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  1. AU="Deliz-Aguirre, Rafael"
  2. AU="Enrico Valletta"
  3. AU="Patan, Rizwan"
  4. AU=Koretzky Gary A
  5. AU="Vardakas, Georgios"
  6. AU="Fogg, Ryan"
  7. AU="Viviane M. Parra"
  8. AU="Kushner, Adam"
  9. AU="Claude Pasquier"
  10. AU="Guomin Zhang"
  11. AU=van der Donk Lieve E H
  12. AU="Reynaerts, Audrey"
  13. AU="Alberts, Susan C"
  14. AU="Kosicki, Jakub Z"
  15. AU=Eifling Michael
  16. AU="Xing, Xinxin"
  17. AU="Baigun, Claudio"
  18. AU="Abu-Hamad, Ghassan"
  19. AU="Mulla, Zuber D"
  20. AU="Schröder, H"
  21. AU=Ruiz Michael Anthony
  22. AU="Kemmoku, Haruka"
  23. AU="Meseguer, M"
  24. AU="Pillaye, Jayshree"
  25. AU="Andrew Pettitt"
  26. AU="Malawski, M"
  27. AU=Marhofer P
  28. AU=Mandel H G
  29. AU="Duffy, Richard"
  30. AU=Kaseb Hatem AU=Kaseb Hatem
  31. AU=Kong Tak?kwan AU=Kong Tak?kwan
  32. AU=Nagaraja Sridevi
  33. AU="Bu, Yingzi"
  34. AU=Seddighi Hamed AU=Seddighi Hamed
  35. AU="De Keyser, Johan"
  36. AU="Zhenqiang Bi"
  37. AU=Wang Jun
  38. AU=Zhang Fuping
  39. AU="Shatilov, D N"

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  1. Artikel ; Online: Myddosome clustering in IL-1 receptor signaling regulates the formation of an NF-kB activating signalosome.

    Cao, Fakun / Deliz-Aguirre, Rafael / Gerpott, Fenja Hu / Ziska, Elke / Taylor, Marcus J

    EMBO reports

    2023  Band 24, Heft 10, Seite(n) e57233

    Abstract: IL-1 receptor (IL-1R) signaling can activate thresholded invariant outputs and proportional outputs that scale with the amount of stimulation. Both responses require the Myddosome, a multiprotein complex. The Myddosome is required for polyubiquitin chain ...

    Abstract IL-1 receptor (IL-1R) signaling can activate thresholded invariant outputs and proportional outputs that scale with the amount of stimulation. Both responses require the Myddosome, a multiprotein complex. The Myddosome is required for polyubiquitin chain formation and NF-kB signaling. However, how these signals are spatially and temporally regulated to drive switch-like and proportional outcomes is not understood. During IL-1R signaling, Myddosomes dynamically reorganize into multi-Myddosome clusters at the cell membrane. Blockade of clustering using nanoscale extracellular barriers reduces NF-kB activation. Myddosomes function as scaffolds that assemble an NF-kB signalosome consisting of E3-ubiquitin ligases TRAF6 and LUBAC, K63/M1-linked polyubiquitin chains, phospho-IKK, and phospho-p65. This signalosome preferentially assembles at regions of high Myddosome density, which enhances the recruitment of TRAF6 and LUBAC. Extracellular barriers that restrict Myddosome clustering perturbed the recruitment of both ligases. We find that LUBAC was especially sensitive to clustering with 10-fold lower recruitment to single Myddosomes than clustered Myddosomes. These data reveal that the clustering behavior of Myddosomes provides a basis for digital and analog IL-1R signaling.
    Mesh-Begriff(e) NF-kappa B/metabolism ; Receptors, Interleukin-1/metabolism ; Polyubiquitin/metabolism ; TNF Receptor-Associated Factor 6/genetics ; TNF Receptor-Associated Factor 6/metabolism ; Ubiquitin-Protein Ligases/metabolism ; Ubiquitination
    Chemische Substanzen NF-kappa B ; Receptors, Interleukin-1 ; Polyubiquitin (120904-94-1) ; TNF Receptor-Associated Factor 6 ; Ubiquitin-Protein Ligases (EC 2.3.2.27)
    Sprache Englisch
    Erscheinungsdatum 2023-08-21
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2020896-0
    ISSN 1469-3178 ; 1469-221X
    ISSN (online) 1469-3178
    ISSN 1469-221X
    DOI 10.15252/embr.202357233
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Buch ; Online ; Dissertation / Habilitation: The assembly and disassembly of the IL-1 signaling pathway

    Deliz-Aguirre, Rafael [Verfasser] / Narayanan, Arjun [Gutachter] / Romagnani, Chiara [Gutachter] / Sommer, Thomas [Gutachter]

    2024  

    Verfasserangabe Rafael Deliz-Aguirre ; Gutachter: Arjun Narayanan, Chiara Romagnani, Thomas Sommer
    Schlagwörter Biowissenschaften, Biologie ; Life Science, Biology
    Thema/Rubrik (Code) sg570
    Sprache Englisch
    Verlag Humboldt-Universität zu Berlin
    Erscheinungsort Berlin
    Dokumenttyp Buch ; Online ; Dissertation / Habilitation
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  3. Artikel ; Online: MyD88 oligomer size functions as a physical threshold to trigger IL1R Myddosome signaling.

    Deliz-Aguirre, Rafael / Cao, Fakun / Gerpott, Fenja H U / Auevechanichkul, Nichanok / Chupanova, Mariam / Mun, YeVin / Ziska, Elke / Taylor, Marcus J

    The Journal of cell biology

    2021  Band 220, Heft 7

    Abstract: A recurring feature of innate immune receptor signaling is the self-assembly of signaling proteins into oligomeric complexes. The Myddosome is an oligomeric complex that is required to transmit inflammatory signals from TLR/IL1Rs and consists of MyD88 ... ...

    Abstract A recurring feature of innate immune receptor signaling is the self-assembly of signaling proteins into oligomeric complexes. The Myddosome is an oligomeric complex that is required to transmit inflammatory signals from TLR/IL1Rs and consists of MyD88 and IRAK family kinases. However, the molecular basis for how Myddosome proteins self-assemble and regulate intracellular signaling remains poorly understood. Here, we developed a novel assay to analyze the spatiotemporal dynamics of IL1R and Myddosome signaling in live cells. We found that MyD88 oligomerization is inducible and initially reversible. Moreover, the formation of larger, stable oligomers consisting of more than four MyD88s triggers the sequential recruitment of IRAK4 and IRAK1. Notably, genetic knockout of IRAK4 enhanced MyD88 oligomerization, indicating that IRAK4 controls MyD88 oligomer size and growth. MyD88 oligomer size thus functions as a physical threshold to trigger downstream signaling. These results provide a mechanistic basis for how protein oligomerization might function in cell signaling pathways.
    Mesh-Begriff(e) Adaptor Proteins, Signal Transducing ; Animals ; Humans ; Immunity, Innate/genetics ; Interleukin-1 Receptor-Associated Kinases/genetics ; Mice ; Myeloid Differentiation Factor 88/genetics ; Protein Multimerization ; Receptors, Interleukin-1 Type I/genetics ; Signal Transduction
    Chemische Substanzen Adaptor Proteins, Signal Transducing ; IL1R1 protein, mouse ; Myeloid Differentiation Factor 88 ; Receptors, Interleukin-1 Type I ; Interleukin-1 Receptor-Associated Kinases (EC 2.7.11.1) ; Irak1 protein, mouse (EC 2.7.11.1) ; Irak4 protein, mouse (EC 2.7.11.1)
    Sprache Englisch
    Erscheinungsdatum 2021-05-06
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218154-x
    ISSN 1540-8140 ; 0021-9525
    ISSN (online) 1540-8140
    ISSN 0021-9525
    DOI 10.1083/jcb.202012071
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel: Thymoma Causing Bilateral Upper Extremity Deep Vein Thrombosis.

    Bui, Hoang / Helms, Jessica L / Sierra-Hoffman, Miguel / Stevens, Mark L / Deliz-Aguirre, Rafael / Castro-Lainez, Miriams T / Deliz, Rafael J

    Respiratory medicine case reports

    2020  Band 30, Seite(n) 101049

    Abstract: A 38-year-old African American male presented with progressive pain, swelling, numbness, and warmth of the left upper extremity ten days before admission. A chest computerized tomography scan showed a large 8.3 cm × 6.1 cm x 9.9 cm anterior mediastinal ... ...

    Abstract A 38-year-old African American male presented with progressive pain, swelling, numbness, and warmth of the left upper extremity ten days before admission. A chest computerized tomography scan showed a large 8.3 cm × 6.1 cm x 9.9 cm anterior mediastinal mass with compression of the left brachiocephalic vein and superior vena cava. A venous doppler showed multiple occlusive venous thrombi in bilateral upper extremities, including the bilateral internal jugular and subclavian veins, as well as the left subclavian, axillary, cephalic, brachial and median cubital veins. Further laboratory workup came positive for acetylcholine receptor binding antibody suggesting myasthenia gravis, but the patient was asymptomatic for myasthenia gravis. A percutaneous core CT guided biopsy pathology resulted in a predominant T-cell population CD5 positive with few B cells; the immunophenotypic features suggested Type B2 thymoma. To the best of our knowledge, this case is the only reported thymoma presenting with bilateral deep vein thrombosis of the upper extremities. The deep vein thrombosis therapy was enoxaparin 1mg/kg subcutaneously every 12 hours and dexamethasone 4mg intravenously every 4 hours as an anti-inflammatory drug for thymoma related compression of the mediastinum. The patient was referred to a tertiary oncological medical center for a total thymectomy, chemotherapy, and adjuvant radiotherapy.
    Sprache Englisch
    Erscheinungsdatum 2020-04-03
    Erscheinungsland England
    Dokumenttyp Case Reports
    ZDB-ID 2666110-X
    ISSN 2213-0071
    ISSN 2213-0071
    DOI 10.1016/j.rmcr.2020.101049
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  5. Artikel: Rickettsia typhi

    Tran, Liem T / Helms, Jessica L / Sierra-Hoffman, Miguel / Stevens, Mark L / Deliz-Aguirre, Rafael / Castro-Lainez, Mirams T / Deliz, Rafael J

    IDCases

    2019  Band 18, Seite(n) e00645

    Abstract: Murine typhus, also known as endemic typhus, is a disease resulting from an infection caused by the gram-negative ... ...

    Abstract Murine typhus, also known as endemic typhus, is a disease resulting from an infection caused by the gram-negative bacillus
    Sprache Englisch
    Erscheinungsdatum 2019-09-21
    Erscheinungsland Netherlands
    Dokumenttyp Case Reports
    ZDB-ID 2745454-X
    ISSN 2214-2509
    ISSN 2214-2509
    DOI 10.1016/j.idcr.2019.e00645
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  6. Artikel ; Online: Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants.

    Deliz-Aguirre, Rafael / Atkin, Audrey L / Kebaara, Bessie W

    Current genetics

    2011  Band 57, Heft 6, Seite(n) 421–430

    Abstract: The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3'- ... ...

    Abstract The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3'-untranslated regions (UTRs) are degraded by NMD in Saccharomyces cerevisiae. A number of S. cerevisiae mRNAs undergo alternative 3'-end processing producing mRNA isoforms that differ in their 3'-UTR lengths. Some of these alternatively 3'-end processed mRNA isoforms have atypically long 3'-UTRs and would be likely targets for NMD-mediated degradation. Here, we investigated the role NMD plays in the regulation of expression of CTR2, which encodes a vacuolar membrane copper transporter. CTR2 pre-mRNA undergoes alternative 3'-end processing to produce two mRNA isoforms with 300-nt and 2-kb 3'-UTRs. We show that both CTR2 mRNA isoforms are differentially regulated by NMD. The regulation of CTR2 mRNA by NMD has physiological consequences, since nmd mutants are more tolerant to toxic levels of copper relative to wild-type yeast cells and the copper tolerance of nmd mutants is dependent on the presence of CTR2.
    Mesh-Begriff(e) Cation Transport Proteins/genetics ; Copper/metabolism ; Copper/pharmacology ; Environmental Pollutants/pharmacology ; Gene Expression Regulation, Fungal/drug effects ; Mutation ; Nonsense Mediated mRNA Decay/genetics ; Protein Isoforms/genetics ; RNA Stability/genetics ; SLC31 Proteins ; Saccharomyces cerevisiae/drug effects ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics
    Chemische Substanzen Cation Transport Proteins ; Ctr2 protein, S cerevisiae ; Environmental Pollutants ; Protein Isoforms ; SLC31 Proteins ; Saccharomyces cerevisiae Proteins ; Copper (789U1901C5)
    Sprache Englisch
    Erscheinungsdatum 2011-09-15
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 282876-5
    ISSN 1432-0983 ; 0172-8083
    ISSN (online) 1432-0983
    ISSN 0172-8083
    DOI 10.1007/s00294-011-0356-0
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  7. Artikel: Nontyphoidal

    Saddler, Kimberly / Castro-Lainez, Miriams T / Deliz-Aguirre, Rafael / Muñoz, Julieta / Aguilar Espinal, Jorge Augusto / Sierra-Hoffman, Miguel / Chandna, Harish / Howel, Alan / Midturi, John / Winn, Richard

    IDCases

    2019  Band 15, Seite(n) e00500

    Abstract: Infection with ... ...

    Abstract Infection with nontyphoidal
    Sprache Englisch
    Erscheinungsdatum 2019-02-01
    Erscheinungsland Netherlands
    Dokumenttyp Case Reports
    ZDB-ID 2745454-X
    ISSN 2214-2509
    ISSN 2214-2509
    DOI 10.1016/j.idcr.2019.e00500
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  8. Artikel: Cryptococcus laurentii

    Castro-Lainez, Miriams T / Deliz-Aguirre, Rafael / Antunez, Daphne / Cruz-Codina, Marco / Cahuayme-Zuniga, Lizbeth / Vitale, Karla / Sierra-Hoffman, Miguel / Midturi, John K

    IDCases

    2019  Band 18, Seite(n) e00612

    Abstract: ... ...

    Abstract Cryptococcus
    Sprache Englisch
    Erscheinungsdatum 2019-07-30
    Erscheinungsland Netherlands
    Dokumenttyp Case Reports
    ZDB-ID 2745454-X
    ISSN 2214-2509
    ISSN 2214-2509
    DOI 10.1016/j.idcr.2019.e00612
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  9. Artikel: Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants

    Deliz-Aguirre, Rafael / Atkin, Audrey L / Kebaara, Bessie W

    Current genetics. 2011 Dec., v. 57, no. 6

    2011  

    Abstract: The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3′- ... ...

    Abstract The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3′-untranslated regions (UTRs) are degraded by NMD in Saccharomyces cerevisiae. A number of S. cerevisiae mRNAs undergo alternative 3′-end processing producing mRNA isoforms that differ in their 3′-UTR lengths. Some of these alternatively 3′-end processed mRNA isoforms have atypically long 3′-UTRs and would be likely targets for NMD-mediated degradation. Here, we investigated the role NMD plays in the regulation of expression of CTR2, which encodes a vacuolar membrane copper transporter. CTR2 pre-mRNA undergoes alternative 3′-end processing to produce two mRNA isoforms with 300-nt and 2-kb 3′-UTRs. We show that both CTR2 mRNA isoforms are differentially regulated by NMD. The regulation of CTR2 mRNA by NMD has physiological consequences, since nmd mutants are more tolerant to toxic levels of copper relative to wild-type yeast cells and the copper tolerance of nmd mutants is dependent on the presence of CTR2.
    Schlagwörter Saccharomyces cerevisiae ; messenger RNA ; mutants ; stop codon ; toxicity ; yeasts
    Sprache Englisch
    Erscheinungsverlauf 2011-12
    Umfang p. 421-430.
    Erscheinungsort Springer-Verlag
    Dokumenttyp Artikel
    ZDB-ID 282876-5
    ISSN 1432-0983 ; 0172-8083
    ISSN (online) 1432-0983
    ISSN 0172-8083
    DOI 10.1007/s00294-011-0356-0
    Datenquelle NAL Katalog (AGRICOLA)

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  10. Artikel: Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants

    Deliz-Aguirre, Rafael / Atkin, Audrey L. / Kebaara, Bessie W.

    Current genetics

    Band v. 57,, Heft no. 6

    Abstract: The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3′- ... ...

    Abstract The eukaryotic nonsense-mediated mRNA (NMD) is a specialized pathway that leads to the recognition and rapid degradation of mRNAs with premature termination codons, and importantly some natural mRNAs as well. Natural mRNAs with atypically long 3′-untranslated regions (UTRs) are degraded by NMD in Saccharomyces cerevisiae. A number of S. cerevisiae mRNAs undergo alternative 3′-end processing producing mRNA isoforms that differ in their 3′-UTR lengths. Some of these alternatively 3′-end processed mRNA isoforms have atypically long 3′-UTRs and would be likely targets for NMD-mediated degradation. Here, we investigated the role NMD plays in the regulation of expression of CTR2, which encodes a vacuolar membrane copper transporter. CTR2 pre-mRNA undergoes alternative 3′-end processing to produce two mRNA isoforms with 300-nt and 2-kb 3′-UTRs. We show that both CTR2 mRNA isoforms are differentially regulated by NMD. The regulation of CTR2 mRNA by NMD has physiological consequences, since nmd mutants are more tolerant to toxic levels of copper relative to wild-type yeast cells and the copper tolerance of nmd mutants is dependent on the presence of CTR2.
    Schlagwörter toxicity ; messenger RNA ; stop codon ; yeasts ; mutants ; Saccharomyces cerevisiae
    Sprache Englisch
    Dokumenttyp Artikel
    ISSN 0172-8083
    Datenquelle AGRIS - International Information System for the Agricultural Sciences and Technology

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