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  1. Article ; Online: Federal Impacts on Buprenorphine Prescribing in Washington State, 2012 to 2022.

    Xiong, Fan / Jetson, Jillian / Park, Cheolwoo / Delcher, Chris

    American journal of public health

    2024  , Page(s) e1–e9

    Abstract: Objectives. ...

    Abstract Objectives.
    Language English
    Publishing date 2024-05-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 121100-6
    ISSN 1541-0048 ; 0090-0036 ; 0002-9572
    ISSN (online) 1541-0048
    ISSN 0090-0036 ; 0002-9572
    DOI 10.2105/AJPH.2024.307649
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Xylazine-involved fatal overdoses and localized geographic clustering: Cook County, IL, 2019-2022.

    Delcher, Chris / Anthony, Nicholas / Mir, Mojde

    Drug and alcohol dependence

    2023  Volume 249, Page(s) 110833

    Abstract: Background: Xylazine, a veterinary analgesic sedative, is circulating in the illicit drug markets of at least 23 states including Illinois. We conducted a geographic analysis to better identify the spatial distribution of xylazine-involved fatal ... ...

    Abstract Background: Xylazine, a veterinary analgesic sedative, is circulating in the illicit drug markets of at least 23 states including Illinois. We conducted a geographic analysis to better identify the spatial distribution of xylazine-involved fatal overdoses in Cook County, IL.
    Methods: Cook County Medical Examiner Office's (CCMEO) publicly available data was used to identify xylazine-involved fatal overdoses from January 1, 2019, to June 30, 2022. Xylazine-positive (cases) to xylazine-negative groups with drug mixtures involving fentanyl, alcohol and stimulants (controls) were matched on age, race, sex, and year of death. Ripley's K-function was used to examine the likelihood of case clustering compared to controls with the Bernoulli spatial scan deployed to identify specific geographic clusters.
    Results: Almost all (94.4%) xylazine-positive overdoses contained fentanyl. Using coordinate-based matching, we found that approximately 3% of xylazine overdose incidents were co-located with other overdoses. Xylazine cases clustered to from 0 to 16.1 miles (max=10.6 miles). Results of the Bernoulli spatial scan varied by control group with two high-risk clusters found relative to alcohol and stimulants and a low-risk cluster relative to fentanyl. Differences in co-occurring drugs were found between xylazine and fentanyl groups like the absolute number of drugs (4.6v 3.4, p<0.0001) and fentanyl analog types.
    Conclusions: Xylazine fatal overdose incident locations exhibited localized clustering relative to fentanyl overdoses but clusters were not precisely detected at these scales. Even so, our results, especially relative to repeat overdose micro "hot spots", offer insight on targeting harm reduction and other services at the neighborhood-level.
    MeSH term(s) Humans ; Xylazine/therapeutic use ; Drug Overdose/epidemiology ; Drug Overdose/drug therapy ; Fentanyl ; Analgesics/therapeutic use ; Illinois ; Analgesics, Opioid/therapeutic use
    Chemical Substances Xylazine (2KFG9TP5V8) ; Fentanyl (UF599785JZ) ; Analgesics ; Analgesics, Opioid
    Language English
    Publishing date 2023-06-16
    Publishing country Ireland
    Document type Journal Article ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 519918-9
    ISSN 1879-0046 ; 0376-8716
    ISSN (online) 1879-0046
    ISSN 0376-8716
    DOI 10.1016/j.drugalcdep.2023.110833
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: geoPIPE: Geospatial Pipeline for Enhancing Open Data for Substance Use Disorders Research.

    Harris, Daniel R / Anthony, Nick / Mir, Mojde / Delcher, Chris

    AMIA ... Annual Symposium proceedings. AMIA Symposium

    2023  Volume 2022, Page(s) 522–531

    Abstract: We present our open-source pipeline for quickly enhancing open data sets with research-focused expansions and show its effectiveness on a cornerstone open data set released by the Cook County government in Illinois. The City of Chicago and Cook County ... ...

    Abstract We present our open-source pipeline for quickly enhancing open data sets with research-focused expansions and show its effectiveness on a cornerstone open data set released by the Cook County government in Illinois. The City of Chicago and Cook County were both early adopters of open data portals and have made a wide variety of data available to the public; we focus on the medical examiner case archive which provides information about deaths recorded by Cook County's Office of the Medical Examiner, including overdoses invaluable to substance use disorder research. Our pipeline derives key variables from open data and links to other publicly available data sets in support of accelerating translational research on substance use disorders. Our methods apply to location-based analyses of overdoses in general and, as an example, we highlight their impact on opioid research. We provide our pipeline as open-source software to act as open infrastructure for open data to help fill the gap between data release and data use.
    MeSH term(s) Humans ; Substance-Related Disorders ; Analgesics, Opioid ; Drug Overdose ; Illinois
    Chemical Substances Analgesics, Opioid
    Language English
    Publishing date 2023-04-29
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, P.H.S.
    ISSN 1942-597X
    ISSN (online) 1942-597X
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Evidence of housing instability identified by addresses, clinical notes, and diagnostic codes in a real-world population with substance use disorders.

    Harris, Daniel R / Anthony, Nicholas / Quesinberry, Dana / Delcher, Chris

    Journal of clinical and translational science

    2023  Volume 7, Issue 1, Page(s) e196

    Abstract: Introduction: Housing instability is a social determinant of health associated with multiple negative health outcomes including substance use disorders (SUDs). Real-world evidence of housing instability is needed to improve translational research on ... ...

    Abstract Introduction: Housing instability is a social determinant of health associated with multiple negative health outcomes including substance use disorders (SUDs). Real-world evidence of housing instability is needed to improve translational research on populations with SUDs.
    Methods: We identified evidence of housing instability by leveraging structured diagnosis codes and unstructured clinical data from electronic health records of 20,556 patients from 2017 to 2021. We applied natural language processing with named-entity recognition and pattern matching to unstructured clinical notes with free-text documentation. Additionally, we analyzed semi-structured addresses containing explicit or implicit housing-related labels. We assessed agreement on identification methods by having three experts review of 300 records.
    Results: Diagnostic codes only identified 58.5% of the population identifiable as having housing instability, whereas 41.5% are identifiable from addresses only (7.1%), clinical notes only (30.4%), or both (4.0%). Reviewers unanimously agreed on 79.7% of cases reviewed; a Fleiss' Kappa score of 0.35 suggested fair agreement yet emphasized the difficulty of analyzing patients having ambiguous housing situations. Among those with poisoning episodes related to stimulants or opioids, diagnosis codes were only able to identify 63.9% of those with housing instability.
    Conclusions: All three data sources yield valid evidence of housing instability; each has their own inherent practical use and limitations. Translational researchers requiring comprehensive real-world evidence of housing instability should optimize and implement use of structured and unstructured data. Understanding the role of housing instability and temporary housing facilities is salient in populations with SUDs.
    Language English
    Publishing date 2023-09-04
    Publishing country England
    Document type Journal Article
    ISSN 2059-8661
    ISSN (online) 2059-8661
    DOI 10.1017/cts.2023.626
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Balancing Data Provision and Data Protection: A Natural Experiment With HIV and Syphilis Surveillance Data in the United States.

    Delcher, Chris / Wang, Yanning / Gusovsky, Amanda V / Benitez, Joseph

    Sexually transmitted diseases

    2023  Volume 50, Issue 8, Page(s) 485–489

    Abstract: Background: Public release of health data typically requires statistical disclosure limitation (SDL), but scant research demonstrates how real-world SDL affects data usability. Recent changes of federal data re-release policy allow a pseudo- ... ...

    Abstract Background: Public release of health data typically requires statistical disclosure limitation (SDL), but scant research demonstrates how real-world SDL affects data usability. Recent changes of federal data re-release policy allow a pseudo-counterfactual comparison of HIV and syphilis data suppression rules.
    Methods: Incident counts (2019) of HIV and syphilis infections by county for Black and White populations were downloaded from the US Centers for Disease Control and Prevention. We quantified and compared suppression status by disease and county between Black and White populations and calculated incident rate ratios for counties with statistically reliable counts.
    Results: Approximately 50% of US counties have incident HIV counts suppressed for Black and White populations compared with only 5% for syphilis, which has an alternative suppression strategy. The county population sizes protected by a numerator disclosure rule (<4) spans several orders of magnitude. Calculations of incident rate ratios, used as a measure of health disparity, were impossible in the 220 counties most susceptible to an HIV outbreak.
    Conclusions: Balancing tradeoffs between providing and protecting data are key to health initiatives worldwide. We encourage an increase in empirical research on the impact of SDL, especially in the context of health disparities, and recommend new approaches to avoid the "oppression of data suppression."
    MeSH term(s) Humans ; Computer Security ; HIV Infections/epidemiology ; HIV Infections/prevention & control ; Syphilis/epidemiology ; Syphilis/prevention & control ; United States/epidemiology ; White ; Black or African American ; Disclosure/legislation & jurisprudence
    Language English
    Publishing date 2023-05-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 435191-5
    ISSN 1537-4521 ; 0148-5717
    ISSN (online) 1537-4521
    ISSN 0148-5717
    DOI 10.1097/OLQ.0000000000001828
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: bench4gis: Benchmarking Privacy-aware Geocoding with Open Big Data.

    Harris, Daniel R / Delcher, Chris

    Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data

    2020  Volume 2019, Page(s) 4067–4070

    Abstract: Geocoding, the process of translating addresses to geographic coordinates, is a relatively straight-forward and well-studied process, but limitations due to privacy concerns may restrict usage of geographic data. The impact of these limitations are ... ...

    Abstract Geocoding, the process of translating addresses to geographic coordinates, is a relatively straight-forward and well-studied process, but limitations due to privacy concerns may restrict usage of geographic data. The impact of these limitations are further compounded by the scale of the data, and in turn, also limits viable geocoding strategies. For example, healthcare data is protected by patient privacy laws in addition to possible institutional regulations that restrict external transmission and sharing of data. This results in the implementation of "in-house" geocoding solutions where data is processed behind an organization's firewall; quality assurance for these implementations is problematic because sensitive data cannot be used to externally validate results. In this paper, we present our software framework called bench4gis which benchmarks privacy-aware geocoding solutions by leveraging open big data as surrogate data for quality assurance; the scale of open big data sets for address data can ensure that results are geographically meaningful for the locale of the implementing institution.
    Language English
    Publishing date 2020-02-24
    Publishing country United States
    Document type Journal Article
    DOI 10.1109/bigdata47090.2019.9006234
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Medicaid expansion and access to naloxone in metropolitan and nonmetropolitan areas

    Cheng, Yue / Freeman, Patricia R. / Slade, Emily / Sohn, Minji / Talbert, Jeffery C. / Delcher, Chris

    The Journal of Rural Health. 2023 Mar., v. 39, no. 2 p.347-354

    2023  

    Abstract: PURPOSE: The opioid crisis remains a major public health concern in the United States. Naloxone is used to reverse opioid overdoses. This study examined Medicaid expansion on naloxone prescriptions in retail pharmacies in metropolitan (metro) and ... ...

    Abstract PURPOSE: The opioid crisis remains a major public health concern in the United States. Naloxone is used to reverse opioid overdoses. This study examined Medicaid expansion on naloxone prescriptions in retail pharmacies in metropolitan (metro) and nonmetropolitan (nonmetro) areas (2011‐2017). METHODS: We used population average models to evaluate the association of Medicaid expansion at the state level on the number of naloxone prescriptions dispensed and the percentage paid by Medicaid, including adjustment for opioid‐related and state‐level policy covariates. Difference‐in‐difference modeling was performed as a sensitivity analysis. FINDINGS: States that expanded Medicaid had higher unadjusted naloxone dispensing rates and Medicaid‐paid percentage of naloxone in metro and nonmetro areas. Medicaid expansion was not associated with the number of naloxone dispensed in either metro (adjusted rate ratio (ARR) = 1.26, 95% CI: [0.80, 1.97]) or nonmetro (ARR = 0.67, 95% CI: [0.37, 1.19]) areas after covariate adjustment. In metro areas, Medicaid expansion was associated with a significant increase of 3.86 percentage points (95% CI: [0.09, 7.63]) in the Medicaid‐paid percentage of naloxone dispensing compared to nonexpansion states, but this association was not significant in nonmetro areas. There was also a significant time by Medicaid expansion interaction on the Medicaid‐paid percentage of naloxone dispensed (metro: estimate = 0.74, 95% CI: [0.36, 1.12]; nonmetro: estimate = 0.68, 95% CI: [0.17, 1.18]). CONCLUSIONS: Medicaid expansion increased naloxone access by increasing the Medicaid‐paid percentage of naloxone prescriptions in metro areas. States with Medicaid expansion had a faster rate of increase in the Medicaid‐paid percentage of naloxone than states without Medicaid expansion in nonmetro areas.
    Keywords issues and policy ; naloxone ; rural health
    Language English
    Dates of publication 2023-03
    Size p. 347-354.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 639160-6
    ISSN 0890-765X
    ISSN 0890-765X
    DOI 10.1111/jrh.12719
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Challenges and Barriers in Applying Natural Language Processing to Medical Examiner Notes from Fatal Opioid Poisoning Cases.

    Harris, Daniel R / Eisinger, Christian / Wang, Yanning / Delcher, Chris

    Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data

    2022  Volume 2020, Page(s) 3727–3736

    Abstract: We detail the challenges and barriers in applying natural language processing techniques to a collection of medical examiner case investigation notes related to fatal opioid poisonings. Major advances in biomedical informatics have made natural language ... ...

    Abstract We detail the challenges and barriers in applying natural language processing techniques to a collection of medical examiner case investigation notes related to fatal opioid poisonings. Major advances in biomedical informatics have made natural language processing (NLP) of medical texts both a realistic and useful task. Biomedical NLP tools are typically designed to process documents originating from biomedical libraries or electronic health records (EHRs). The usefulness of biomedical NLP tools on texts authored outside of EHRs is unclear, despite an abundance of medicolegal documents existing at the intersection of medicine and law. In particular, we detail our experiences processing unstructured text and extracting semantic concepts using case investigation notes; these notes were authored by trained investigative professionals working in a medical examiner's office and describe cases containing deaths related to fatal opioid poisonings. Applying NLP to case notes is a particularly important step in generalizing the advances of biomedical NLP for other related domains and giving guidance to data scientists working with unstructured data generated outside of EHRs.
    Language English
    Publishing date 2022-03-04
    Publishing country United States
    Document type Journal Article
    DOI 10.1109/bigdata50022.2020.9378443
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Opioid Overdoses Increase at Home During the COVID-19 Stay-At-Home Order Period in Cook County, Illinois.

    Delcher, Chris / Harris, Daniel R / Anthony, Nicholas / Mir, Mojde

    AJPM focus

    2022  Volume 1, Issue 1, Page(s) 100007

    Abstract: Introduction: Stay-at-home orders during the COVID-19 pandemic decreased population mobility to reduce SARS-CoV-2 infection rates. We empirically tested the hypothesis that this public health measure was associated with a higher likelihood of opioid- ... ...

    Abstract Introduction: Stay-at-home orders during the COVID-19 pandemic decreased population mobility to reduce SARS-CoV-2 infection rates. We empirically tested the hypothesis that this public health measure was associated with a higher likelihood of opioid- and stimulant-involved deaths occurring in homes located in Cook County, Illinois.
    Methods: The stay-at-home period was from March 21, 2020 to May 30, 2020. We analyzed overdose data from the Cook County Medical Examiner's Office using a death location description from case investigations categorized as home, medical, motel, scene, and other. Two groups of decedents were defined as either having an opioid or stimulant listed in the primary cause of death field. We modeled a weekly time series to detect changes in deaths (number) and trends during segmented time periods. Chi-square or Fisher's exact and adjusted logistic regression was used for testing the differences between the stay-at-home and a 13-week preceding period.
    Results: There were 4,169 and 2,012 opioid- and stimulant-involved deaths, respectively, from 2018 to 2020. Both groups were demographically similar: 75% male, 52% White, and aged 45 years (mean). In the 13 weeks before stay-at-home orders, 51% of opioid-involved deaths occurred in homes, which increased to 59% (
    Conclusions: The likelihood of a death occurring at home, especially for people using opioids, increased during the stay-at-home order period. Findings have implications for mitigating overdose risks during social isolation.
    Language English
    Publishing date 2022-06-16
    Publishing country England
    Document type Journal Article
    ISSN 2773-0654
    ISSN (online) 2773-0654
    DOI 10.1016/j.focus.2022.100007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Sociodemographic Characteristics of Adverse Event Reporting in the USA: An Ecologic Study.

    Muñoz, Monica A / Dal Pan, Gerald J / Wei, Yu-Jung Jenny / Xiao, Hong / Delcher, Chris / Giffin, Andrew / Sadiq, Nabila / Winterstein, Almut G

    Drug safety

    2024  Volume 47, Issue 4, Page(s) 377–387

    Abstract: Introduction: The Food and Drug Administration Adverse Event Reporting System (FAERS) is a vital source of new drug safety information, but whether adverse event (AE) information collected from these systems adequately captures experiences of the ... ...

    Abstract Introduction: The Food and Drug Administration Adverse Event Reporting System (FAERS) is a vital source of new drug safety information, but whether adverse event (AE) information collected from these systems adequately captures experiences of the overall United States (US) population is unknown.
    Objective: To examine determinants of consumer AE reporting in the USA.
    Methods: Five-year AE reporting rate per 100,000 residents per US county were calculated, mapped, and quartiled for AE reports received directly from consumers between 2011 and 2015. Associations between county-level sociodemographic factors obtained from County Health Rankings and AE reporting rates were evaluated using negative binomial regression.
    Results: Reporting rates were variable across US counties with > 17.6 reports versus ≤ 5.5 reports/100,000 residents in the highest and lowest reporting quartile, respectively. Controlling for drug utilization, counties with higher reporting rates had higher proportions of individuals age ≥ 65 years (e.g., 2.4% reporting increase per 1% increase in individuals age > 65, incidence rate ratio (IRR): 1.024, 95% confidence interval (CI): 1.017-1.030), higher proportions of females (IRR: 1.027, 95% CI 1.012-1.043), uninsured (IRR: 1.009, 95% CI 1.005-1.013), higher median log household incomes (IRR: 1.897, 95% CI 1.644-2.189) and more mental health providers per 100,000 residents (IRR: 1.003, 95% CI 1.001-1.004). Lower reporting was observed in counties with higher proportions of individuals age ≤ 18 years (IRR: 0.966, 95% CI 0.959-0.974), American Indian or Alaska Native individuals (IRR: 0.991, 95% CI 0.986-0.996), individuals not proficient in English (IRR: 0.978, 95% CI 0.965-0.991), and individuals residing in rural areas within a county (IRR: 0.998, 95% CI 0.997-0.998).
    Conclusions: Observed variations in consumer AE reporting may be related to sociodemographic factors and healthcare access. Because these factors may also correspond to AE susceptibility, voluntary AE reporting systems may be suboptimal for capturing emerging drug safety concerns among more vulnerable populations.
    MeSH term(s) Female ; Humans ; United States/epidemiology ; Aged ; Adolescent ; United States Food and Drug Administration
    Language English
    Publishing date 2024-02-14
    Publishing country New Zealand
    Document type Journal Article
    ZDB-ID 1018059-x
    ISSN 1179-1942 ; 0114-5916
    ISSN (online) 1179-1942
    ISSN 0114-5916
    DOI 10.1007/s40264-024-01397-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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