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  1. Article ; Online: Towards a more general understanding of the algorithmic utility of recurrent connections.

    Larsen, Brett W / Druckmann, Shaul

    PLoS computational biology

    2022  Volume 18, Issue 6, Page(s) e1010227

    Abstract: Lateral and recurrent connections are ubiquitous in biological neural circuits. Yet while the strong computational abilities of feedforward networks have been extensively studied, our understanding of the role and advantages of recurrent computations ... ...

    Abstract Lateral and recurrent connections are ubiquitous in biological neural circuits. Yet while the strong computational abilities of feedforward networks have been extensively studied, our understanding of the role and advantages of recurrent computations that might explain their prevalence remains an important open challenge. Foundational studies by Minsky and Roelfsema argued that computations that require propagation of global information for local computation to take place would particularly benefit from the sequential, parallel nature of processing in recurrent networks. Such "tag propagation" algorithms perform repeated, local propagation of information and were originally introduced in the context of detecting connectedness, a task that is challenging for feedforward networks. Here, we advance the understanding of the utility of lateral and recurrent computation by first performing a large-scale empirical study of neural architectures for the computation of connectedness to explore feedforward solutions more fully and establish robustly the importance of recurrent architectures. In addition, we highlight a tradeoff between computation time and performance and construct hybrid feedforward/recurrent models that perform well even in the presence of varying computational time limitations. We then generalize tag propagation architectures to propagating multiple interacting tags and demonstrate that these are efficient computational substrates for more general computations of connectedness by introducing and solving an abstracted biologically inspired decision-making task. Our work thus clarifies and expands the set of computational tasks that can be solved efficiently by recurrent computation, yielding hypotheses for structure in population activity that may be present in such tasks.
    MeSH term(s) Models, Neurological
    Language English
    Publishing date 2022-06-21
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2193340-6
    ISSN 1553-7358 ; 1553-734X
    ISSN (online) 1553-7358
    ISSN 1553-734X
    DOI 10.1371/journal.pcbi.1010227
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Unraveling the Entangled Brain: How Do We Go About It?

    Druckmann, Shaul / Rust, Nicole C

    Journal of cognitive neuroscience

    2022  , Page(s) 1–4

    Abstract: An impactful understanding of the brain will require entirely new approaches and unprecedented collaborative efforts. The next steps will require brain researchers to develop theoretical frameworks that allow them to tease apart dependencies and ... ...

    Abstract An impactful understanding of the brain will require entirely new approaches and unprecedented collaborative efforts. The next steps will require brain researchers to develop theoretical frameworks that allow them to tease apart dependencies and causality in complex dynamical systems, as well as the ability to maintain awe while not getting lost in the effort. The outstanding question is: How do we go about it?
    Language English
    Publishing date 2022-11-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1007410-7
    ISSN 1530-8898 ; 0898-929X ; 1096-8857
    ISSN (online) 1530-8898
    ISSN 0898-929X ; 1096-8857
    DOI 10.1162/jocn_a_01950
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Temporal scaling of motor cortical dynamics reveals hierarchical control of vocal production.

    Banerjee, Arkarup / Chen, Feng / Druckmann, Shaul / Long, Michael A

    Nature neuroscience

    2024  Volume 27, Issue 3, Page(s) 527–535

    Abstract: Neocortical activity is thought to mediate voluntary control over vocal production, but the underlying neural mechanisms remain unclear. In a highly vocal rodent, the male Alston's singing mouse, we investigate neural dynamics in the orofacial motor ... ...

    Abstract Neocortical activity is thought to mediate voluntary control over vocal production, but the underlying neural mechanisms remain unclear. In a highly vocal rodent, the male Alston's singing mouse, we investigate neural dynamics in the orofacial motor cortex (OMC), a structure critical for vocal behavior. We first describe neural activity that is modulated by component notes (~100 ms), probably representing sensory feedback. At longer timescales, however, OMC neurons exhibit diverse and often persistent premotor firing patterns that stretch or compress with song duration (~10 s). Using computational modeling, we demonstrate that such temporal scaling, acting through downstream motor production circuits, can enable vocal flexibility. These results provide a framework for studying hierarchical control circuits, a common design principle across many natural and artificial systems.
    MeSH term(s) Male ; Animals ; Mice ; Motor Cortex/physiology ; Neurons/physiology ; Feedback, Sensory ; Vocalization, Animal/physiology
    Language English
    Publishing date 2024-01-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1420596-8
    ISSN 1546-1726 ; 1097-6256
    ISSN (online) 1546-1726
    ISSN 1097-6256
    DOI 10.1038/s41593-023-01556-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Feedforward amplification in recurrent networks underlies paradoxical neural coding.

    Daie, Kayvon / Fontolan, Lorenzo / Druckmann, Shaul / Svoboda, Karel

    bioRxiv : the preprint server for biology

    2023  

    Abstract: The activity of single neurons encodes behavioral variables, such as sensory stimuli (Hubel & Wiesel 1959) and behavioral choice (Britten et al. 1992; Guo et al. 2014), but their influence on behavior is often mysterious. We estimated the influence of a ... ...

    Abstract The activity of single neurons encodes behavioral variables, such as sensory stimuli (Hubel & Wiesel 1959) and behavioral choice (Britten et al. 1992; Guo et al. 2014), but their influence on behavior is often mysterious. We estimated the influence of a unit of neural activity on behavioral choice from recordings in anterior lateral motor cortex (ALM) in mice performing a memory-guided movement task (H. K. Inagaki et al. 2018). Choice selectivity grew as it flowed through a sequence of directions in activity space. Early directions carried little selectivity but were predicted to have a large behavioral influence, while late directions carried large selectivity and little behavioral influence. Consequently, estimated behavioral influence was only weakly correlated with choice selectivity; a large proportion of neurons selective for one choice were predicted to influence choice in the opposite direction. These results were consistent with models in which recurrent circuits produce feedforward amplification (Goldman 2009; Ganguli et al. 2008; Murphy & Miller 2009) so that small amplitude signals along early directions are amplified to produce low-dimensional choice selectivity along the late directions, and behavior. Targeted photostimulation experiments (Daie et al. 2021b) revealed that activity along the early directions triggered sequential activity along the later directions and caused predictable behavioral biases. These results demonstrate the existence of an amplifying feedforward dynamical motif in the motor cortex, explain paradoxical responses to perturbation experiments (Chettih & Harvey 2019; Daie et al. 2021b; Russell et al. 2019), and reveal behavioral relevance of small amplitude neural dynamics.
    Language English
    Publishing date 2023-08-07
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.08.04.552026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: A recurrent neural circuit in

    Pang, Michelle M / Chen, Feng / Xie, Marjorie / Druckmann, Shaul / Clandinin, Thomas R / Yang, Helen H

    bioRxiv : the preprint server for biology

    2024  

    Abstract: A critical goal of vision is to detect changes in light intensity, even when these changes are blurred by the spatial resolution of the eye and the motion of the animal. Here we describe a recurrent neural circuit ... ...

    Abstract A critical goal of vision is to detect changes in light intensity, even when these changes are blurred by the spatial resolution of the eye and the motion of the animal. Here we describe a recurrent neural circuit in
    Language English
    Publishing date 2024-04-24
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.04.19.590352
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Mapping the neural dynamics of locomotion across the Drosophila brain.

    Brezovec, Bella E / Berger, Andrew B / Hao, Yukun A / Chen, Feng / Druckmann, Shaul / Clandinin, Thomas R

    Current biology : CB

    2024  Volume 34, Issue 4, Page(s) 710–726.e4

    Abstract: Locomotion engages widely distributed networks of neurons. However, our understanding of the spatial architecture and temporal dynamics of the networks that underpin walking remains incomplete. We use volumetric two-photon imaging to map neural activity ... ...

    Abstract Locomotion engages widely distributed networks of neurons. However, our understanding of the spatial architecture and temporal dynamics of the networks that underpin walking remains incomplete. We use volumetric two-photon imaging to map neural activity associated with walking across the entire brain of Drosophila. We define spatially clustered neural signals selectively associated with changes in either forward or angular velocity, demonstrating that neurons with similar behavioral selectivity are clustered. These signals reveal distinct topographic maps in diverse brain regions involved in navigation, memory, sensory processing, and motor control, as well as regions not previously linked to locomotion. We identify temporal trajectories of neural activity that sweep across these maps, including signals that anticipate future movement, representing the sequential engagement of clusters with different behavioral specificities. Finally, we register these maps to a connectome and identify neural networks that we propose underlie the observed signals, setting a foundation for subsequent circuit dissection. Overall, our work suggests a spatiotemporal framework for the emergence and execution of complex walking maneuvers and links this brain-wide neural activity to single neurons and local circuits.
    MeSH term(s) Animals ; Drosophila/physiology ; Brain/physiology ; Locomotion/physiology ; Neurons/physiology ; Brain Mapping/methods ; Connectome
    Language English
    Publishing date 2024-01-18
    Publishing country England
    Document type Journal Article
    ZDB-ID 1071731-6
    ISSN 1879-0445 ; 0960-9822
    ISSN (online) 1879-0445
    ISSN 0960-9822
    DOI 10.1016/j.cub.2023.12.063
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  7. Article: Neural dynamics in the rodent motor cortex enables flexible control of vocal timing.

    Banerjee, Arkarup / Chen, Feng / Druckmann, Shaul / Long, Michael A

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Neocortical activity is thought to mediate voluntary control over vocal production, but the underlying neural mechanisms remain unclear. In a highly vocal rodent, the Alston's singing mouse, we investigate neural dynamics in the orofacial motor cortex ( ... ...

    Abstract Neocortical activity is thought to mediate voluntary control over vocal production, but the underlying neural mechanisms remain unclear. In a highly vocal rodent, the Alston's singing mouse, we investigate neural dynamics in the orofacial motor cortex (OMC), a structure critical for vocal behavior. We first describe neural activity that is modulated by component notes (approx. 100 ms), likely representing sensory feedback. At longer timescales, however, OMC neurons exhibit diverse and often persistent premotor firing patterns that stretch or compress with song duration (approx. 10 s). Using computational modeling, we demonstrate that such temporal scaling, acting via downstream motor production circuits, can enable vocal flexibility. These results provide a framework for studying hierarchical control circuits, a common design principle across many natural and artificial systems.
    Language English
    Publishing date 2023-01-23
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.01.23.525252
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Approaches to inferring multi-regional interactions from simultaneous population recordings: Inferring multi-regional interactions from simultaneous population recordings.

    Kang, Byungwoo / Druckmann, Shaul

    Current opinion in neurobiology

    2020  Volume 65, Page(s) 108–119

    Abstract: Most past studies of neural representations and dynamics have focused on recordings from single brain areas. However, growing evidence of brain-wide, parallel representations of cognitive variables suggests that analyzing neural representations and ... ...

    Abstract Most past studies of neural representations and dynamics have focused on recordings from single brain areas. However, growing evidence of brain-wide, parallel representations of cognitive variables suggests that analyzing neural representations and dynamics in individual brain areas can benefit from understanding the context of multi-regional interactions that support them. Moreover, perturbation experiments revealed that the manner in which these parallel representations interact with each other can differ dramatically across different pairs of brain areas. Recent advances in recording technology offer a potentially powerful substrate to study how multi-regional interactions coordinate neural representations in individual brain areas and dictate behavior on a single-trial basis through simultaneous recordings of multiple brain areas. We review pragmatic approaches to studying multi-regional interactions and illustrate them in the concrete context of a rodent delayed response task paradigm.
    MeSH term(s) Brain ; Brain Mapping
    Language English
    Publishing date 2020-11-20
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1078046-4
    ISSN 1873-6882 ; 0959-4388
    ISSN (online) 1873-6882
    ISSN 0959-4388
    DOI 10.1016/j.conb.2020.10.004
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  9. Article ; Online: Targeted photostimulation uncovers circuit motifs supporting short-term memory.

    Daie, Kayvon / Svoboda, Karel / Druckmann, Shaul

    Nature neuroscience

    2021  Volume 24, Issue 2, Page(s) 259–265

    Abstract: Short-term memory is associated with persistent neural activity that is maintained by positive feedback between neurons. To explore the neural circuit motifs that produce memory-related persistent activity, we measured coupling between functionally ... ...

    Abstract Short-term memory is associated with persistent neural activity that is maintained by positive feedback between neurons. To explore the neural circuit motifs that produce memory-related persistent activity, we measured coupling between functionally characterized motor cortex neurons in mice performing a memory-guided response task. Targeted two-photon photostimulation of small (<10) groups of neurons produced sparse calcium responses in coupled neurons over approximately 100 μm. Neurons with similar task-related selectivity were preferentially coupled. Photostimulation of different groups of neurons modulated activity in different subpopulations of coupled neurons. Responses of stimulated and coupled neurons persisted for seconds, far outlasting the duration of the photostimuli. Photostimuli produced behavioral biases that were predictable based on the selectivity of the perturbed neuronal population, even though photostimulation preceded the behavioral response by seconds. Our results suggest that memory-related neural circuits contain intercalated, recurrently connected modules, which can independently maintain selective persistent activity.
    MeSH term(s) Animals ; Behavior, Animal/physiology ; Calcium/metabolism ; Discrimination Learning/physiology ; Memory, Short-Term/physiology ; Mice ; Models, Neurological ; Motor Activity/physiology ; Neural Pathways/physiology ; Neurons/physiology ; Prefrontal Cortex/physiology
    Chemical Substances Calcium (SY7Q814VUP)
    Language English
    Publishing date 2021-01-25
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1420596-8
    ISSN 1546-1726 ; 1097-6256
    ISSN (online) 1546-1726
    ISSN 1097-6256
    DOI 10.1038/s41593-020-00776-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Transforming a head direction signal into a goal-oriented steering command.

    Westeinde, Elena A / Kellogg, Emily / Dawson, Paul M / Lu, Jenny / Hamburg, Lydia / Midler, Benjamin / Druckmann, Shaul / Wilson, Rachel I

    Nature

    2024  Volume 626, Issue 8000, Page(s) 819–826

    Abstract: To navigate, we must continuously estimate the direction we are headed in, and we must correct deviations from our ... ...

    Abstract To navigate, we must continuously estimate the direction we are headed in, and we must correct deviations from our goal
    MeSH term(s) Animals ; Brain/cytology ; Brain/physiology ; Connectome ; Drosophila melanogaster/cytology ; Drosophila melanogaster/physiology ; Goals ; Head/physiology ; Locomotion/physiology ; Neurons/classification ; Neurons/physiology ; Orientation, Spatial/physiology ; Spatial Navigation/physiology ; Time Factors
    Language English
    Publishing date 2024-02-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-024-07039-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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