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  1. Book ; Online ; E-Book: Biofortification in cereals

    Deshmukh, Rupesh

    progress and prospects

    2023  

    Author's details Rupesh Deshmukh [und 4 weitere], editors
    Keywords Electronic books
    Language English
    Size 1 Online-Ressource (xiv, 384 Seiten), Illustrationen
    Publisher Springer
    Publishing place Singapore
    Publishing country Singapore
    Document type Book ; Online ; E-Book
    Note Description based on publisher supplied metadata and other sources
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    HBZ-ID HT021861710
    ISBN 978-981-19430-8-9 ; 9789811943072 ; 981-19430-8-7 ; 9811943079
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  2. Book ; Online ; E-Book: Advances in agri-food biotechnology

    Sharma, Tilak Raj / Deshmukh, Rupesh / Sonah, Humira

    2020  

    Author's details Tilak Raj Sharma, Rupesh Deshmukh, Humira Sonah, editors
    Keywords Agriculture ; Microbiology ; Plant physiology ; Plant breeding
    Subject code 630
    Language English
    Size 1 Online-Ressource (VII, 450 Seiten)
    Publisher Springer
    Publishing place Singapore
    Publishing country Singapore
    Document type Book ; Online ; E-Book
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    HBZ-ID HT021094994
    ISBN 978-981-15-2874-3 ; 9789811528736 ; 9789811528750 ; 9789811528767 ; 981-15-2874-8 ; 981152873X ; 9811528756 ; 9811528764
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  3. Book ; Online ; E-Book: Metalloids in plants

    Deshmukh, Rupesh / Tripathi, Durgesh Kumar / Guerriero, Gea

    advances and future prospects

    2020  

    Author's details edited by Rupesh Deshmukh, Durgesh K. Tripathi, Gea Guerriero
    Keywords Electronic books
    Language English
    Size 1 Online-Ressource (xiv, 501 Seiten), Illustrationen
    Publisher Wiley
    Publishing place Hoboken, NJ
    Publishing country United States
    Document type Book ; Online ; E-Book
    Note Description based on publisher supplied metadata and other sources
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    HBZ-ID HT020548293
    ISBN 978-1-119-48718-0 ; 9781119487197 ; 1-119-48718-8 ; 1119487196
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  4. Book ; Online: Aquaporins: Dynamic Role and Regulation

    Belanger, Richard R. / Nguyen, Henry T. / Deshmukh, Rupesh K.

    2017  

    Abstract: Aquaporins (AQPs), a class of integral membrane proteins, form channels facilitating movement of water and many other solutes. In solute transport systems of all living organisms including plants, animals and fungi, AQPs play a vital role. Plants contain ...

    Abstract Aquaporins (AQPs), a class of integral membrane proteins, form channels facilitating movement of water and many other solutes. In solute transport systems of all living organisms including plants, animals and fungi, AQPs play a vital role. Plants contain a much higher number of AQP genes compared to animals, the likely consequence of genome duplication events and higher ploidy levels. As a result of duplication and subsequent diversification, plant AQPs have evolved several subfamilies with very diverse functions. Plant AQPs are highly selective for specific solutes because of their unique structural features. For instance, ar/R selectivity filters and NPA domains have been found to be key elements in governing solute permeability through the AQP channels. Combination of conserved motifs and specific amino acids influencing pore morphology appears to regulate the permeability of specific solutes such as water, urea, CO2, H2O2, boric acid, silicic acid and many more.-

    The discovery of novel AQPs has been accelerated over the last few years with the increasing availability of genomic and transcriptomic data. The expanding number of well characterised AQPs provides opportunities to understand factors influencing water transport, nutritional uptake, and elemental balance. Homology-based search tools and phylogenetic analyses offer efficient strategies for AQP identification. Subsequent characterization can be based on different approaches involving proteomics, genomics, and transcriptomic tools. The combination of these technological advances make it possible to efficiently study the inter-dependency of AQPs, regulation through phosphorylation and reversible phosphorylation, networking with other transporters, structural features, pH gating systems, trafficking and degradation. Several studies have supported the role of AQPs in differential phenotypic responses to abiotic and biotic stress in plants.-

    Crop improvement programs aiming for the development of cultivars with higher tolerance against stresses like drought, flooding, salinity and many biotic diseases, can explore and exploit the finely tuned AQP-regulated transport system. For instance, a promising approach in crop breeding programs is the utilization of genetic variation in AQPs for the development of stress tolerant cultivars. Similarly, transgenic and mutagenesis approaches provide an opportunity to better understand the AQP transport system with subsequent applications for the development of climate-smart drought-tolerant cultivars. The contributions to this Frontiers in Plant Science Research Topic have highlighted the evolution and phylogenetic distribution of AQPs in several plant species. Numerous aspects of regulation that seek to explain AQP-mediated transport system have been addressed.-
    Keywords Science (General) ; Botany ; Physiology
    Size 1 electronic resource (183 p.)
    Publisher Frontiers Media SA
    Document type Book ; Online
    Note English ; Open Access
    HBZ-ID HT020097428
    ISBN 9782889452897 ; 2889452891
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  5. Book ; Online: Role of Silicon in Plants

    Belanger, Richard R. / Ma, Jian Feng / Deshmukh, Rupesh K.

    2017  

    Abstract: Silicon (Si) is gaining increased attention in the farming sector because of its beneficial effects observed in several crop species, particularly under stress conditions. The magnitude of benefits is predominantly observed in plant species that can ... ...

    Abstract Silicon (Si) is gaining increased attention in the farming sector because of its beneficial effects observed in several crop species, particularly under stress conditions. The magnitude of benefits is predominantly observed in plant species that can accumulate Si above a certain threshold. Therefore, deciphering the molecular mechanisms and genetic factors conferring a plant ability to take up silicon is necessary. Along these lines, several efforts have been made to identify the specific genes regulating Si uptake and distribution in plant tissues. This information finds its usefulness in identifying Si-competent species, and could eventually lead to improving this ability in low-accumulating species. The successful exploitation of Si in agriculture depends highly on the understanding of different Si properties including plant-available Si from the soil, transport within tissues, deposition in planta, and Si effect on different metabolic and physiological processes. In addition, a better comprehension of external factors influencing Si uptake and deposition in plant tissue remains important. A plant can take up Si efficiently only in the form of silicic acid and most soils, despite containing high concentrations of Si, are deficient in plant-available Si. Consequently, soil amendment with fertilizers rich in plant-available Si is now viewed as an affordable option to protect plants from the biotic and abiotic stresses and achieve more sustainable cropping management worldwide. Articles compiled in the present research topic touch upon several aspects of Si properties and functionality in plants. The information will be helpful to further our understanding of the role of Si and contribute to exploit the benefits plants derive from it
    Keywords Science (General) ; Botany
    Size 1 electronic resource (186 p.)
    Publisher Frontiers Media SA
    Document type Book ; Online
    Note English ; Open Access
    HBZ-ID HT020097482
    ISBN 9782889453528 ; 2889453529
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  6. Article ; Online: Prime Editing in Plants: Prospects and Challenges.

    Vats, Sanskriti / Kumar, Jitesh / Sonah, Humira / Zhang, Feng / Deshmukh, Rupesh

    Journal of experimental botany

    2024  

    Abstract: Prime editors are reverse transcriptase (RT)-based genome editing tools utilizing double strand break (DSB) free mechanisms to decrease off-target editing in genomes and enhance the efficiency of targeted insertions. Multiple prime editors developed ... ...

    Abstract Prime editors are reverse transcriptase (RT)-based genome editing tools utilizing double strand break (DSB) free mechanisms to decrease off-target editing in genomes and enhance the efficiency of targeted insertions. Multiple prime editors developed within a short span of time are a testament to the potential of this technique for targeted insertions. This is mainly because of the possibility of generation of all types of mutations including deletions, insertions, transitions and transversions. Prime editing reverses several bottlenecks of gene editing technologies that limit the biotechnological applicability to produce designer crops. The current mini review evaluates the status and evolution of prime editing technique in terms of the types of prime editors available till date up to prime editor 5 and twin prime editors, and the developments in plants in a systematic manner. The various factors affecting prime editing efficiency in plants including the effect of temperature, the pegRNA, and RT template amongst others are discussed in detail. We discuss the obstructions, key challenges, available resolutions, and provide future directions and further improvements feasible to elevate the efficiency in plants.
    Language English
    Publishing date 2024-02-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2976-2
    ISSN 1460-2431 ; 0022-0957
    ISSN (online) 1460-2431
    ISSN 0022-0957
    DOI 10.1093/jxb/erae053
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Editorial: RNA plasticity: novel structures, shapes, modifications, and functions.

    Kadam, Ulhas S / Deshmukh, Rupesh / Tian, Li

    Frontiers in plant science

    2023  Volume 14, Page(s) 1265867

    Language English
    Publishing date 2023-09-11
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1265867
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Opportunities and challenges with CRISPR-Cas mediated homologous recombination based precise editing in plants and animals

    Surender Singh / Chaudhary, Roni / Deshmukh, Rupesh / Tiwari, Siddharth

    Plant Mol Biol. 2023 Jan., v. 111, no. 1-2 p.1-20

    2023  

    Abstract: KEY MESSAGE: We summarise recent advancements to achieve higher homologous recombination based gene targeting efficiency in different animals and plants. The genome editing has revolutionized the agriculture and human therapeutic sectors by its ability ... ...

    Abstract KEY MESSAGE: We summarise recent advancements to achieve higher homologous recombination based gene targeting efficiency in different animals and plants. The genome editing has revolutionized the agriculture and human therapeutic sectors by its ability to create precise, stable and predictable mutations in the genome. It depends upon targeted double-strand breaks induction by the engineered endonucleases, which then gets repaired by highly conserved endogenous DNA repair mechanisms. The repairing could be done either through non-homologous end joining (NHEJ) or homology-directed repair (HDR) pathways. The HDR-based editing can be applied for precise gene targeting such as insertion of a new gene, gene replacement and altering of the regulatory sequence of a gene to control the existing protein expression. However, HDR-mediated editing is considered challenging because of lower efficiency in higher eukaryotes, thus, preventing its widespread application. This article reviews the recent progress of HDR-mediated editing and discusses novel strategies such as cell cycle synchronization, modulation of DNA damage repair factors, engineering of Cas protein favoring HDR and CRISPR-Cas reagents delivery methods to improve efficiency for generating knock-in events in both plants and animals. Further, multiplexing of described methods may be promising towards achieving higher donor template-assisted homologous recombination efficiency at the target locus.
    Keywords CRISPR-Cas systems ; DNA repair ; cell cycle ; eukaryotic cells ; genes ; homologous recombination ; humans ; loci ; protein synthesis ; therapeutics
    Language English
    Dates of publication 2023-01
    Size p. 1-20.
    Publishing place Springer Netherlands
    Document type Article ; Online
    Note Review
    ZDB-ID 778032-1
    ISSN 1573-5028 ; 0167-4412
    ISSN (online) 1573-5028
    ISSN 0167-4412
    DOI 10.1007/s11103-022-01321-5
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: Opportunities and challenges with CRISPR-Cas mediated homologous recombination based precise editing in plants and animals.

    Singh, Surender / Chaudhary, Roni / Deshmukh, Rupesh / Tiwari, Siddharth

    Plant molecular biology

    2022  Volume 111, Issue 1-2, Page(s) 1–20

    Abstract: Key message: We summarise recent advancements to achieve higher homologous recombination based gene targeting efficiency in different animals and plants. The genome editing has revolutionized the agriculture and human therapeutic sectors by its ability ... ...

    Abstract Key message: We summarise recent advancements to achieve higher homologous recombination based gene targeting efficiency in different animals and plants. The genome editing has revolutionized the agriculture and human therapeutic sectors by its ability to create precise, stable and predictable mutations in the genome. It depends upon targeted double-strand breaks induction by the engineered endonucleases, which then gets repaired by highly conserved endogenous DNA repair mechanisms. The repairing could be done either through non-homologous end joining (NHEJ) or homology-directed repair (HDR) pathways. The HDR-based editing can be applied for precise gene targeting such as insertion of a new gene, gene replacement and altering of the regulatory sequence of a gene to control the existing protein expression. However, HDR-mediated editing is considered challenging because of lower efficiency in higher eukaryotes, thus, preventing its widespread application. This article reviews the recent progress of HDR-mediated editing and discusses novel strategies such as cell cycle synchronization, modulation of DNA damage repair factors, engineering of Cas protein favoring HDR and CRISPR-Cas reagents delivery methods to improve efficiency for generating knock-in events in both plants and animals. Further, multiplexing of described methods may be promising towards achieving higher donor template-assisted homologous recombination efficiency at the target locus.
    MeSH term(s) Animals ; Humans ; CRISPR-Cas Systems ; Gene Editing/methods ; Homologous Recombination ; DNA Repair/genetics ; Recombinational DNA Repair ; DNA End-Joining Repair
    Language English
    Publishing date 2022-10-31
    Publishing country Netherlands
    Document type Journal Article ; Review
    ZDB-ID 778032-1
    ISSN 1573-5028 ; 0167-4412
    ISSN (online) 1573-5028
    ISSN 0167-4412
    DOI 10.1007/s11103-022-01321-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Silicon, a quasi-essential element: Availability in soil, fertilizer regime, optimum dosage, and uptake in plants.

    Thakral, Vandana / Raturi, Gaurav / Sudhakaran, Sreeja / Mandlik, Rushil / Sharma, Yogesh / Shivaraj, S M / Tripathi, Durgesh Kumar / Sonah, Humira / Deshmukh, Rupesh

    Plant physiology and biochemistry : PPB

    2024  Volume 208, Page(s) 108459

    Abstract: The essentiality of silicon (Si) has always been a matter of debate as it is not considered crucial for the lifecycles of most plants. But beneficial effects of endogenous Si and its supplementation have been observed in many plants. Silicon plays a ... ...

    Abstract The essentiality of silicon (Si) has always been a matter of debate as it is not considered crucial for the lifecycles of most plants. But beneficial effects of endogenous Si and its supplementation have been observed in many plants. Silicon plays a pivotal role in alleviating the biotic and abiotic stress in plants by acting as a physical barrier as well as affecting molecular pathways involved in stress tolerance, thus widely considered as "quasi-essential". In soil, most of Si is found in complex forms as mineral silicates which is not available for plant uptake. Monosilicic acid [Si(OH)
    MeSH term(s) Fertilizers ; Silicon/pharmacology ; Soil/chemistry ; Biological Transport ; Plants/metabolism ; Minerals/metabolism
    Chemical Substances Fertilizers ; Silicon (Z4152N8IUI) ; Soil ; Minerals
    Language English
    Publishing date 2024-02-22
    Publishing country France
    Document type Journal Article ; Review
    ZDB-ID 742978-2
    ISSN 1873-2690 ; 0981-9428
    ISSN (online) 1873-2690
    ISSN 0981-9428
    DOI 10.1016/j.plaphy.2024.108459
    Database MEDical Literature Analysis and Retrieval System OnLINE

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