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Article ; Online: Introducing a portable electrochemical biosensor for Mycobacterium avium subsp. paratuberculosis detection using graphene oxide and chitosan.

Naghshgar, Nahid / Hosseinzadeh, Saied / Derakhshandeh, Abdollah / Shaali, Ruhollah / Doroodmand, Mohammad Mahdi

2024 Volume 14, Issue 1, Page(s) 34

Abstract: In this contribution, a novel, low-cost, high throughput, and ultra-selective electrochemical DNA nanobiosensor was developed for accurate on-site detection of Mycobacterium avium subspecies paratuberculosis (MAP) in real media for practical diagnosis of ...

Abstract	In this contribution, a novel, low-cost, high throughput, and ultra-selective electrochemical DNA nanobiosensor was developed for accurate on-site detection of Mycobacterium avium subspecies paratuberculosis (MAP) in real media for practical diagnosis of Johne's disease (JD). The method was designed based on the immobilization of graphene oxide and chitosan biopolymer on the surface of a glassy carbon electrode, modified by electrochemical immobilization of graphene oxide and chitosan biopolymer, followed by activation of biopolymer via 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride and N-hydroxy succinimide (EDC/NHS) coupling system. Afterward, the commercial probe DNA (ssDNA) was stabilized on the activated electrode surface to prepare an ultra-selective ssDNA-stabilized nanobiosensor for MAP sensing called "ssDNA-stabilized GO-CH-EDC/NHS-modified electrode". Several characterization methods distinguished the bioelectrode. The DNA hybridization between the nanobiosensor and target DNA was confirmed by cyclic voltammetry and differential pulse voltammetry. "At optimal experimental conditions, the nanobiosensor showed a linear range of 1.0 × 10
MeSH term(s)	Animals ; Mycobacterium avium subsp. paratuberculosis/genetics ; Chitosan/chemistry ; Reproducibility of Results ; DNA ; Biosensing Techniques/methods
Chemical Substances	graphene oxide ; Chitosan (9012-76-4) ; DNA (9007-49-2)
Language	English
Publishing date	2024-01-02
Publishing country	England
Document type	Journal Article
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-023-50706-z
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Article ; Online: Molecular typing and virulence characteristics of Escherichia coli strains isolated from hospital and community acquired urinary tract infections.

Naziri, Zahra / Derakhshandeh, Abdollah / Hajirajabi, Maryam / Abbasi, Fatemeh / Moezzi, Maryam Sadat / Shirmohamadi Sosfad, Abolfazl

Molecular biology reports

2024 Volume 51, Issue 1, Page(s) 509

Abstract: Background: The main causes of hospital- and community-acquired urinary tract infections (UTIs) are a group of Escherichia coli (E. coli) strains with multiple virulence factors known as uropathogenic E. coli.: Methods and results: One hundred E. ... ...

Abstract	Background: The main causes of hospital- and community-acquired urinary tract infections (UTIs) are a group of Escherichia coli (E. coli) strains with multiple virulence factors known as uropathogenic E. coli. Methods and results: One hundred E. coli isolates from the urine specimens of hospital- and community-acquired UTI patients were characterized based on their virulence factors and genetic relatedness using PCR and RAPD‒PCR, respectively. Among all, the traT (71%), sitA (64%), ompT (54%), malX (49%), ibeA (44%), tsh (39%), hlyD (18%) and cnf1 (12%) genes had the highest to lowest frequencies, respectively. There was no significant difference between the frequency of tested virulence genes in E. coli isolates from inpatients and outpatients. The frequency of the hlyD gene was significantly greater in E. coli isolates from patients hospitalized in gynecology, dermatology and intensive care unit (ICU) wards than in those from other wards. Eight virulence gene patterns were common among the isolates of inpatients in different wards of the same hospital, of which five patterns belonged to the isolates of inpatients in the same ward. More E. coli isolates with similar virulence gene patterns and greater genetic similarity were found in female patients than in male patients. The analysis of the RAPD‒PCR dendrograms revealed more genetic similarities among the E. coli isolates from inpatients than among those from outpatients. Conclusion: Our findings indicate the presence of a wide variety of virulence factors in E. coli isolates and the possibility of spreading the same clones in different wards of the hospital.
MeSH term(s)	Humans ; Male ; Female ; Escherichia coli Infections/drug therapy ; Virulence/genetics ; Random Amplified Polymorphic DNA Technique ; Urinary Tract Infections/drug therapy ; Hospitals ; Molecular Typing ; Virulence Factors/genetics ; Uropathogenic Escherichia coli/genetics ; Anti-Bacterial Agents/therapeutic use
Chemical Substances	Virulence Factors ; Anti-Bacterial Agents
Language	English
Publishing date	2024-04-15
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	186544-4
ISSN	1573-4978 ; 0301-4851
ISSN (online)	1573-4978
ISSN	0301-4851
DOI	10.1007/s11033-024-09485-7
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Article ; Online: Immunoinformatics analysis of candidate proteins for controlling bovine paratuberculosis.

Moezzi, Maryam Sadat / Derakhshandeh, Abdollah / Hemmatzadeh, Farhid

PloS one

2022 Volume 17, Issue 11, Page(s) e0277751

Abstract: Background: Paratuberculosis is debilitating chronic enteritis usually characterized by diarrhea, decreased milk production, and progressive cachexia. Mycobacterium avium subspecies paratuberculosis (MAP) causes significant economic losses by affecting ... ...

Abstract	Background: Paratuberculosis is debilitating chronic enteritis usually characterized by diarrhea, decreased milk production, and progressive cachexia. Mycobacterium avium subspecies paratuberculosis (MAP) causes significant economic losses by affecting dairy herds globally. Development of protective vaccines is considered as one of the most effective controlling measures for MAP infections. In the current study, hydrophilic parts of MAP2191 and FAP-P proteins as two vaccine candidates were analyzed using immunoinformatics approaches. Methods: After selecting the most hydrophilic parts of MAP2191 and FAP-P, helper and cytotoxic T-cell epitopes of ht-MAP2191 and ht-FAP-P were identified. The immunogenic, toxicity and physicochemical properties were assessed. Secondary structures of these proteins were predicted, and their tertiary structures were modeled, refined, and validated. Linear and conformational epitopes of corresponding B-cells were recognized. Then ht-MAP2191 and ht-FAP-P epitopes were employed for molecular docking simulations. Results: The results indicated that ht-MAP2191 and ht-FAP-P were immunogenic, non-allergenic, and non-toxic and possess potent T-cell and B-cell epitopes. Eventually, these protein constructs were docked favorably against TLR4. Conclusion: According to the findings, ht-MAP2191 and ht-FAP-P could be effective protein-based vaccine candidates for paratuberculosis. It should be noted that to examine their efficacy, further in vitro and in vivo experiments are underway.
MeSH term(s)	Cattle ; Animals ; Paratuberculosis/microbiology ; Molecular Docking Simulation ; Mycobacterium avium subsp. paratuberculosis ; Cattle Diseases/microbiology ; Epitopes, B-Lymphocyte
Chemical Substances	Epitopes, B-Lymphocyte
Language	English
Publishing date	2022-11-21
Publishing country	United States
Document type	Journal Article
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0277751
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Article ; Online: Immuno-reactivity evaluation of Mce-truncated subunit candidate vaccine against Mycobacterium avium subspecies paratuberculosis challenge in the goat models.

Haghkhah, Masoud / Hemati, Zahra / Derakhshandeh, Abdollah / Namazi, Fatemeh / Chaubey, Kundan Kumar / Singh, Shoor Vir

BMC veterinary research

2023 Volume 19, Issue 1, Page(s) 157

Abstract: Background: Detection of an appropriate antigen with high immunogenicity can be a big step in the production of an effective vaccine for control of Johne's disease (JD). The aim of this study was to evaluate the efficacy of Mce-truncated protein as a ... ...

Abstract	Background: Detection of an appropriate antigen with high immunogenicity can be a big step in the production of an effective vaccine for control of Johne's disease (JD). The aim of this study was to evaluate the efficacy of Mce-truncated protein as a subunit vaccine candidate for the control of JD in experimentally challenged goats. Materials and methods: Six healthy goat kids were immunized with Mce-truncated protein, and two goats were kept as controls. All kids were twice challenged orally with live Mycobacterium avium subspecies paratuberculosis(MAP) strain and half the goats from both the categories were sacrificed at 7 and 10 months after start of challenge study. Culture of MAP was performed from all the necropsied tissues to determine the true JD infection status. Results: Mce-truncated protein only reacted with pooled vaccinated goat sera in western-blot. A significant increase in humoral immune response against Mce protein was also observed in vaccinated goats. Compared to the control group, vaccinated goats gained higher body weights and none of them shed MAP or showed histopatological lesions or colonization of MAP in their necropsy tissues. Conclusions: The new Mce protein based vaccine provided significant immunity in goats as they could meet the challenge with live MAP bacilli. Although the vaccine used in this study showed the high potential as a new effective vaccine for the control of JD, further validation study is still required to successfully implement the vaccine for JD control program.
MeSH term(s)	Animals ; Mycobacterium avium subsp. paratuberculosis ; Goats ; Vaccines, Subunit ; Immunity, Humoral ; Paratuberculosis/prevention & control ; Goat Diseases/prevention & control
Chemical Substances	Vaccines, Subunit
Language	English
Publishing date	2023-09-14
Publishing country	England
Document type	Journal Article
ZDB-ID	2191675-5
ISSN	1746-6148 ; 1746-6148
ISSN (online)	1746-6148
ISSN	1746-6148
DOI	10.1186/s12917-023-03715-z
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Article ; Online: A novel fusion protein candidate for the serodiagnosis of Mycoplasma agalactiae infection.

Akbarzadeh-Niaki, Malihe / Derakhshandeh, Abdollah / Kazemipour, Nasrin / Hemmatzadeh, Farhid

BMC veterinary research

2022 Volume 18, Issue 1, Page(s) 456

Abstract: Background: The aim of current study was to construct, express, purify and immunogenicity evaluate of a novel recombinant fusion protein including Pyruvate dehydrogenase beta subunit (PDHB) and high antigenic region of lipoprotein P80 of Mycoplasma ... ...

Abstract	Background: The aim of current study was to construct, express, purify and immunogenicity evaluate of a novel recombinant fusion protein including Pyruvate dehydrogenase beta subunit (PDHB) and high antigenic region of lipoprotein P80 of Mycoplasma agalactiae. Using bioinformatics tools, antigenicity and physiochemical properties of fused protein were assessed. Material and methods: The recombinant fusion protein of GST-PDHB-P80 were expressed in pGEX4T-1 and purified then verified by Western blot assay. The purified protein was successfully used for immunization of mice. 30 female BALB/c mice were divided into three groups (10 mice per each group) injected with GST-PDHB-P80, inactivated bacteria vaccine and PBS as negative control, separately. Results: Western blot analysis confirmed the interaction between the immunized mice serum and the blotted recombinant protein GST-PDHB-P80, demonstrating the immunogenicity of this protein. Moreover, the sera of vaccinated mice with inactivated bacteria vaccine, containing whole cell proteins, detected the recombinant protein GST-PDHB-P80 confirming the antigenicity of PDHB-P80. Negative control displayed no reactivity with GST-PDHB-P80. Conclusion: We proposed a novel designed chimeric protein of Mycoplasma agalactiae as a potential marker for serodiagnostic assays but still further field research is required.
MeSH term(s)	Female ; Animals ; Mice ; Bacterial Proteins ; Mycoplasma agalactiae/genetics ; Recombinant Proteins ; Recombinant Fusion Proteins ; Mycoplasma Infections/diagnosis ; Mycoplasma Infections/veterinary ; Antigens ; Vaccines
Chemical Substances	Bacterial Proteins ; Recombinant Proteins ; Recombinant Fusion Proteins ; Antigens ; Vaccines
Language	English
Publishing date	2022-12-29
Publishing country	England
Document type	Journal Article
ZDB-ID	2191675-5
ISSN	1746-6148 ; 1746-6148
ISSN (online)	1746-6148
ISSN	1746-6148
DOI	10.1186/s12917-022-03558-0
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Article ; Online: A novel fusion protein candidate for the serodiagnosis of Mycoplasma agalactiae infection

Akbarzadeh-Niaki, Malihe / Derakhshandeh, Abdollah / Kazemipour, Nasrin / Hemmatzadeh, Farhid

BMC Vet Res. 2022 Dec., v. 18, no. 1 p.456-456

2022

Abstract: BACKGROUND: The aim of current study was to construct, express, purify and immunogenicity evaluate of a novel recombinant fusion protein including Pyruvate dehydrogenase beta subunit (PDHB) and high antigenic region of lipoprotein P80 of Mycoplasma ... ...

Abstract	BACKGROUND: The aim of current study was to construct, express, purify and immunogenicity evaluate of a novel recombinant fusion protein including Pyruvate dehydrogenase beta subunit (PDHB) and high antigenic region of lipoprotein P80 of Mycoplasma agalactiae. Using bioinformatics tools, antigenicity and physiochemical properties of fused protein were assessed. MATERIAL AND METHODS: The recombinant fusion protein of GST-PDHB-P80 were expressed in pGEX4T-1 and purified then verified by Western blot assay. The purified protein was successfully used for immunization of mice. 30 female BALB/c mice were divided into three groups (10 mice per each group) injected with GST-PDHB-P80, inactivated bacteria vaccine and PBS as negative control, separately. RESULTS: Western blot analysis confirmed the interaction between the immunized mice serum and the blotted recombinant protein GST-PDHB-P80, demonstrating the immunogenicity of this protein. Moreover, the sera of vaccinated mice with inactivated bacteria vaccine, containing whole cell proteins, detected the recombinant protein GST-PDHB-P80 confirming the antigenicity of PDHB-P80. Negative control displayed no reactivity with GST-PDHB-P80. CONCLUSION: We proposed a novel designed chimeric protein of Mycoplasma agalactiae as a potential marker for serodiagnostic assays but still further field research is required.
Keywords	Mycoplasma agalactiae ; Western blotting ; bioinformatics ; blood serum ; females ; immunization ; immunogenicity ; lipoproteins ; pyruvate dehydrogenase (lipoamide) ; recombinant fusion proteins ; serodiagnosis ; vaccines
Language	English
Dates of publication	2022-12
Size	p. 456.
Publishing place	BioMed Central
Document type	Article ; Online
ZDB-ID	2191675-5
ISSN	1746-6148
ISSN	1746-6148
DOI	10.1186/s12917-022-03558-0
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Article: A novel phage‐displayed MilA ELISA for detection of antibodies against Myc. bovis in bovine milk

Farzaneh, Mina / Derakhshandeh, Abdollah / Al‐Farha, Abd Al‐Bar Ahmed / Petrovski, Kiro / Hemmatzadeh, Farhid

Journal of applied microbiology. 2022 Sept., v. 133, no. 3

2022

Abstract: AIMS: The aim of this study was to assess a phage‐displayed MilA protein of Myc. bovis in an indirect ELISA for the detection of Myc. bovis antibodies in milk samples. METHODS AND RESULTS: The desired sequence of milA gene was synthesized and cloned into ...

Abstract	AIMS: The aim of this study was to assess a phage‐displayed MilA protein of Myc. bovis in an indirect ELISA for the detection of Myc. bovis antibodies in milk samples. METHODS AND RESULTS: The desired sequence of milA gene was synthesized and cloned into pCANTAB‐F12 phagemid vector. The expression of the MilA on the phage surface was confirmed by Western blotting. The recombinant phage was used in the development of an indirect ELISA to detect Myc. bovis antibodies in milk samples. There was a significant agreement between the results of phage‐based ELISA and recombinant GST‐MilA ELISA for the detection of Myc. bovis antibodies in milk samples. CONCLUSIONS: The inexpensive and convenient phage‐based ELISA can be used instead of recombinant protein/peptide ELISA as an initial screening of Myc. bovis‐associated mastitis. SIGNIFICANCE AND IMPACT OF STUDY: Mastitis associated with Myc. bovis is a continuous and serious problem in the dairy industry. Sero‐monitoring of Myc. bovis infection cases are one of the key factors for surveillance of the infections in dairy farms. Despite the existence of some commercially serological assays for Myc. bovis antibodies, they have some limitations regarding their sensitivity and availability. The development of accurate diagnosis tools could contribute to control programmes of Myc. bovis‐associated mastitis in the dairy herds.
Keywords	bacteriophages ; dairy industry ; genes ; mastitis ; milk ; monitoring ; peptides ; recombinant proteins
Language	English
Dates of publication	2022-09
Size	p. 1496-1505.
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	1358023-1
ISSN	1365-2672 ; 1364-5072
ISSN (online)	1365-2672
ISSN	1364-5072
DOI	10.1111/jam.15655
Database	NAL-Catalogue (AGRICOLA)

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Article: Direct endoscopic lavage and biopsy sampling and evaluation of uterine microflora in various stages of the canine estrous cycle.

Mogheiseh, Asghar / Derakhshandeh, Abdollah / Heidarifar, Sara / Bandariyan, Esmaeil

Veterinary research forum : an international quarterly journal

2020 Volume 11, Issue 1, Page(s) 89–92

Abstract: The microbial population of the uterus fluctuates during the estrous cycle. Microflora of uterus may affect the establishment and maintenance of pregnancy in bitches. The endoscopic samples obtained from the vagina and uterus of 20 female adult ... ...

Abstract	The microbial population of the uterus fluctuates during the estrous cycle. Microflora of uterus may affect the establishment and maintenance of pregnancy in bitches. The endoscopic samples obtained from the vagina and uterus of 20 female adult mixedbreed dogs. The uterine lavage samples were prepared for cytology, bacterial (aerobic and anaerobic) and fungal cultures. Uterine tissue samples were evaluated for the presence of
Language	English
Publishing date	2020-03-15
Publishing country	Iran
Document type	Journal Article
ISSN	2008-8140
ISSN	2008-8140
DOI	10.30466/vrf.2019.92195.2231
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Article ; Online: Abundance of antibiotic resistance genes in bacteria and bacteriophages isolated from wastewater in Shiraz.

Zare, Sahar / Derakhshandeh, Abdollah / Mohammadi, Ali / Noshadi, Masoud

Molecular biology research communications

2020 Volume 10, Issue 2, Page(s) 73–83

Abstract: Generally, the high widespread presence of antimicrobial resistance, and the next freeing into aquatic environments which provide a situation for transmission of these genes in water is because of the abuse of the antimicrobial drugs in both medicine and ...

Abstract	Generally, the high widespread presence of antimicrobial resistance, and the next freeing into aquatic environments which provide a situation for transmission of these genes in water is because of the abuse of the antimicrobial drugs in both medicine and veterinary medicine. In aquatic environment, bacteriophages could have an important role in sharing antimicrobial resistance genes. The purpose of this study was to assess three important antibiotic resistance genes including two β-lactamases (blaTEM, blaSHV) and sul1 gene, referring to resistance to sulfonamides, in both bacteria and phage DNA fractions of wastewater samples, Shiraz, Iran, using polymerase chain reaction. The prevalence of those genes was extremely high and equal to 100% in bacterial DNA, while these rates were lower in phage DNA fractions as 66.66%, 66.66% and 58.33% for blaTEM, blaSHV and sul1, respectively. In conclusion, detection of mentioned genes in bacterial and phage DNA fractions from ambient water is considerable, so the possibility of harbouring and transferring of antibiotic resistance genes by phages needs to be explored in the future. Also, available data is a reputable endorsement that wastewater is a hotspot for these kinds of genes to spread in the environment. Based on our knowledge, this is the first report of blaTEM and bla SHV and sul1 genes in bacterial and phage DNA fractions insulated from urban wastewater and environment in Iran.
Language	English
Publishing date	2020-09-02
Publishing country	Iran
Document type	Journal Article
ISSN	2345-2005
ISSN (online)	2345-2005
DOI	10.22099/mbrc.2021.39468.1584
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Article ; Online: Prevalence, virulence factor and antimicrobial resistance analysis of Salmonella Enteritidis from poultry and egg samples in Iran.

Bahramianfard, Hassan / Derakhshandeh, Abdollah / Naziri, Zahra / Khaltabadi Farahani, Reza

BMC veterinary research

2021 Volume 17, Issue 1, Page(s) 196

Abstract: Background: Salmonella enterica serovar Enteritidis (S. Enteritidis) is one of the most common serovars, associated with human salmonellosis. The food-borne outbreak of this bacterium is mainly related to the consumption of contaminated poultry meat and ...

Abstract	Background: Salmonella enterica serovar Enteritidis (S. Enteritidis) is one of the most common serovars, associated with human salmonellosis. The food-borne outbreak of this bacterium is mainly related to the consumption of contaminated poultry meat and poultry products, including eggs. Therefore, rapid and accurate detection, besides investigation of virulence characteristics and antimicrobial resistance profiles of S. Enteritidis in poultry and poultry egg samples is essential. A total of 3125 samples (2250 poultry and 875 poultry egg samples), sent to the administrative centers of veterinary microbiology laboratories in six provinces of Iran, were examined for Salmonella contamination, according to the ISO 6579 guideline. Next, duplex PCR was conducted on 250 presumptive Salmonella isolates to detect invA gene for identification of the genus Salmonella and sdf gene for identification of S. Enteritidis. Subsequently, the S. Enteritidis isolates were examined for detection of important virulence genes (pagC, cdtB, msgA, spaN, tolC, lpfC, and spvC) and determination of antibiotic resistance patterns against nalidixic acid, trimethoprim-sulfamethoxazole, cephalothin, ceftazidime, colistin sulfate, and kanamycin by the disk diffusion method. Results: Overall, 8.7 and 2.3% of poultry samples and 6.3 and 1.3% of eggs were contaminated with Salmonella species and S. Enteritidis, respectively. The invA and msgA genes (100%) and cdtB gene (6.3%) had the highest and the lowest prevalence rates in S. Enteritidis isolates. The spvC gene, which is mainly located on the Salmonella virulence plasmid, was detected in 50.8% of S. Enteritidis isolates. The S. Enteritidis isolates showed the highest and the lowest resistance to nalidixic acid (87.3%) and ceftazidime (11.1%), respectively. Unfortunately, 27.0% of S. Enteritidis isolates were multidrug-resistant (MDR). Conclusion: The rate of contamination with Salmonella in the poultry and egg samples, besides the presence of antimicrobial resistant and MDR Salmonella isolates harboring the virulence genes in these samples, could significantly affect food safety and subsequently, human health. Therefore, continuous monitoring of animal-source foods, enhancement of poultry farm control measures, and limiting the use of antibiotics for prophylactic purposes in food producing animals, are essential for reducing the zoonotic risk of this foodborne pathogen for consumers and also choosing effective antibiotics for the treatment of salmonellosis.
MeSH term(s)	Animals ; Anti-Bacterial Agents/pharmacology ; Drug Resistance, Bacterial/genetics ; Eggs/microbiology ; Genes, Bacterial ; Genotype ; Iran ; Microbial Sensitivity Tests/veterinary ; Phenotype ; Poultry/microbiology ; Poultry Products/microbiology ; Prevalence ; Salmonella enteritidis/drug effects ; Salmonella enteritidis/genetics ; Salmonella enteritidis/isolation & purification ; Salmonella enteritidis/pathogenicity ; Virulence/genetics
Chemical Substances	Anti-Bacterial Agents
Language	English
Publishing date	2021-05-24
Publishing country	England
Document type	Journal Article
ISSN	1746-6148
ISSN (online)	1746-6148
DOI	10.1186/s12917-021-02900-2
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