocyanin and other flavonoids were correlated. At the plant level, the flavonoid content in petals, calyxes, and leaves was not correlated in most of the populations. However, at the population level, the mean amount of anthocyanins in all organs was positively correlated, which suggests that the variable environmental conditions of populations may play a role in anthocyanin accumulation. These results are unexpected because the anthocyanins are usually constitutive in petals, yet contingent to environmental conditions in calyxes and leaves. Anthocyanin variation in petals may influence pollinator attraction and subsequent plant reproduction, yet the amount of anthocyanins may be a direct response to environmental factors. In populations on the west coast, a general pattern of increasing accumulation of flavonoids toward southern latitudes was observed in calyxes and leaves. This pattern corresponds to a gradual increase of UV-B radiation and temperature, and a decrease of rainfall toward the south. However, populations along the southern coast exposed to similar climatic stressors showed highly variable flavonoid contents, implying that other factors may play a role in flavonoid accumulation.
    Language English
    Publishing date 2015-10-29
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2015.00939
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Phylogenomics and the rise of the angiosperms.

    Zuntini, Alexandre R / Carruthers, Tom / Maurin, Olivier / Bailey, Paul C / Leempoel, Kevin / Brewer, Grace E / Epitawalage, Niroshini / Françoso, Elaine / Gallego-Paramo, Berta / McGinnie, Catherine / Negrão, Raquel / Roy, Shyamali R / Simpson, Lalita / Toledo Romero, Eduardo / Barber, Vanessa M A / Botigué, Laura / Clarkson, James J / Cowan, Robyn S / Dodsworth, Steven /
    Johnson, Matthew G / Kim, Jan T / Pokorny, Lisa / Wickett, Norman J / Antar, Guilherme M / DeBolt, Lucinda / Gutierrez, Karime / Hendriks, Kasper P / Hoewener, Alina / Hu, Ai-Qun / Joyce, Elizabeth M / Kikuchi, Izai A B S / Larridon, Isabel / Larson, Drew A / de Lírio, Elton John / Liu, Jing-Xia / Malakasi, Panagiota / Przelomska, Natalia A S / Shah, Toral / Viruel, Juan / Allnutt, Theodore R / Ameka, Gabriel K / Andrew, Rose L / Appelhans, Marc S / Arista, Montserrat / Ariza, María Jesús / Arroyo, Juan / Arthan, Watchara / Bachelier, Julien B / Bailey, C Donovan / Barnes, Helen F / Barrett, Matthew D / Barrett, Russell L / Bayer, Randall J / Bayly, Michael J / Biffin, Ed / Biggs, Nicky / Birch, Joanne L / Bogarín, Diego / Borosova, Renata / Bowles, Alexander M C / Boyce, Peter C / Bramley, Gemma L C / Briggs, Marie / Broadhurst, Linda / Brown, Gillian K / Bruhl, Jeremy J / Bruneau, Anne / Buerki, Sven / Burns, Edie / Byrne, Margaret / Cable, Stuart / Calladine, Ainsley / Callmander, Martin W / Cano, Ángela / Cantrill, David J / Cardinal-McTeague, Warren M / Carlsen, Mónica M / Carruthers, Abigail J A / de Castro Mateo, Alejandra / Chase, Mark W / Chatrou, Lars W / Cheek, Martin / Chen, Shilin / Christenhusz, Maarten J M / Christin, Pascal-Antoine / Clements, Mark A / Coffey, Skye C / Conran, John G / Cornejo, Xavier / Couvreur, Thomas L P / Cowie, Ian D / Csiba, Laszlo / Darbyshire, Iain / Davidse, Gerrit / Davies, Nina M J / Davis, Aaron P / van Dijk, Kor-Jent / Downie, Stephen R / Duretto, Marco F / Duvall, Melvin R / Edwards, Sara L / Eggli, Urs / Erkens, Roy H J / Escudero, Marcial / de la Estrella, Manuel / Fabriani, Federico / Fay, Michael F / Ferreira, Paola de L / Ficinski, Sarah Z / Fowler, Rachael M / Frisby, Sue / Fu, Lin / Fulcher, Tim / Galbany-Casals, Mercè / Gardner, Elliot M / German, Dmitry A / Giaretta, Augusto / Gibernau, Marc / Gillespie, Lynn J / González, Cynthia C / Goyder, David J / Graham, Sean W / Grall, Aurélie / Green, Laura / Gunn, Bee F / Gutiérrez, Diego G / Hackel, Jan / Haevermans, Thomas / Haigh, Anna / Hall, Jocelyn C / Hall, Tony / Harrison, Melissa J / Hatt, Sebastian A / Hidalgo, Oriane / Hodkinson, Trevor R / Holmes, Gareth D / Hopkins, Helen C F / Jackson, Christopher J / James, Shelley A / Jobson, Richard W / Kadereit, Gudrun / Kahandawala, Imalka M / Kainulainen, Kent / Kato, Masahiro / Kellogg, Elizabeth A / King, Graham J / Klejevskaja, Beata / Klitgaard, Bente B / Klopper, Ronell R / Knapp, Sandra / Koch, Marcus A / Leebens-Mack, James H / Lens, Frederic / Leon, Christine J / Léveillé-Bourret, Étienne / Lewis, Gwilym P / Li, De-Zhu / Li, Lan / Liede-Schumann, Sigrid / Livshultz, Tatyana / Lorence, David / Lu, Meng / Lu-Irving, Patricia / Luber, Jaquelini / Lucas, Eve J / Luján, Manuel / Lum, Mabel / Macfarlane, Terry D / Magdalena, Carlos / Mansano, Vidal F / Masters, Lizo E / Mayo, Simon J / McColl, Kristina / McDonnell, Angela J / McDougall, Andrew E / McLay, Todd G B / McPherson, Hannah / Meneses, Rosa I / Merckx, Vincent S F T / Michelangeli, Fabián A / Mitchell, John D / Monro, Alexandre K / Moore, Michael J / Mueller, Taryn L / Mummenhoff, Klaus / Munzinger, Jérôme / Muriel, Priscilla / Murphy, Daniel J / Nargar, Katharina / Nauheimer, Lars / Nge, Francis J / Nyffeler, Reto / Orejuela, Andrés / Ortiz, Edgardo M / Palazzesi, Luis / Peixoto, Ariane Luna / Pell, Susan K / Pellicer, Jaume / Penneys, Darin S / Perez-Escobar, Oscar A / Persson, Claes / Pignal, Marc / Pillon, Yohan / Pirani, José R / Plunkett, Gregory M / Powell, Robyn F / Prance, Ghillean T / Puglisi, Carmen / Qin, Ming / Rabeler, Richard K / Rees, Paul E J / Renner, Matthew / Roalson, Eric H / Rodda, Michele / Rogers, Zachary S / Rokni, Saba / Rutishauser, Rolf / de Salas, Miguel F / Schaefer, Hanno / Schley, Rowan J / Schmidt-Lebuhn, Alexander / Shapcott, Alison / Al-Shehbaz, Ihsan / Shepherd, Kelly A / Simmons, Mark P / Simões, André O / Simões, Ana Rita G / Siros, Michelle / Smidt, Eric C / Smith, James F / Snow, Neil / Soltis, Douglas E / Soltis, Pamela S / Soreng, Robert J / Sothers, Cynthia A / Starr, Julian R / Stevens, Peter F / Straub, Shannon C K / Struwe, Lena / Taylor, Jennifer M / Telford, Ian R H / Thornhill, Andrew H / Tooth, Ifeanna / Trias-Blasi, Anna / Udovicic, Frank / Utteridge, Timothy M A / Del Valle, Jose C / Verboom, G Anthony / Vonow, Helen P / Vorontsova, Maria S / de Vos, Jurriaan M / Al-Wattar, Noor / Waycott, Michelle / Welker, Cassiano A D / White, Adam J / Wieringa, Jan J / Williamson, Luis T / Wilson, Trevor C / Wong, Sin Yeng / Woods, Lisa A / Woods, Roseina / Worboys, Stuart / Xanthos, Martin / Yang, Ya / Zhang, Yu-Xiao / Zhou, Meng-Yuan / Zmarzty, Sue / Zuloaga, Fernando O / Antonelli, Alexandre / Bellot, Sidonie / Crayn, Darren M / Grace, Olwen M / Kersey, Paul J / Leitch, Ilia J / Sauquet, Hervé / Smith, Stephen A / Eiserhardt, Wolf L / Forest, Félix / Baker, William J

    Nature

    2024  

    Abstract: Angiosperms are the cornerstone of most terrestrial ecosystems and human ... ...

    Abstract Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods
    Language English
    Publishing date 2024-04-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-024-07324-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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