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  1. Article: Machine and deep learning approaches to understand and predict habitat suitability for seabird breeding.

    Garcia-Quintas, Antonio / Roy, Amédée / Barbraud, Christophe / Demarcq, Hervé / Denis, Dennis / Lanco Bertrand, Sophie

    Ecology and evolution

    2023  Volume 13, Issue 9, Page(s) e10549

    Abstract: The way animals select their breeding habitat may have great impacts on individual fitness. This complex process depends on the integration of information on various environmental factors, over a wide range of spatiotemporal scales. For seabirds, ... ...

    Abstract The way animals select their breeding habitat may have great impacts on individual fitness. This complex process depends on the integration of information on various environmental factors, over a wide range of spatiotemporal scales. For seabirds, breeding habitat selection integrates both land and sea features over several spatial scales. Seabirds explore these features prior to breeding, assessing habitats' quality. However, the information-gathering and decision-making process by seabirds when choosing a breeding habitat remains poorly understood. We compiled 49 historical records of larids colonies in Cuba from 1980 to 2020. Then, we predicted potentially suitable breeding sites for larids and assessed their breeding macrohabitat selection, using deep and machine learning algorithms respectively. Using a convolutional neural network and Landsat satellite images we predicted the suitability for nesting of non-monitored sites of this archipelago. Furthermore, we assessed the relative contribution of 18 land- and marine-based environmental covariates describing macrohabitats at three spatial scales (i.e. 10, 50 and 100 km) using random forests. Convolutional neural network exhibited good performance at training, validation and test (F1-scores >85%). Sites with higher habitat suitability (
    Language English
    Publishing date 2023-09-17
    Publishing country England
    Document type Journal Article
    ZDB-ID 2635675-2
    ISSN 2045-7758
    ISSN 2045-7758
    DOI 10.1002/ece3.10549
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Quantitative imagery analysis of spot patterns for the three-haplogroup classification of Triatoma dimidiata (Latreille, 1811) (Hemiptera: Reduviidae), an important vector of Chagas disease.

    Cruz, Daryl D / Denis, Dennis / Arellano, Elizabeth / Ibarra-Cerdeña, Carlos N

    Parasites & vectors

    2021  Volume 14, Issue 1, Page(s) 90

    Abstract: Background: Spots and coloring patterns evaluated quantitatively can be used to discriminate and identify possible cryptic species. Species included in the Triatoma dimidiata (Reduviidae: Triatominae) complex are major disease vectors of Chagas disease. ...

    Abstract Background: Spots and coloring patterns evaluated quantitatively can be used to discriminate and identify possible cryptic species. Species included in the Triatoma dimidiata (Reduviidae: Triatominae) complex are major disease vectors of Chagas disease. Phylogenetic studies have defined three haplogroups for Mexico and part of Central America. We report here our evaluation of the possibility of correctly discriminating these three T. dimidiata haplogroups using the pattern of the dorsal spots.
    Methods: Digital images of the dorsal region of individuals from the three haplogroups were used. Image processing was used to extract primary and secondary variables characterizing the dorsal spot pattern. Statistical analysis of the variables included descriptive statistics, non-parametric Kruskal-Wallis tests, discriminant function analysis (DFA) and a neural classification network.
    Results: A distinctive spot pattern was found for each haplogroup. The most differentiated pattern was presented by haplogroup 2, which was characterized by its notably larger central spots. Haplogroups 1 and 3 were more similar to each other, but there were consistent differences in the shape and orientation of the spots. Significant differences were found among haplogroups in almost all of the variables analyzed, with the largest differences seen for relative spot area, mean relative area of central spots, central spots Feret diameter and lateral spots Feret diameter and aspect ratio. Both the DFA and the neural network had correct discrimination values of > 90%.
    Conclusions: Based on the results of this analysis, we conclude that the spot pattern can be reliably used to discriminate among the three haplogroups of T. dimidiata in Mexico, and possibly among triatomine species.
    MeSH term(s) Animals ; Central America ; Chagas Disease/transmission ; Classification ; Insect Vectors/anatomy & histology ; Insect Vectors/classification ; Mexico ; Pigmentation ; Triatoma/anatomy & histology ; Triatoma/classification
    Language English
    Publishing date 2021-01-29
    Publishing country England
    Document type Journal Article
    ZDB-ID 2409480-8
    ISSN 1756-3305 ; 1756-3305
    ISSN (online) 1756-3305
    ISSN 1756-3305
    DOI 10.1186/s13071-021-04598-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Tamaño poblacional y patron de conducta de Grus Canadensis (Aves: Gruidae) en dos localidades de Cuba.

    Ferrer-Sánchez, Yarelys / Ruiz, Idael / Denis, Dennis / Torres, Yordanis / Abasolo-Pacheco, Fernando / Plasencia-Vázquez, Alexis H

    Revista de biologia tropical

    2016  Volume 64, Issue 4, Page(s) 1495–1504

    Abstract: The availability of information on species abundance in the Neotropic is insufficient, and this prevents the execution of precise analysis and the definition of adequate conservation strategies for endemic and threatened species. This study aimed to ... ...

    Title translation Population size and behavior pattern of Grus canadensis nesiotes (Aves: Gruidae) in two localities of Cuba.
    Abstract The availability of information on species abundance in the Neotropic is insufficient, and this prevents the execution of precise analysis and the definition of adequate conservation strategies for endemic and threatened species. This study aimed to analyze the population size of the endemic and threatened subspecies Grus canadensis nesiotes. For this, a simultaneous census was undertaken in 24 count stations in Isla de la Juventud (IJ) and 32 stations in Ciego de Ávila (CA), Cuba, during two consecutive days between 2008 and 2010. Abundance and behavior pattern (instantaneous method) were analyzed by habitat type, to help understand how cranes modify their behavioral pattern when the natural habitat is changed. Flocks in IJ had three individuals, and between 1.9 ± 1.5 and 2.8 ± 1.5 in CA. Population size in IJ was 164 individuals, and in CA of 137, 141 and 168 individuals for the 2008-2010 period, respectively. The counting efficacy was high (IJ: 91 %; CA: 81-87 %) and the numerical concordance was intermediate (IJ: 45.4 %; CA: 72 %). When comparing the habitat type, the abundance was higher in natural savannahs (83), followed by coastal flats (59), pines (23) and cattle pastures (7) in IJ; while in CA, marsh grasslands hosted the greatest abundance for the three years period (130; 120; 112), followed by grassland with palms (2; 17; 51) and cattle pastures (5; 4; 5). The cranes were fed more in cattle pastures and were more alert in natural savannas and marsh grasslands. The frequency of feeding and alert behaviors was different from the natural savannah/coastal flats and natural savannah/cattle pastures combinations in IJ. For CA, differences were found between marsh grasslands and marsh grasslands with palms. The population size increased by management strategies adopted in CA; nevertheless, might be affected by habitat loss associated with invasive alien plants in IJ. We propose the maintenance of prescribed fire in marsh grasslands under protection regime, as a strategy for long-term management to contribute with population growth.
    MeSH term(s) Animal Distribution ; Animals ; Behavior, Animal/physiology ; Birds/physiology ; Cuba ; Ecosystem ; Population Density ; Statistics, Nonparametric ; Time Factors
    Language Spanish
    Publishing date 2016-12
    Publishing country Costa Rica
    Document type Journal Article
    ZDB-ID 2020929-0
    ISSN 2215-2075 ; 0034-7744
    ISSN (online) 2215-2075
    ISSN 0034-7744
    Database MEDical Literature Analysis and Retrieval System OnLINE

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