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  1. Book ; Online: Scalable Deep Convolutional Neural Networks for Sparse, Locally Dense Liquid Argon Time Projection Chamber Data

    Dominé, Laura / Terao, Kazuhiro

    2019  

    Abstract: Deep convolutional neural networks (CNNs) show strong promise for analyzing scientific data in many domains including particle imaging detectors such as a liquid argon time projection chamber (LArTPC). Yet the high sparsity of LArTPC data challenges ... ...

    Abstract Deep convolutional neural networks (CNNs) show strong promise for analyzing scientific data in many domains including particle imaging detectors such as a liquid argon time projection chamber (LArTPC). Yet the high sparsity of LArTPC data challenges traditional CNNs which were designed for dense data such as photographs. A naive application of CNNs on LArTPC data results in inefficient computations and a poor scalability to large LArTPC detectors such as the Short Baseline Neutrino Program and Deep Underground Neutrino Experiment. Recently Submanifold Sparse Convolutional Networks (SSCNs) have been proposed to address this challenge. We report their performance on a 3D semantic segmentation task on simulated LArTPC samples. In comparison with standard CNNs, we observe that the computation memory and wall-time cost for inference are reduced by factor of 364 and 33 respectively without loss of accuracy. The same factors for 2D samples are found to be 93 and 3.1 respectively. Using SSCN, we present the first machine learning-based approach to the reconstruction of Michel electrons using public 3D LArTPC samples. We find a Michel electron identification efficiency of 93.9% with 96.7% of true positive rate. Reconstructed Michel electron clusters yield 95.4% in average pixel clustering efficiency and 95.5% in purity. The results are compelling to show strong promise of scalable data reconstruction technique using deep neural networks for large scale LArTPC detectors.

    Comment: Corrected URL to dataset Corrected figures and numbers
    Keywords High Energy Physics - Experiment ; Computer Science - Computer Vision and Pattern Recognition
    Subject code 006
    Publishing date 2019-03-13
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Book ; Online: Central Yup'ik and Machine Translation of Low-Resource Polysynthetic Languages

    Liu, Christopher / Dominé, Laura / Chavez, Kevin / Socher, Richard

    2020  

    Abstract: Machine translation tools do not yet exist for the Yup'ik language, a polysynthetic language spoken by around 8,000 people who live primarily in Southwest Alaska. We compiled a parallel text corpus for Yup'ik and English and developed a morphological ... ...

    Abstract Machine translation tools do not yet exist for the Yup'ik language, a polysynthetic language spoken by around 8,000 people who live primarily in Southwest Alaska. We compiled a parallel text corpus for Yup'ik and English and developed a morphological parser for Yup'ik based on grammar rules. We trained a seq2seq neural machine translation model with attention to translate Yup'ik input into English. We then compared the influence of different tokenization methods, namely rule-based, unsupervised (byte pair encoding), and unsupervised morphological (Morfessor) parsing, on BLEU score accuracy for Yup'ik to English translation. We find that using tokenized input increases the translation accuracy compared to that of unparsed input. Although overall Morfessor did best with a vocabulary size of 30k, our first experiments show that BPE performed best with a reduced vocabulary size.
    Keywords Computer Science - Computation and Language
    Subject code 410
    Publishing date 2020-09-08
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Book ; Online: Scalable, End-to-End, Deep-Learning-Based Data Reconstruction Chain for Particle Imaging Detectors

    Drielsma, Francois / Terao, Kazuhiro / Dominé, Laura / Koh, Dae Heun

    2021  

    Abstract: Recent inroads in Computer Vision (CV) and Machine Learning (ML) have motivated a new approach to the analysis of particle imaging detector data. Unlike previous efforts which tackled isolated CV tasks, this paper introduces an end-to-end, ML-based data ... ...

    Abstract Recent inroads in Computer Vision (CV) and Machine Learning (ML) have motivated a new approach to the analysis of particle imaging detector data. Unlike previous efforts which tackled isolated CV tasks, this paper introduces an end-to-end, ML-based data reconstruction chain for Liquid Argon Time Projection Chambers (LArTPCs), the state-of-the-art in precision imaging at the intensity frontier of neutrino physics. The chain is a multi-task network cascade which combines voxel-level feature extraction using Sparse Convolutional Neural Networks and particle superstructure formation using Graph Neural Networks. Each algorithm incorporates physics-informed inductive biases, while their collective hierarchy is used to enforce a causal structure. The output is a comprehensive description of an event that may be used for high-level physics inference. The chain is end-to-end optimizable, eliminating the need for time-intensive manual software adjustments. It is also the first implementation to handle the unprecedented pile-up of dozens of high energy neutrino interactions, expected in the 3D-imaging LArTPC of the Deep Underground Neutrino Experiment. The chain is trained as a whole and its performance is assessed at each step using an open simulated data set.

    Comment: Third Workshop on Machine Learning and the Physical Sciences (NeurIPS 2020), Vancouver, Canada
    Keywords High Energy Physics - Experiment ; Computer Science - Computer Vision and Pattern Recognition
    Subject code 006
    Publishing date 2021-02-01
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article: Sénescence de l'organe pulpo-dentinaire humain.

    Domine, L / Holz, J

    Schweizer Monatsschrift fur Zahnmedizin = Revue mensuelle suisse d'odonto-stomatologie = Rivista mensile svizzera di odontologia e stomatologia

    1991  Volume 101, Issue 6, Page(s) 725–733

    Abstract: 239 noncarious human teeth, freshly extracted (from patients aged 10 to 78 years), were prepared in order to examine microscopically the effects of aging on the pulp-dentinal complex at crown and root level. Microscopical observations included the ... ...

    Title translation The aging of the human pulp-dentin organ.
    Abstract 239 noncarious human teeth, freshly extracted (from patients aged 10 to 78 years), were prepared in order to examine microscopically the effects of aging on the pulp-dentinal complex at crown and root level. Microscopical observations included the following elements: predentin, odontoblastic layer with capillaries, pulpal volume, fibro-dentin, collagen fibres, blood vessels, cells and pulpal calcifications. Results showed a gradual narrowing of the circumference of the pulp volume with increasing age, due to the continual apposition of dentin. Dystrophic or degenerating calcifications were also noted alongside compression of collagen fibres (giving an appearance of fibrosis). However, the radicular vascularisation is still effective by observing the persistence of an anabolic activity (fibrodentin apposition) at these levels. These findings demonstrate the physiologic and the pathologic evolution of the pulp-dentinal complex.
    MeSH term(s) Adolescent ; Adult ; Aged ; Aging ; Calcinosis/pathology ; Child ; Dental Pulp/anatomy & histology ; Dentin/anatomy & histology ; Female ; Humans ; Male ; Middle Aged ; Tooth Root/anatomy & histology
    Language French
    Publishing date 1991
    Publishing country Switzerland
    Document type English Abstract ; Journal Article
    ZDB-ID 639042-0
    ISSN 0256-2855
    ISSN 0256-2855
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Online: Scalable, Proposal-free Instance Segmentation Network for 3D Pixel Clustering and Particle Trajectory Reconstruction in Liquid Argon Time Projection Chambers

    Koh, Dae Heun / de Soux, Pierre Côte / Dominé, Laura / Drielsma, François / Itay, Ran / Lin, Qing / Terao, Kazuhiro / Tsang, Ka Vang / Usher, Tracy

    2020  

    Abstract: Liquid Argon Time Projection Chambers (LArTPCs) are high resolution particle imaging detectors, employed by accelerator-based neutrino oscillation experiments for high precision physics measurements. While images of particle trajectories are intuitive to ...

    Abstract Liquid Argon Time Projection Chambers (LArTPCs) are high resolution particle imaging detectors, employed by accelerator-based neutrino oscillation experiments for high precision physics measurements. While images of particle trajectories are intuitive to analyze for physicists, the development of a high quality, automated data reconstruction chain remains challenging. One of the most critical reconstruction steps is particle clustering: the task of grouping 3D image pixels into different particle instances that share the same particle type. In this paper, we propose the first scalable deep learning algorithm for particle clustering in LArTPC data using sparse convolutional neural networks (SCNN). Building on previous works on SCNNs and proposal free instance segmentation, we build an end-to-end trainable instance segmentation network that learns an embedding of the image pixels to perform point cloud clustering in a transformed space. We benchmark the performance of our algorithm on PILArNet, a public 3D particle imaging dataset, with respect to common clustering evaluation metrics. 3D pixels were successfully clustered into individual particle trajectories with 90% of them having an adjusted Rand index score greater than 92% with a mean pixel clustering efficiency and purity above 96%. This work contributes to the development of an end-to-end optimizable full data reconstruction chain for LArTPCs, in particular pixel-based 3D imaging detectors including the near detector of the Deep Underground Neutrino Experiment. Our algorithm is made available in the open access repository, and we share our Singularity software container, which can be used to reproduce our work on the dataset.
    Keywords Physics - Instrumentation and Detectors ; Computer Science - Computer Vision and Pattern Recognition ; Electrical Engineering and Systems Science - Image and Video Processing
    Subject code 006
    Publishing date 2020-07-06
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Book ; Online: Clustering of Electromagnetic Showers and Particle Interactions with Graph Neural Networks in Liquid Argon Time Projection Chambers Data

    Drielsma, Francois / Lin, Qing / de Soux, Pierre Côte / Dominé, Laura / Itay, Ran / Koh, Dae Heun / Nelson, Bradley J. / Terao, Kazuhiro / Tsang, Ka Vang / Usher, Tracy L.

    2020  

    Abstract: Liquid Argon Time Projection Chambers (LArTPCs) are a class of detectors that produce high resolution images of charged particles within their sensitive volume. In these images, the clustering of distinct particles into superstructures is of central ... ...

    Abstract Liquid Argon Time Projection Chambers (LArTPCs) are a class of detectors that produce high resolution images of charged particles within their sensitive volume. In these images, the clustering of distinct particles into superstructures is of central importance to the current and future neutrino physics program. Electromagnetic (EM) activity typically exhibits spatially detached fragments of varying morphology and orientation that are challenging to efficiently assemble using traditional algorithms. Similarly, particles that are spatially removed from each other in the detector may originate from a common interaction. Graph Neural Networks (GNNs) were developed in recent years to find correlations between objects embedded in an arbitrary space. The Graph Particle Aggregator (GrapPA) first leverages GNNs to predict the adjacency matrix of EM shower fragments and to identify the origin of showers, i.e. primary fragments. On the PILArNet public LArTPC simulation dataset, the algorithm achieves achieves a shower clustering accuracy characterized by a mean adjusted Rand index (ARI) of 97.8 % and a primary identification accuracy of 99.8 %. It yields a relative shower energy resolution of $(4.1+1.4/\sqrt{E (\text{GeV})})\,\%$ and a shower direction resolution of $(2.1/\sqrt{E(\text{GeV})})^{\circ}$. The optimized algorithm is then applied to the related task of clustering particle instances into interactions and yields a mean ARI of 99.2 % for an interaction density of $\sim\mathcal{O}(1)\,m^{-3}$.
    Keywords Physics - Instrumentation and Detectors ; Computer Science - Computer Vision and Pattern Recognition
    Subject code 006
    Publishing date 2020-07-02
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Book ; Online: Point Proposal Network for Reconstructing 3D Particle Endpoints with Sub-Pixel Precision in Liquid Argon Time Projection Chambers

    Dominé, Laura / de Soux, Pierre Côte / Drielsma, François / Koh, Dae Heun / Itay, Ran / Lin, Qing / Terao, Kazuhiro / Tsang, Ka Vang / Usher, Tracy L.

    2020  

    Abstract: Liquid Argon Time Projection Chambers (LArTPC) are particle imaging detectors recording 2D or 3D images of trajectories of charged particles. Identifying points of interest in these images, namely the initial and terminal points of track-like particle ... ...

    Abstract Liquid Argon Time Projection Chambers (LArTPC) are particle imaging detectors recording 2D or 3D images of trajectories of charged particles. Identifying points of interest in these images, namely the initial and terminal points of track-like particle trajectories such as muons and protons, and the initial points of electromagnetic shower-like particle trajectories such as electrons and gamma rays, is a crucial step of identifying and analyzing these particles and impacts the inference of physics signals such as neutrino interaction. The Point Proposal Network is designed to discover these specific points of interest. The algorithm predicts with a sub-voxel precision their spatial location, and also determines the category of the identified points of interest. Using as a benchmark the PILArNet public LArTPC data sample in which the voxel resolution is 3mm/voxel, our algorithm successfully predicted 96.8% and 97.8% of 3D points within a distance of 3 and 10~voxels from the provided true point locations respectively. For the predicted 3D points within 3 voxels of the closest true point locations, the median distance is found to be 0.25 voxels, achieving the sub-voxel level precision. In addition, we report our analysis of the mistakes where our algorithm prediction differs from the provided true point positions by more than 10~voxels. Among 50 mistakes visually scanned, 25 were due to the definition of true position location, 15 were legitimate mistakes where a physicist cannot visually disagree with the algorithm's prediction, and 10 were genuine mistakes that we wish to improve in the future. Further, using these predicted points, we demonstrate a simple algorithm to cluster 3D voxels into individual track-like particle trajectories with a clustering efficiency, purity, and Adjusted Rand Index of 96%, 93%, and 91% respectively.
    Keywords High Energy Physics - Experiment ; Computer Science - Computer Vision and Pattern Recognition ; Physics - Instrumentation and Detectors
    Subject code 006
    Publishing date 2020-06-25
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article: ICARUS at the Fermilab Short-Baseline Neutrino program: initial operation.

    Abratenko, P / Aduszkiewicz, A / Akbar, F / Pons, M Artero / Asaadi, J / Aslin, M / Babicz, M / Badgett, W F / Bagby, L F / Baibussinov, B / Behera, B / Bellini, V / Beltramello, O / Benocci, R / Berger, J / Berkman, S / Bertolucci, S / Bertoni, R / Betancourt, M /
    Bettini, M / Biagi, S / Biery, K / Bitter, O / Bonesini, M / Boone, T / Bottino, B / Braggiotti, A / Brailsford, D / Bremer, J / Brice, S J / Brio, V / Brizzolari, C / Brown, J / Budd, H S / Calaon, F / Campani, A / Carber, D / Carneiro, M / Terrazas, I Caro / Carranza, H / Casazza, D / Castellani, L / Castro, A / Centro, S / Cerati, G / Chalifour, M / Chambouvet, P / Chatterjee, A / Cherdack, D / Cherubini, S / Chithirasreemadam, N / Cicerchia, M / Cicero, V / Coan, T / Cocco, A G / Convery, M R / Copello, S / Cristaldo, E / Dange, A A / de Icaza Astiz, I / De Roeck, A / Di Domizio, S / Di Noto, L / Di Stefano, C / Di Ferdinando, D / Diwan, M / Dolan, S / Domine, L / Donati, S / Doubnik, R / Drielsma, F / Dyer, J / Dytman, S / Fabre, C / Fabris, F / Falcone, A / Farnese, C / Fava, A / Ferguson, H / Ferrari, A / Ferraro, F / Gallice, N / Garcia, F G / Geynisman, M / Giarin, M / Gibin, D / Gigli, S G / Gioiosa, A / Gu, W / Guerzoni, M / Guglielmi, A / Gurung, G / Hahn, S / Hardin, K / Hausner, H / Heggestuen, A / Hilgenberg, C / Hogan, M / Howard, B / Howell, R / Hrivnak, J / Iliescu, M / Ingratta, G / James, C / Jang, W / Jung, M / Jwa, Y-J / Kashur, L / Ketchum, W / Kim, J S / Koh, D-H / Kose, U / Larkin, J / Laurenti, G / Lukhanin, G / Marchini, S / Marshall, C M / Martynenko, S / Mauri, N / Mazzacane, A / McFarland, K S / Méndez, D P / Menegolli, A / Meng, G / Miranda, O G / Mladenov, D / Mogan, A / Moggi, N / Montagna, E / Montanari, C / Montanari, A / Mooney, M / Moreno-Granados, G / Mueller, J / Naples, D / Nebot-Guinot, M / Nessi, M / Nichols, T / Nicoletto, M / Norris, B / Palestini, S / Pallavicini, M / Paolone, V / Papaleo, R / Pasqualini, L / Patrizii, L / Peghin, R / Petrillo, G / Petta, C / Pia, V / Pietropaolo, F / Poirot, J / Poppi, F / Pozzato, M / Prata, M C / Prosser, A / Putnam, G / Qian, X / Rampazzo, G / Rappoldi, A / Raselli, G L / Rechenmacher, R / Resnati, F / Ricci, A M / Riccobene, G / Rice, L / Richards, E / Rigamonti, A / Rosenberg, M / Rossella, M / Rubbia, C / Sala, P / Sapienza, P / Savage, G / Scaramelli, A / Scarpelli, A / Schmitz, D / Schukraft, A / Sergiampietri, F / Sirri, G / Smedley, J S / Soha, A K / Spanu, M / Stanco, L / Stewart, J / Suarez, N B / Sutera, C / Tanaka, H A / Tenti, M / Terao, K / Terranova, F / Togo, V / Torretta, D / Torti, M / Tortorici, F / Tosi, N / Tsai, Y-T / Tufanli, S / Turcato, M / Usher, T / Varanini, F / Ventura, S / Vercellati, F / Vicenzi, M / Vignoli, C / Viren, B / Warner, D / Williams, Z / Wilson, R J / Wilson, P / Wolfs, J / Wongjirad, T / Wood, A / Worcester, E / Worcester, M / Wospakrik, M / Yu, H / Yu, J / Zani, A / Zatti, P G / Zennamo, J / Zettlemoyer, J C / Zhang, C / Zucchelli, S / Zuckerbrot, M

    The European physical journal. C, Particles and fields

    2023  Volume 83, Issue 6, Page(s) 467

    Abstract: The ICARUS collaboration employed the 760-ton T600 detector in a successful 3-year physics run at the underground LNGS laboratory, performing a sensitive search for LSND-like ... ...

    Abstract The ICARUS collaboration employed the 760-ton T600 detector in a successful 3-year physics run at the underground LNGS laboratory, performing a sensitive search for LSND-like anomalous
    Language English
    Publishing date 2023-06-04
    Publishing country France
    Document type Journal Article
    ZDB-ID 1459069-4
    ISSN 1434-6052 ; 1434-6044
    ISSN (online) 1434-6052
    ISSN 1434-6044
    DOI 10.1140/epjc/s10052-023-11610-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Survey of APNs employed by the Veterans Health Administration (VHA)

    Domine, L M / Siegal, M / Zicafoose, B / Antal-Otong, D / Stone, J T

    The Nurse practitioner

    1998  Volume 23, Issue 7, Page(s) 16, 19, 23

    MeSH term(s) Adult ; Age Distribution ; Female ; Humans ; Job Satisfaction ; Male ; Middle Aged ; Nurse Practitioners/organization & administration ; Surveys and Questionnaires ; United States ; United States Department of Veterans Affairs/organization & administration
    Language English
    Publishing date 1998-07
    Publishing country United States
    Document type Letter
    ZDB-ID 604085-8
    ISSN 1538-8662 ; 0361-1817
    ISSN (online) 1538-8662
    ISSN 0361-1817
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Conference proceedings ; Online: Trans-Tasman Trade in Manufactured Dairy Products

    Beare, Stephen / Domine, Lora / Lembit, Murray

    A Mathematical Programming Model of Imperfect Sectoral Competition

    1989  

    Keywords International Relations/Trade
    Language English
    Publishing country us
    Document type Conference proceedings ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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