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  1. Article ; Online: Precision phenotyping of contrasting potato (Solanum tuberosum L.) varieties in a novel aeroponics system for improving nitrogen use efficiency: In search of key traits and genes

    TIWARI, Jagesh K. / DEVI, Sapna / BUCKSETH, Tanuja / ALI, Nilofer / SINGH, Rajesh K. / ZINTA, Rasna / DUA, Vijay K. / Chakrabarti, Swarup K.

    CAAS. Publishing services by Elsevier B.V Journal of integrative agriculture. 2020 Jan., v. 19, no. 1 p.51-61

    2020  

    Abstract: With increasing population, degrading soil health, limited arable land area, and high cost of nitrogen (N) fertilizers, improving nitrogen use efficiency (NUE) of potato is an inevitable approach to save the environment and achieve sufficient tuber ... ...

    Abstract With increasing population, degrading soil health, limited arable land area, and high cost of nitrogen (N) fertilizers, improving nitrogen use efficiency (NUE) of potato is an inevitable approach to save the environment and achieve sufficient tuber yields with less N fertilizer supply. Recently, we have developed an aeroponics system to study NUE in potato using genomics, physiology, and breeding approaches. This study aims on precision phenotyping of plants of two distinct potato varieties (Kufri Gaurav, N efficient; Kufri Jyoti, N inefficient) in the novel aeroponics system. Plants were grown in aeroponics under controlled conditions with low N (0.75 mmol L⁻¹ NO₃⁻) and high N (7.5 mmol L⁻¹ NO₃⁻) levels. Plant biomass, root traits, total chlorophyll content, and plant N were increased with increasing N supply, whereas higher NUE parameters namely NUE, agronomic NUE (AgNUE), N uptake efficiency (NUpE), harvest index (HI), and N harvest index (NHI) were observed at low N. An NUE efficient cv. Kufri Gaurav showed higher tuber dry weight, fresh tuber yield, tuber number per plant, early start of tuber harvesting, root traits, stolon traits, NUE parameters, and higher amino acid (aspartic acid and asparagine) content at low N supply. Higher expression of nitrate reductase (NR), nitrite reductase (NIR), and asparagine synthetase (AS) genes was observed in the leaf tissues of Kufri Gaurav at high N. Thus, aeroponics-based precision phenotyping enables identification of NUE efficient genotypes based on key traits and genes involved in improving NUE in potato. Further, this study suggests that the potential of aeroponics can be utilized to investigate N biology in potato under different N regimes.
    Keywords Solanum tuberosum ; aeroponics ; agriculture ; arable soils ; asparagine ; aspartate-ammonia ligase ; aspartic acid ; chlorophyll ; genomics ; harvest index ; leaves ; nitrate reductase ; nitrite reductase ; nitrogen ; nitrogen fertilizers ; nutrient use efficiency ; phenotype ; phytomass ; potatoes ; soil quality ; precision phenotyping ; potato ; nitrogen use efficiency
    Language English
    Dates of publication 2020-01
    Size p. 51-61.
    Publishing place Elsevier B.V.
    Document type Article ; Online
    Note NAL-AP-2-clean
    ZDB-ID 2660426-7
    ISSN 2095-3119
    ISSN 2095-3119
    DOI 10.1016/S2095-3119(19)62625-0
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav.

    Tiwari, Jagesh Kumar / Buckseth, Tanuja / Devi, Sapna / Varshney, Shivangi / Sahu, Sarika / Patil, Virupaksh U / Zinta, Rasna / Ali, Nilofer / Moudgil, Vaishali / Singh, Rajesh K / Rawat, Shashi / Dua, Vijay K / Kumar, Devendra / Kumar, Manoj / Chakrabarti, Swarup K / Rao, Atmakuri R / Rai, Anil

    Plant physiology and biochemistry : PPB

    2020  Volume 154, Page(s) 171–183

    Abstract: Nitrogen (N) is an important nutrient for plant growth. However, its excess application leads to environmental damage. Hence, improving nitrogen use efficiency (NUE) of plant is one of the plausible options to solve the problems. Aim of this study was to ...

    Abstract Nitrogen (N) is an important nutrient for plant growth. However, its excess application leads to environmental damage. Hence, improving nitrogen use efficiency (NUE) of plant is one of the plausible options to solve the problems. Aim of this study was to identify candidate genes involved in enhancing NUE in potato cv. Kufri Gaurav (N efficient). Plants were grown in aeroponic with two contrasting N regimes (low N: 0.75 mM, and high N: 7.5 mM). Higher NUE in Kufri Gaurav was observed in low N based on the parameters like NUE, NUpE (N uptake efficiency), NUtE (N utilization efficiency) and AgNUE (agronomic NUE). Further, global gene expression profiles in root, leaf and stolon tissues were analyzed by RNA-sequencing using Ion Proton™ System. Quality data (≥Q20) of 2.04-2.73 Gb per sample were mapped with the potato genome. Statistically significant (P ≤ 0.05) differentially expressed genes (DEGs) were identified such as 176 (up-regulated) and 30 (down-regulated) in leaves, 39 (up-regulated) and 105 (down-regulated) in roots, and 81 (up-regulated) and 694 (down-regulated) in stolons. The gene ontology (GO) terms like metabolic process, cellular process and catalytic activity were predominant. Our RT-qPCR analysis confirmed the gene expression profiles of RNA-seq. Overall, we identified candidate genes associated with improving NUE such as superoxide dismutase, GDSL esterase lipase, probable phosphatase 2C, high affinity nitrate transporters, sugar transporter, proline rich proteins, transcription factors (VQ motif, SPX domain, bHLH) etc. Our findings suggest that these candidate genes probably play crucial roles in enhancing NUE in potato.
    MeSH term(s) Genome, Plant ; Nitrogen/metabolism ; RNA, Plant ; Sequence Analysis, RNA ; Solanum tuberosum/genetics ; Transcriptome
    Chemical Substances RNA, Plant ; Nitrogen (N762921K75)
    Language English
    Publishing date 2020-06-09
    Publishing country France
    Document type Journal Article
    ZDB-ID 742978-2
    ISSN 1873-2690 ; 0981-9428
    ISSN (online) 1873-2690
    ISSN 0981-9428
    DOI 10.1016/j.plaphy.2020.05.041
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav

    Tiwari, Jagesh Kumar / Buckseth, Tanuja / Devi, Sapna / Varshney, Shivangi / Sahu, Sarika / Patil, Virupaksh U / Zinta, Rasna / Ali, Nilofer / Moudgil, Vaishali / Singh, Rajesh K / Rawat, Shashi / Dua, Vijay K / Kumar, Devendra / Kumar, Manoj / Chakrabarti, Swarup K / Rao, Atmakuri R / Rai, Anil

    Plant physiology and biochemistry. 2020 Sept., v. 154

    2020  

    Abstract: Nitrogen (N) is an important nutrient for plant growth. However, its excess application leads to environmental damage. Hence, improving nitrogen use efficiency (NUE) of plant is one of the plausible options to solve the problems. Aim of this study was to ...

    Abstract Nitrogen (N) is an important nutrient for plant growth. However, its excess application leads to environmental damage. Hence, improving nitrogen use efficiency (NUE) of plant is one of the plausible options to solve the problems. Aim of this study was to identify candidate genes involved in enhancing NUE in potato cv. Kufri Gaurav (N efficient). Plants were grown in aeroponic with two contrasting N regimes (low N: 0.75 mM, and high N: 7.5 mM). Higher NUE in Kufri Gaurav was observed in low N based on the parameters like NUE, NUpE (N uptake efficiency), NUtE (N utilization efficiency) and AgNUE (agronomic NUE). Further, global gene expression profiles in root, leaf and stolon tissues were analyzed by RNA-sequencing using Ion Proton™ System. Quality data (≥Q20) of 2.04–2.73 Gb per sample were mapped with the potato genome. Statistically significant (P ≤ 0.05) differentially expressed genes (DEGs) were identified such as 176 (up-regulated) and 30 (down-regulated) in leaves, 39 (up-regulated) and 105 (down-regulated) in roots, and 81 (up-regulated) and 694 (down-regulated) in stolons. The gene ontology (GO) terms like metabolic process, cellular process and catalytic activity were predominant. Our RT-qPCR analysis confirmed the gene expression profiles of RNA-seq. Overall, we identified candidate genes associated with improving NUE such as superoxide dismutase, GDSL esterase lipase, probable phosphatase 2C, high affinity nitrate transporters, sugar transporter, proline rich proteins, transcription factors (VQ motif, SPX domain, bHLH) etc. Our findings suggest that these candidate genes probably play crucial roles in enhancing NUE in potato.
    Keywords aeroponics ; carboxylic ester hydrolases ; catalytic activity ; gene expression ; gene expression regulation ; gene ontology ; leaves ; nitrates ; nitrogen ; nutrient use efficiency ; plant growth ; potatoes ; proline ; sequence analysis ; stolons ; sugars ; superoxide dismutase
    Language English
    Dates of publication 2020-09
    Size p. 171-183.
    Publishing place Elsevier Masson SAS
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 742978-2
    ISSN 1873-2690 ; 0981-9428
    ISSN (online) 1873-2690
    ISSN 0981-9428
    DOI 10.1016/j.plaphy.2020.05.041
    Database NAL-Catalogue (AGRICOLA)

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