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  1. Article ; Online: Structural diversity of p63 and p73 isoforms.

    Osterburg, Christian / Dötsch, Volker

    Cell death and differentiation

    2022  Volume 29, Issue 5, Page(s) 921–937

    Abstract: The p53 protein family is the most studied protein family of all. Sequence analysis and structure determination have revealed a high similarity of crucial domains between p53, p63 and p73. Functional studies, however, have shown a wide variety of ... ...

    Abstract The p53 protein family is the most studied protein family of all. Sequence analysis and structure determination have revealed a high similarity of crucial domains between p53, p63 and p73. Functional studies, however, have shown a wide variety of different tasks in tumor suppression, quality control and development. Here we review the structure and organization of the individual domains of p63 and p73, the interaction of these domains in the context of full-length proteins and discuss the evolutionary origin of this protein family. FACTS: Distinct physiological roles/functions are performed by specific isoforms. The non-divided transactivation domain of p63 has a constitutively high activity while the transactivation domains of p53/p73 are divided into two subdomains that are regulated by phosphorylation. Mdm2 binds to all three family members but ubiquitinates only p53. TAp63α forms an autoinhibited dimeric state while all other vertebrate p53 family isoforms are constitutively tetrameric. The oligomerization domain of p63 and p73 contain an additional helix that is necessary for stabilizing the tetrameric states. During evolution this helix got lost independently in different phylogenetic branches, while the DNA binding domain became destabilized and the transactivation domain split into two subdomains. OPEN QUESTIONS: Is the autoinhibitory mechanism of mammalian TAp63α conserved in p53 proteins of invertebrates that have the same function of genomic quality control in germ cells? What is the physiological function of the p63/p73 SAM domains? Do the short isoforms of p63 and p73 have physiological functions? What are the roles of the N-terminal elongated TAp63 isoforms, TA* and GTA?
    MeSH term(s) Animals ; DNA-Binding Proteins/metabolism ; Mammals/metabolism ; Nuclear Proteins/metabolism ; Phylogeny ; Protein Isoforms/genetics ; Protein Isoforms/metabolism ; Tumor Protein p73/metabolism ; Tumor Suppressor Protein p53/metabolism ; Tumor Suppressor Proteins/genetics ; Tumor Suppressor Proteins/metabolism
    Chemical Substances DNA-Binding Proteins ; Nuclear Proteins ; Protein Isoforms ; Tumor Protein p73 ; Tumor Suppressor Protein p53 ; Tumor Suppressor Proteins
    Language English
    Publishing date 2022-03-21
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 1225672-9
    ISSN 1476-5403 ; 1350-9047
    ISSN (online) 1476-5403
    ISSN 1350-9047
    DOI 10.1038/s41418-022-00975-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online ; Thesis: Novel functions of LUBAC-mediated M1 poly-ubiquitination in TNFR1-mediated necroptosis

    Weinelt, Nadine [Verfasser] / Dötsch, Volker [Gutachter] / Wijk, Sjoerd van [Gutachter]

    2024  

    Author's details Nadine Weinelt ; Gutachter: Volker Dötsch, Sjoerd van Wijk
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitätsbibliothek Johann Christian Senckenberg
    Publishing place Frankfurt am Main
    Document type Book ; Online ; Thesis
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  3. Book ; Online ; Thesis: The role of USP22 in nucleic acid sensing pathways and interferon-induced necroptotic cell death

    Karlowitz, Rebekka [Verfasser] / Dötsch, Volker [Gutachter] / Wijk, Sjoerd van [Gutachter]

    2024  

    Author's details Rebekka Karlowitz ; Gutachter: Volker Dötsch, Sjoerd van Wijk
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitätsbibliothek Johann Christian Senckenberg
    Publishing place Frankfurt am Main
    Document type Book ; Online ; Thesis
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  4. Article ; Online: Cell-Free Expression of GPCRs into Nanomembranes for Functional and Structural Studies.

    Umbach, Simon / Dötsch, Volker / Bernhard, Frank

    Methods in molecular biology (Clifton, N.J.)

    2022  Volume 2507, Page(s) 405–424

    Abstract: Despite their importance in many essential physiological processes of living cells, G protein-coupled receptors (GPCRs) are often difficult to express and purify in sufficient quality and quantity. We demonstrate cell-free protein synthesis as an ... ...

    Abstract Despite their importance in many essential physiological processes of living cells, G protein-coupled receptors (GPCRs) are often difficult to express and purify in sufficient quality and quantity. We demonstrate cell-free protein synthesis as an interesting alternative to classical cell-based expression systems. We focus on a recently developed detergent-free expression mode by co-translational integration of nascent GPCRs into provided nanodisc membranes of defined composition. The protocol is in particular suitable for detergent sensitive targets and allows the synthesis of full-length as well as modified GPCRs. As a basic blueprint for the cell-free synthesis of GPCRs and potentially other membrane proteins as well, we describe the production of the human endothelin-B receptor. Subsequent purification strategies are streamlined by implementing complementary affinity chromatography steps. We further show the evaluation and optimization of the final GPCR samples for homogeneity and activity through a radioligand binding assay.
    MeSH term(s) Cell-Free System/metabolism ; Humans ; Protein Biosynthesis ; Radioligand Assay ; Receptors, G-Protein-Coupled/chemistry
    Chemical Substances Receptors, G-Protein-Coupled
    Language English
    Publishing date 2022-06-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-2368-8_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online ; Thesis: Structural and functional insights into the citrate transporter SeCitS

    Grötzinger, Maria Johanna [Verfasser] / Dötsch, Volker [Gutachter] / Kühlbrandt, Werner [Gutachter]

    2023  

    Author's details Maria Johanna Grötzinger ; Gutachter: Volker Dötsch, Werner Kühlbrandt
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitätsbibliothek Johann Christian Senckenberg
    Publishing place Frankfurt am Main
    Document type Book ; Online ; Thesis
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  6. Book ; Online ; Thesis: USP22 controls tumorigenicity by regulating interferon responses and the stability of the tumor suppressor PML

    Kowald, Lisa [Verfasser] / Dötsch, Volker [Gutachter] / Wijk, Sjoerd van [Gutachter]

    2023  

    Author's details Lisa Kowald ; Gutachter: Volker Dötsch, Sjoerd van Wijk
    Keywords Medizin, Gesundheit ; Medicine, Health
    Subject code sg610
    Language English
    Publisher Universitätsbibliothek Johann Christian Senckenberg
    Publishing place Frankfurt am Main
    Document type Book ; Online ; Thesis
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  7. Article ; Online: Mechanisms of quality control differ in male and female germ cells.

    Candi, Eleonora / Melino, Gerry / Tóth, Attila / Dötsch, Volker

    Cell death and differentiation

    2021  Volume 28, Issue 7, Page(s) 2300–2302

    MeSH term(s) Animals ; Female ; Germ Cells ; Humans ; Male ; Quality Control
    Language English
    Publishing date 2021-06-15
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1225672-9
    ISSN 1476-5403 ; 1350-9047
    ISSN (online) 1476-5403
    ISSN 1350-9047
    DOI 10.1038/s41418-021-00818-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Applications of Cell-Free Synthesized Membrane Protein Precipitates.

    Mezhyrova, Julija / Mörs, Karsten / Glaubitz, Clemens / Dötsch, Volker / Bernhard, Frank

    Methods in molecular biology (Clifton, N.J.)

    2022  Volume 2406, Page(s) 245–266

    Abstract: Cell-free protein expression systems are new core platforms for membrane protein synthesis. Expression in the presence of supplied artificial hydrophobic environments such as nanomembranes or micelles allows the co-translational solubilization and ... ...

    Abstract Cell-free protein expression systems are new core platforms for membrane protein synthesis. Expression in the presence of supplied artificial hydrophobic environments such as nanomembranes or micelles allows the co-translational solubilization and folding of membrane proteins. In the absence of hydrophobic compounds, the synthesized membrane proteins quantitatively precipitate, while frequently still retaining a significant part of folded structural elements. This so-called precipitate-forming cell-free (P-CF) expression mode is a very effective and reliable approach for numerous applications. Even from complex membrane proteins such as G-protein coupled receptors or large transporters, significant amounts of such precipitates can be synthesized within few hours. The precipitates can be solubilized in detergents or reconstituted into membranes for subsequent structural or functional analysis. Harsh denaturation and refolding procedures as known from the treatment of bacterial inclusion bodies are usually not required.This strategy is particularly interesting for applications requiring large amounts of membrane protein or fast access to a sample. It is further an excellent tool for the production of membrane protein antigens suitable for antibody generation. The purification of the precipitates in downstream processing is streamlined as only few proteins from the cell-free lysate may co-precipitate with the synthesized membrane protein. For most applications, a one-step affinity chromatography by taking advantage of small purification tags attached to the membrane protein target is sufficient. We give an overview on current applications of P-CF precipitates and describe the underlying techniques in detail. We furthermore provide protocols for the successful crystallization and NMR analysis of P-CF synthesized membrane proteins exemplified with the diacylglycerol kinase (DAGK). In addition, we describe the functional characterization of a P-CF synthesized large eukaryotic transporter.
    MeSH term(s) Cell-Free System/metabolism ; Detergents/metabolism ; Escherichia coli/metabolism ; Membrane Proteins/metabolism ; Protein Folding ; Protein Processing, Post-Translational
    Chemical Substances Detergents ; Membrane Proteins
    Language English
    Publishing date 2022-01-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-1859-2_15
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: E. coli "Stablelabel" S30 lysate for optimized cell-free NMR sample preparation.

    Levin, Roman / Löhr, Frank / Karakoc, Betül / Lichtenecker, Roman / Dötsch, Volker / Bernhard, Frank

    Journal of biomolecular NMR

    2023  Volume 77, Issue 4, Page(s) 131–147

    Abstract: Cell-free (CF) synthesis with highly productive E. coli lysates is a convenient method to produce labeled proteins for NMR studies. Despite reduced metabolic activity in CF lysates, a certain scrambling of supplied isotope labels is still notable. Most ... ...

    Abstract Cell-free (CF) synthesis with highly productive E. coli lysates is a convenient method to produce labeled proteins for NMR studies. Despite reduced metabolic activity in CF lysates, a certain scrambling of supplied isotope labels is still notable. Most problematic are conversions of
    MeSH term(s) Escherichia coli/metabolism ; Nuclear Magnetic Resonance, Biomolecular/methods ; Amino Acids/chemistry ; Proteins/chemistry ; Protein Biosynthesis ; Isotope Labeling/methods ; Cell-Free System/metabolism
    Chemical Substances Amino Acids ; Proteins
    Language English
    Publishing date 2023-06-13
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1081696-3
    ISSN 1573-5001 ; 0925-2738
    ISSN (online) 1573-5001
    ISSN 0925-2738
    DOI 10.1007/s10858-023-00417-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online ; Thesis: Evaluation of cell death pathways in cancer and inflammation

    Knuth, Anne-Kathrin [Verfasser] / Dötsch, Volker [Gutachter] / Weigert, Andreas [Gutachter]

    2022  

    Author's details Anne-Kathrin Knuth ; Gutachter: Volker Dötsch, Andreas Weigert
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitätsbibliothek Johann Christian Senckenberg
    Publishing place Frankfurt am Main
    Document type Book ; Online ; Thesis
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