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  1. Article ; Online: Variations in the effects of extrusion treatments and ferulic acid addition on starch digestibility with different botanical backgrounds.

    Zhou, Xianglong / Huang, Tao / Deng, Shulin / Liu, Hongsheng / Yu, Wenwen

    Carbohydrate polymers

    2024  Volume 329, Page(s) 121768

    Abstract: In the current study, the effects of extrusion using a haake rheometer with a twin-roll mixer, with and without FA addition, on the structures and in vitro digestibility of starches from different sources were investigated. After extruding for 15 min at ... ...

    Abstract In the current study, the effects of extrusion using a haake rheometer with a twin-roll mixer, with and without FA addition, on the structures and in vitro digestibility of starches from different sources were investigated. After extruding for 15 min at 90 °C with a moisture content of 40 %, no matter FA was added or not, lager Ap molecules were preferentially debranched, while Am with longer CL were depolymerized simultaneously, resulting to reduced averaged molecular size of Ap and shortened Am chains. Of all starches, regardless of their botanical backgrounds, although synergic effects were found between extrusion and FA addition on reducing their relative crystallinity and the ordered structures, distinctly different effects on the in vitro digestibility of these starches have also been observed especially regarding the digestion of starch branches with DP > 10 Particularly, the Am chains with DP 10-1000 was remaining undigested when FA was added. This study provides important information concerning how to adjust starch digestibility into a healthy range through altering the starch structures using extrusion technique with the addition of phytochemicals or not.
    MeSH term(s) Starch/chemistry ; Coumaric Acids ; Digestion
    Chemical Substances Starch (9005-25-8) ; ferulic acid (AVM951ZWST) ; Coumaric Acids
    Language English
    Publishing date 2024-01-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 1501516-6
    ISSN 1879-1344 ; 0144-8617
    ISSN (online) 1879-1344
    ISSN 0144-8617
    DOI 10.1016/j.carbpol.2023.121768
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  2. Article ; Online: Designing transition metal-based porous architectures for supercapacitor electrodes: a review.

    Ran, Feitian / Hu, Meijie / Deng, Shulin / Wang, Kai / Sun, Wanjun / Peng, Hui / Liu, Jifei

    RSC advances

    2024  Volume 14, Issue 16, Page(s) 11482–11512

    Abstract: Over the past decade, transition metal (TM)-based electrodes have shown intriguing physicochemical properties and widespread applications, especially in the field of supercapacitor energy storage owing to their diverse configurations, composition, ... ...

    Abstract Over the past decade, transition metal (TM)-based electrodes have shown intriguing physicochemical properties and widespread applications, especially in the field of supercapacitor energy storage owing to their diverse configurations, composition, porosity, and redox reactions. As one of the most intriguing research interests, the design of porous architectures in TM-based electrode materials has been demonstrated to facilitate ion/electron transport, modulate their electronic structure, diminish strain relaxation, and realize synergistic effects of multi-metals. Herein, the recent advances in porous TM-based electrodes are summarized, focusing on their typical synthesis strategies, including template-mediated assembly, thermal decomposition strategy, chemical deposition strategy, and host-guest hybridization strategy. Simultaneously, the corresponding conversion mechanism of each synthesis strategy are reviewed, and the merits and demerits of each strategy in building porous architectures are also discussed. Subsequently, TM-based electrode materials are categorized into TM oxides, TM hydroxides, TM sulfides, TM phosphides, TM carbides, and other TM species with a detailed review of their crystalline phase, electronic structure, and microstructure evolution to tune their electrochemical energy storage capacity. Finally, the challenges and prospects of porous TM-based electrode materials are presented to guide the future development in this field.
    Language English
    Publishing date 2024-04-09
    Publishing country England
    Document type Journal Article ; Review
    ISSN 2046-2069
    ISSN (online) 2046-2069
    DOI 10.1039/d4ra01320d
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  3. Article ; Online: A novel ABA-induced transcript factor from Millettia pinnata, MpAITR1, enhances salt and drought tolerance through ABA signaling in transgenic Arabidopsis.

    Yang, Heng / Zhang, Yi / Liu, Yujuan / Jian, Shuguang / Deng, Shulin

    Journal of plant physiology

    2023  Volume 288, Page(s) 154060

    Abstract: Abiotic stress, such as salt and drought stress, seriously limits plant growth and crop yield. Abscisic acid (ABA) is essential in regulating plant responses to abiotic stress via signal perception, transduction, and transcriptional regulation. Pongamia ( ...

    Abstract Abiotic stress, such as salt and drought stress, seriously limits plant growth and crop yield. Abscisic acid (ABA) is essential in regulating plant responses to abiotic stress via signal perception, transduction, and transcriptional regulation. Pongamia (Millettia pinnata) is a kind of semi-mangrove plant with strong stress tolerance and can grow in fresh and sea water. However, the molecular mechanism of the ABA signaling pathway mediating the environmental tolerance of Pongamia is still scarce so far. AITR (ABA-Induced Transcription Repressor) was a recently identified small conserved family of transcription factor in angiosperms, which played controversial roles in response to abiotic stresses in different species. Here, we identified an ABA-induced gene, MpAITR1, which encoded a nucleus localization transcriptional factor in Pongamia. MpAITR1 was highly induced by ABA and salt treatments in roots and leaves. Heterologous expression of MpAITR1 in Arabidopsis increased sensitivity to ABA, moreover, enhanced tolerance to salt and drought stress. The expression levels of some ABA-responsive and stress-responsive genes were altered in transgenic plants compared to wild-type plants under the ABA, salt, and drought stress, which was consistent with the stress-tolerant phenotype of transgenic plants. These results reveal that MpAITR1 positively modulates ABA signaling pathways and enhances the tolerance to salt and drought stress by regulating downstream target genes. Taken together, MpAITR1 from the semi-mangrove plant Pongamia serves as a potential candidate for stress-tolerant crop breeding.
    MeSH term(s) Abscisic Acid/metabolism ; Arabidopsis/metabolism ; Millettia/genetics ; Millettia/metabolism ; Drought Resistance ; Sodium Chloride/pharmacology ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Plants, Genetically Modified/metabolism ; Stress, Physiological/physiology ; Droughts ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism
    Chemical Substances Abscisic Acid (72S9A8J5GW) ; Sodium Chloride (451W47IQ8X) ; Transcription Factors ; Plant Proteins
    Language English
    Publishing date 2023-08-01
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 283647-6
    ISSN 1618-1328 ; 0176-1617
    ISSN (online) 1618-1328
    ISSN 0176-1617
    DOI 10.1016/j.jplph.2023.154060
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  4. Article ; Online: A novel ABA-induced transcript factor from Millettia pinnata, MpAITR1, enhances salt and drought tolerance through ABA signaling in transgenic Arabidopsis

    Yang, Heng / Zhang, Yi / Liu, Yujuan / Jian, Shuguang / Deng, Shulin

    Journal of Plant Physiology. 2023 Sept., v. 288 p.154060-

    2023  

    Abstract: Abiotic stress, such as salt and drought stress, seriously limits plant growth and crop yield. Abscisic acid (ABA) is essential in regulating plant responses to abiotic stress via signal perception, transduction, and transcriptional regulation. Pongamia ( ...

    Abstract Abiotic stress, such as salt and drought stress, seriously limits plant growth and crop yield. Abscisic acid (ABA) is essential in regulating plant responses to abiotic stress via signal perception, transduction, and transcriptional regulation. Pongamia (Millettia pinnata) is a kind of semi-mangrove plant with strong stress tolerance and can grow in fresh and sea water. However, the molecular mechanism of the ABA signaling pathway mediating the environmental tolerance of Pongamia is still scarce so far. AITR (ABA-Induced Transcription Repressor) was a recently identified small conserved family of transcription factor in angiosperms, which played controversial roles in response to abiotic stresses in different species. Here, we identified an ABA-induced gene, MpAITR1, which encoded a nucleus localization transcriptional factor in Pongamia. MpAITR1 was highly induced by ABA and salt treatments in roots and leaves. Heterologous expression of MpAITR1 in Arabidopsis increased sensitivity to ABA, moreover, enhanced tolerance to salt and drought stress. The expression levels of some ABA-responsive and stress-responsive genes were altered in transgenic plants compared to wild-type plants under the ABA, salt, and drought stress, which was consistent with the stress-tolerant phenotype of transgenic plants. These results reveal that MpAITR1 positively modulates ABA signaling pathways and enhances the tolerance to salt and drought stress by regulating downstream target genes. Taken together, MpAITR1 from the semi-mangrove plant Pongamia serves as a potential candidate for stress-tolerant crop breeding.
    Keywords Arabidopsis ; Millettia pinnata ; abscisic acid ; crop yield ; drought tolerance ; genes ; heterologous gene expression ; phenotype ; plant growth ; salt tolerance ; seawater ; stress tolerance ; transcription (genetics) ; transcription factors ; water stress ; MpAITR1 ; ABA ; Abiotic stress
    Language English
    Dates of publication 2023-09
    Publishing place Elsevier GmbH
    Document type Article ; Online
    ZDB-ID 283647-6
    ISSN 1618-1328 ; 0176-1617
    ISSN (online) 1618-1328
    ISSN 0176-1617
    DOI 10.1016/j.jplph.2023.154060
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  5. Article ; Online: Identification and functional characterization of the SUMO system in sweet potato under salt and drought stress

    Zhang, Yi / Lyu, Shanwu / Hu, Zhifang / Yang, Xuangang / Zhu, Hongbo / Deng, Shulin

    Plant Science. 2023 May, v. 330 p.111645-

    2023  

    Abstract: Sumoylation is a crucial post-translation modification (PTM) that is the covalent attachment of SUMO molecules to the substrate catalyzed by enzyme cascade. Sumoylation is essential in almost every physiological process of plants, particularly in ... ...

    Abstract Sumoylation is a crucial post-translation modification (PTM) that is the covalent attachment of SUMO molecules to the substrate catalyzed by enzyme cascade. Sumoylation is essential in almost every physiological process of plants, particularly in response to abiotic stress. However, little is known about sumoylation in sweet potato (Ipomoea batatas), the world's seventh most important food crop. In this study, 17 sweet potato SUMO system genes have been cloned and functionally characterized. Multiple sequence alignment and phylogenetic analysis showed sweet potato SUMO system proteins had conserved domains and activity sites. IbSUMOs, IbSAE1, and IbSCE1 were localized in the cytoplasm and nucleus. E3 SUMO ligases showed nuclear or punctate localization. In vitro sumoylation assay confirmed the catalytic activity of sweet potato SUMO system components. Heterologous expression of IbSIZ1 genes in Arabidopsis atsiz1 mutant rescued the defective germination and growth phenotype. IbSCE1a/b and IbSIZ1a/b/c were salt and drought responsive genes. Heterologous expression of IbSCE1a/b/c improved the drought tolerance of Arabidopsis thaliana, while IbSIZ1a/b/c significantly enhanced the salt and drought tolerance. Our findings define that the SUMO system in sweet potato shared with conserved function but also possessed specific characterization. The resources presented here would facilitate uncovering the significance of sumoylation in sweet potato.
    Keywords Arabidopsis thaliana ; Ipomoea batatas ; catalytic activity ; cytoplasm ; drought ; drought tolerance ; food crops ; germination ; heterologous gene expression ; ligases ; mutants ; phenotype ; phylogeny ; sequence alignment ; sumoylation ; sweet potatoes ; water stress ; Sweet potato ; Abiotic stress
    Language English
    Dates of publication 2023-05
    Publishing place Elsevier B.V.
    Document type Article ; Online
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2023.111645
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  6. Article ; Online: GRACE-based groundwater drought in the Indochina Peninsula during 1979-2020: Changing properties and possible teleconnection mechanisms.

    Song, Xuanhua / Chen, Hao / Chen, Tan / Qin, Zhihao / Chen, Sheng / Yang, Ni / Deng, Shulin

    The Science of the total environment

    2023  Volume 908, Page(s) 168423

    Abstract: Groundwater is very important for human productivity and daily life, hydrological cycle regulation, and ecosystem stability. However, due to the complex mechanisms of groundwater drought, the spatial and temporal variations of groundwater drought and its ...

    Abstract Groundwater is very important for human productivity and daily life, hydrological cycle regulation, and ecosystem stability. However, due to the complex mechanisms of groundwater drought, the spatial and temporal variations of groundwater drought and its driving mechanisms are still not fully understood, especially in Indochina Peninsula. In this work, we used a reconstructed long-term terrestrial water storage dataset from the Gravity Recovery and Climate Experiment (GRACE) emission and a GRACE-based groundwater drought index to investigate the spatial and temporal characteristics of groundwater drought during 1979-2020 in the Indochina Peninsula. The possible teleconnection mechanisms between groundwater drought and the Indian Ocean Dipole (IOD), El Niño-Southern Oscillation (ENSO), and El Niño Modoki (ENSO_M) were also investigated using cross wavelet transform method. The results show that groundwater drought worsens significantly during 1979-2020, and becomes much more frequent and intensified after 2000 in the southern Indochina Peninsula. Both univariate and bivariate (logic 'or' and 'and') return periods for duration, severity, and peak of groundwater drought are short in the southern Indochina Peninsula, and thus the risk of groundwater drought is high. The IOD, ENSO, and ENSO_M can reduce the intensity of groundwater drought to a certain extent during the warm phases, but only ENSO_M tends to significantly exacerbate the intensity of groundwater drought during the cold phases in the southern Indochina Peninsula. The variations in groundwater drought are dominated by ENSO_M, and are also coupled influenced by the IOD and ENSO in the southern Indochina Peninsula. The results provide valuable information for the sustainable ecological environment and socioeconomic development, especially development of groundwater drought early warning and prediction models in the Indochina Peninsula.
    Language English
    Publishing date 2023-11-10
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2023.168423
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  7. Article ; Online: Identification and functional characterization of the SUMO system in sweet potato under salt and drought stress.

    Zhang, Yi / Lyu, Shanwu / Hu, Zhifang / Yang, Xuangang / Zhu, Hongbo / Deng, Shulin

    Plant science : an international journal of experimental plant biology

    2023  Volume 330, Page(s) 111645

    Abstract: Sumoylation is a crucial post-translation modification (PTM) that is the covalent attachment of SUMO molecules to the substrate catalyzed by enzyme cascade. Sumoylation is essential in almost every physiological process of plants, particularly in ... ...

    Abstract Sumoylation is a crucial post-translation modification (PTM) that is the covalent attachment of SUMO molecules to the substrate catalyzed by enzyme cascade. Sumoylation is essential in almost every physiological process of plants, particularly in response to abiotic stress. However, little is known about sumoylation in sweet potato (Ipomoea batatas), the world's seventh most important food crop. In this study, 17 sweet potato SUMO system genes have been cloned and functionally characterized. Multiple sequence alignment and phylogenetic analysis showed sweet potato SUMO system proteins had conserved domains and activity sites. IbSUMOs, IbSAE1, and IbSCE1 were localized in the cytoplasm and nucleus. E3 SUMO ligases showed nuclear or punctate localization. In vitro sumoylation assay confirmed the catalytic activity of sweet potato SUMO system components. Heterologous expression of IbSIZ1 genes in Arabidopsis atsiz1 mutant rescued the defective germination and growth phenotype. IbSCE1a/b and IbSIZ1a/b/c were salt and drought responsive genes. Heterologous expression of IbSCE1a/b/c improved the drought tolerance of Arabidopsis thaliana, while IbSIZ1a/b/c significantly enhanced the salt and drought tolerance. Our findings define that the SUMO system in sweet potato shared with conserved function but also possessed specific characterization. The resources presented here would facilitate uncovering the significance of sumoylation in sweet potato.
    MeSH term(s) Ipomoea batatas/metabolism ; Droughts ; Phylogeny ; Plants, Genetically Modified/genetics ; Stress, Physiological/genetics ; Sodium Chloride/metabolism ; Arabidopsis/genetics ; Arabidopsis/metabolism ; Gene Expression Regulation, Plant
    Chemical Substances Sodium Chloride (451W47IQ8X)
    Language English
    Publishing date 2023-02-23
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2023.111645
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  8. Article: Analysis of Canopy Gaps of Coastal Broadleaf Forest Plantations in Northeast Taiwan Using UAV Lidar and the Weibull Distribution

    Chung, Chih-Hsin / Wang, Jonathan / Deng, Shu-Lin / Huang, Cho-ying

    Remote Sensing. 2022 Jan. 30, v. 14, no. 3

    2022  

    Abstract: Canopy gaps are pivotal for monitoring forest ecosystem dynamics. Conventional field methods are time-consuming and labor intensive, making them impractical for regional mapping and systematic monitoring. Gaps may be delineated using airborne lidar or ... ...

    Abstract Canopy gaps are pivotal for monitoring forest ecosystem dynamics. Conventional field methods are time-consuming and labor intensive, making them impractical for regional mapping and systematic monitoring. Gaps may be delineated using airborne lidar or aerial photographs acquired from a manned aircraft. However, high cost in data acquisition and low flexibility in flight logistics significantly reduce the accessibility of the approaches. To address these issues, this study utilized miniature light detection and ranging (lidar) onboard an unmanned aircraft vehicle (UAVₗᵢdₐᵣ) to map forest canopy gaps of young and mature broadleaf forest plantations along the coast of northeastern Taiwan. This study also used UAV photographs (UAVₚₕₒₜₒ) for the same task for comparison purposes. The canopy height models were derived from UAVₗᵢdₐᵣ and UAVₚₕₒₜₒ with the availability of a digital terrain model from UAVₗᵢdₐᵣ. Canopy gap distributions of the forests were modeled with the power-law zeta and Weibull distributions. The performance of UAVₗᵢdₐᵣ was found to be superior to UAVₚₕₒₜₒ in delineating the gap distribution through ground observation, mainly due to lidar’s ability to detect small canopy gaps. There were apparent differences of the power-law zeta distributions for the young and mature forest stands with the exponents λ of 1.36 (1.45) and 1.71 (1.61) for UAVₗᵢdₐᵣ and UAVₚₕₒₜₒ, respectively, suggesting that larger canopy gaps were present within the younger stands. The canopy layer of mature forest stands was homogeneous, and the size distributions of both sensors and methods were insensitive to the spatial extent of the monitored area. Contrarily, the young forests were heterogeneous, but only UAVₗᵢdₐᵣ with the Weibull distribution responded to the change of spatial extent. This study demonstrates that using the Weibull distribution to analyze canopy gap from high-spatial resolution UAVₗᵢdₐᵣ may provide detailed information of regional forest canopy of coastal broadleaf forests.
    Keywords Weibull statistics ; canopy gaps ; canopy height ; coasts ; data collection ; deciduous forests ; flight ; forest canopy ; forest ecosystems ; labor ; landscapes ; lidar ; models ; unmanned aerial vehicles ; Taiwan
    Language English
    Dates of publication 2022-0130
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2513863-7
    ISSN 2072-4292
    ISSN 2072-4292
    DOI 10.3390/rs14030667
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  9. Article ; Online: Four Novel Leaderless Bacteriocins, Bacin A1, A2, A3, and A4 Exhibit Potent Antimicrobial and Antibiofilm Activities against Methicillin-Resistant Staphylococcus aureus.

    Liu, Shu / Deng, Shulin / Liu, Hualin / Tang, Liang / Wang, Mengqi / Xin, Bingyue / Li, Feng

    Microbiology spectrum

    2022  Volume 10, Issue 5, Page(s) e0094522

    Abstract: Methicillin-resistant Staphylococcus aureus (MRSA) is a major bacterial pathogen that causes hospital- and community-acquired infections. Owing to its multidrug resistance, it is imperative to develop new antimicrobial agents to treat MRSA infections. In ...

    Abstract Methicillin-resistant Staphylococcus aureus (MRSA) is a major bacterial pathogen that causes hospital- and community-acquired infections. Owing to its multidrug resistance, it is imperative to develop new antimicrobial agents to treat MRSA infections. In this study, using genome mining analysis and a culture-based screening method to detect bacteriocin activity, we screened a strain, Bacillus sp. TL12, which harbored a putative leaderless bacteriocin gene cluster (
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Bacteriocins/pharmacology ; Biofilms ; Methicillin-Resistant Staphylococcus aureus ; Microbial Sensitivity Tests ; Staphylococcus aureus
    Chemical Substances Anti-Bacterial Agents ; Bacteriocins
    Language English
    Publishing date 2022-08-24
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2807133-5
    ISSN 2165-0497 ; 2165-0497
    ISSN (online) 2165-0497
    ISSN 2165-0497
    DOI 10.1128/spectrum.00945-22
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  10. Article ; Online: Genome assembly of the pioneer species Plantago major L. (Plantaginaceae) provides insight into its global distribution and adaptation to metal-contaminated soil.

    Lyu, Shanwu / Mei, Qiming / Liu, Hui / Wang, Baosheng / Wang, Jun / Lambers, Hans / Wang, Zhengfeng / Dong, Bin / Liu, Zhanfeng / Deng, Shulin

    DNA research : an international journal for rapid publication of reports on genes and genomes

    2023  Volume 30, Issue 4

    Abstract: Plantago is a major genus belonging to the Plantaginaceae family and is used in herbal medicine, functional food, and pastures. Several Plantago species are also characterized by their global distribution, but the mechanism underpinning this is not known. ...

    Abstract Plantago is a major genus belonging to the Plantaginaceae family and is used in herbal medicine, functional food, and pastures. Several Plantago species are also characterized by their global distribution, but the mechanism underpinning this is not known. Here, we present a high-quality, chromosome-level genome assembly of Plantago major L., a species of Plantago, by incorporating Oxford Nanopore sequencing and Hi-C technologies. The genome assembly size was approximately 671.27 Mb with a contig N50 length of 31.30 Mb. 31,654 protein-coding genes were identified from the genome. Evolutionary analysis showed that P. major diverged from other Lamiales species at ~62.18 Mya and experienced two rounds of WGD events. Notably, many gene families related to plant acclimation and adaptation expanded. We also found that many polyphenol biosynthesis genes showed high expression patterns in roots. Some amino acid biosynthesis genes, such as those involved in histidine synthesis, were highly induced under metal (Ni) stress that led to the accumulation of corresponding metabolites. These results suggest persuasive arguments for the global distribution of P. major through multiscale analysis. Decoding the P. major genome provides a valuable genomic resource for research on dissecting biological function, molecular evolution, taxonomy, and breeding.
    MeSH term(s) Plantago/genetics ; Plantaginaceae/genetics ; Plant Breeding ; Chromosomes ; Acclimatization ; Soil ; Phylogeny
    Chemical Substances Soil
    Language English
    Publishing date 2023-05-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 1212508-8
    ISSN 1756-1663 ; 1340-2838
    ISSN (online) 1756-1663
    ISSN 1340-2838
    DOI 10.1093/dnares/dsad013
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