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  1. Article ; Online: Specific Residues in the C-Terminal Domain of the Human Metapneumovirus Phosphoprotein Are Indispensable for Formation of Viral Replication Centers and Regulation of the Function of the Viral Polymerase Complex.

    Thompson, Rachel Erin / Edmonds, Kearstin / Dutch, Rebecca Ellis

    Journal of virology

    2023  Volume 97, Issue 5, Page(s) e0003023

    Abstract: Human metapneumovirus (HMPV) is a negative-strand RNA virus that frequently causes respiratory tract infections in infants, the elderly, and the immunocompromised. A hallmark of HMPV infection is the formation of membraneless, liquid-like replication and ...

    Abstract Human metapneumovirus (HMPV) is a negative-strand RNA virus that frequently causes respiratory tract infections in infants, the elderly, and the immunocompromised. A hallmark of HMPV infection is the formation of membraneless, liquid-like replication and transcription centers in the cytosol termed inclusion bodies (IBs). The HMPV phosphoprotein (P) and nucleoprotein (N) are the minimal viral proteins necessary to form IB-like structures, and both proteins are required for the viral polymerase to synthesize RNA during infection. HMPV P is a homotetramer with regions of intrinsic disorder and has several known and predicted phosphorylation sites of unknown function. In this study, we found that the P C-terminal intrinsically disordered domain (CTD) must be present to facilitate IB formation with HMPV N, while either the N-terminal intrinsically disordered domain or the central oligomerization domain was dispensable. Alanine substitution at a single tyrosine residue within the CTD abrogated IB formation and reduced coimmunoprecipitation with HMPV N. Mutations to C-terminal phosphorylation sites revealed a potential role for phosphorylation in regulating RNA synthesis and P binding partners within IBs. Phosphorylation mutations which reduced RNA synthesis in a reporter assay produced comparable results in a recombinant viral rescue system, measured as an inability to produce infectious viral particles with genomes containing these single P mutations. This work highlights the critical role HMPV P plays in facilitating a key step of the viral life cycle and reveals the potential role for phosphorylation in regulating the function of this significant viral protein.
    MeSH term(s) Aged ; Humans ; Cell Line ; Metapneumovirus/physiology ; Nucleotidyltransferases ; Paramyxoviridae Infections/virology ; Phosphoproteins/genetics ; Phosphoproteins/metabolism ; Respiratory Tract Infections ; RNA ; Viral Proteins/genetics ; Viral Proteins/metabolism ; Viral Replication Compartments/metabolism ; Virus Replication ; Inclusion Bodies, Viral/metabolism
    Chemical Substances Nucleotidyltransferases (EC 2.7.7.-) ; Phosphoproteins ; RNA (63231-63-0) ; Viral Proteins
    Language English
    Publishing date 2023-04-24
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/jvi.00030-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Demonstration of Hollow Fiber Membrane-Based Enclosed Space Air Remediation for Capture of an Aerosolized Synthetic SARS-CoV-2 Mimic and Pseudovirus Particles.

    Baldridge, Kevin C / Edmonds, Kearstin / Dziubla, Thomas / Hilt, J Zach / Dutch, Rebecca E / Bhattacharyya, Dibakar

    ACS ES&T engineering

    2022  Volume 2, Issue 2, Page(s) 251–262

    Abstract: Reduction of airborne viral particles in enclosed spaces is critical in controlling pandemics. Three different hollow fiber membrane (HFM) modules were investigated for viral aerosol separation in enclosed spaces. Pore structures were characterized by ... ...

    Abstract Reduction of airborne viral particles in enclosed spaces is critical in controlling pandemics. Three different hollow fiber membrane (HFM) modules were investigated for viral aerosol separation in enclosed spaces. Pore structures were characterized by scanning electron microscopy, and air transport properties were measured. Particle removal efficiency was characterized using aerosols generated by a collision atomizer from a defined mixture of synthetic nanoparticles including SARS-CoV-2 mimics (protein-coated 100 nm polystyrene). HFM1 (polyvinylidene fluoride, ~50-1300 nm pores) demonstrated 96.5-100% efficiency for aerosols in the size range of 0.3-3
    Language English
    Publishing date 2022-01-11
    Publishing country United States
    Document type Journal Article
    ISSN 2690-0645
    ISSN (online) 2690-0645
    DOI 10.1021/acsestengg.1c00369
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Enhanced Inactivation of Pseudoparticles Containing SARS-CoV-2 S Protein Using Magnetic Nanoparticles and an Alternating Magnetic Field.

    Paul, Pranto / Edmonds, Kearstin L / Baldridge, Kevin C / Bhattacharyya, Dibakar / Dziubla, Thomas / Dutch, Rebecca Ellis / Hilt, J Zach

    ACS applied bio materials

    2022  Volume 5, Issue 11, Page(s) 5140–5147

    Abstract: Severe acute respiratory syndrome coronavirus 2's (SARS-CoV-2) rapid global spread has posed a significant threat to human health, and similar outbreaks could occur in the future. Developing effective virus inactivation technologies is critical to ... ...

    Abstract Severe acute respiratory syndrome coronavirus 2's (SARS-CoV-2) rapid global spread has posed a significant threat to human health, and similar outbreaks could occur in the future. Developing effective virus inactivation technologies is critical to preventing and overcoming pandemics. The infection of SARS-CoV-2 depends on the binding of the spike glycoprotein (S) receptor binding domain (RBD) to the host cellular surface receptor angiotensin-converting enzyme 2 (ACE2). If this interaction is disrupted, SARS-CoV-2 infection could be inhibited. Magnetic nanoparticle (MNP) dispersions exposed to an alternating magnetic field (AMF) possess the unique ability for magnetically mediated energy delivery (MagMED); this localized energy delivery and associated mechanical, chemical, and thermal effects are a possible technique for inactivating viruses. This study investigates the MNPs' effect on vesicular stomatitis virus pseudoparticles containing the SARS-CoV-2 S protein when exposed to AMF or a water bath (WB) with varying target steady-state temperatures (45, 50, and 55 °C) for different exposure times (5, 15, and 30 min). In comparison to WB exposures at the same temperatures, AMF exposures resulted in significantly greater inactivation in multiple cases. This is likely due to AMF-induced localized heating and rotation of MNPs. In brief, our findings demonstrate a potential strategy for combating the SARS-CoV-2 pandemic or future ones.
    MeSH term(s) Humans ; SARS-CoV-2 ; COVID-19 ; Magnetite Nanoparticles/therapeutic use ; Peptidyl-Dipeptidase A/chemistry ; Magnetic Fields
    Chemical Substances spike protein, SARS-CoV-2 ; Magnetite Nanoparticles ; Peptidyl-Dipeptidase A (EC 3.4.15.1)
    Language English
    Publishing date 2022-10-31
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ISSN 2576-6422
    ISSN (online) 2576-6422
    DOI 10.1021/acsabm.2c00522
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Analysis of Hendra Virus Fusion Protein N-Terminal Transmembrane Residues

    Barrett, Chelsea T. / Neal, Hadley E. / Edmonds, Kearstin / Zamora, J. Lizbeth Reyes / Moncman, Carole L. / Popa, Andreea / Smith, Everett Clinton / Webb, Stacy R. / Dutch, Rebecca Ellis

    Viruses. 2021 Nov. 24, v. 13, no. 12

    2021  

    Abstract: Hendra virus (HeV) is a zoonotic enveloped member of the family Paramyoxviridae. To successfully infect a host cell, HeV utilizes two surface glycoproteins: the attachment (G) protein to bind, and the trimeric fusion (F) protein to merge the viral ... ...

    Abstract Hendra virus (HeV) is a zoonotic enveloped member of the family Paramyoxviridae. To successfully infect a host cell, HeV utilizes two surface glycoproteins: the attachment (G) protein to bind, and the trimeric fusion (F) protein to merge the viral envelope with the membrane of the host cell. The transmembrane (TM) region of HeV F has been shown to have roles in F protein stability and the overall trimeric association of F. Previously, alanine scanning mutagenesis has been performed on the C-terminal end of the protein, revealing the importance of β-branched residues in this region. Additionally, residues S490 and Y498 have been demonstrated to be important for F protein endocytosis, needed for the proteolytic processing of F required for fusion. To complete the analysis of the HeV F TM, we performed alanine scanning mutagenesis to explore the residues in the N-terminus of this region (residues 487–506). In addition to confirming the critical roles for S490 and Y498, we demonstrate that mutations at residues M491 and L492 alter F protein function, suggesting a role for these residues in the fusion process.
    Keywords Hendra henipavirus ; alanine ; endocytosis ; glycoproteins ; mutagenesis ; proteolysis ; viral fusion proteins
    Language English
    Dates of publication 2021-1124
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v13122353
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Human Metapneumovirus Phosphoprotein Independently Drives Phase Separation and Recruits Nucleoprotein to Liquid-Like Bodies.

    Boggs, Kerri Beth / Edmonds, Kearstin / Cifuentes-Munoz, Nicolas / El Najjar, Farah / Ossandón, Conny / Roe, McKenna / Wu, Chao / Moncman, Carole L / Creamer, Trevor P / Amarasinghe, Gaya K / Leung, Daisy W / Dutch, Rebecca Ellis

    mBio

    2022  Volume 13, Issue 3, Page(s) e0109922

    Abstract: Human metapneumovirus (HMPV) inclusion bodies (IBs) are dynamic structures required for efficient viral replication and transcription. The minimum components needed to form IB-like structures in cells are the nucleoprotein (N) and the tetrameric ... ...

    Abstract Human metapneumovirus (HMPV) inclusion bodies (IBs) are dynamic structures required for efficient viral replication and transcription. The minimum components needed to form IB-like structures in cells are the nucleoprotein (N) and the tetrameric phosphoprotein (P). HMPV P binds to the following two versions of the N protein in infected cells: N-terminal P residues interact with monomeric N (N
    MeSH term(s) Humans ; Antiviral Agents ; Metapneumovirus/genetics ; Nucleic Acids ; Nucleoproteins/genetics ; Nucleoproteins/metabolism ; Phosphoproteins/genetics ; Phosphoproteins/metabolism ; RNA ; Virus Replication ; Inclusion Bodies, Viral
    Chemical Substances Antiviral Agents ; Nucleic Acids ; Nucleoproteins ; Phosphoproteins ; RNA (63231-63-0)
    Language English
    Publishing date 2022-05-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mbio.01099-22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Analysis of Hendra Virus Fusion Protein N-Terminal Transmembrane Residues.

    Barrett, Chelsea T / Neal, Hadley E / Edmonds, Kearstin / Zamora, J Lizbeth Reyes / Moncman, Carole L / Popa, Andreea / Smith, Everett Clinton / Webb, Stacy R / Dutch, Rebecca Ellis

    Viruses

    2021  Volume 13, Issue 12

    Abstract: Hendra virus (HeV) is a zoonotic enveloped member of the family Paramyoxviridae. To successfully infect a host cell, HeV utilizes two surface glycoproteins: the attachment (G) protein to bind, and the trimeric fusion (F) protein to merge the viral ... ...

    Abstract Hendra virus (HeV) is a zoonotic enveloped member of the family Paramyoxviridae. To successfully infect a host cell, HeV utilizes two surface glycoproteins: the attachment (G) protein to bind, and the trimeric fusion (F) protein to merge the viral envelope with the membrane of the host cell. The transmembrane (TM) region of HeV F has been shown to have roles in F protein stability and the overall trimeric association of F. Previously, alanine scanning mutagenesis has been performed on the C-terminal end of the protein, revealing the importance of β-branched residues in this region. Additionally, residues S490 and Y498 have been demonstrated to be important for F protein endocytosis, needed for the proteolytic processing of F required for fusion. To complete the analysis of the HeV F TM, we performed alanine scanning mutagenesis to explore the residues in the N-terminus of this region (residues 487-506). In addition to confirming the critical roles for S490 and Y498, we demonstrate that mutations at residues M491 and L492 alter F protein function, suggesting a role for these residues in the fusion process.
    MeSH term(s) Alanine/genetics ; Amino Acid Sequence ; Amino Acid Substitution ; Animals ; Cell Membrane/metabolism ; Chlorocebus aethiops ; Endocytosis ; Endosomes/metabolism ; Genes, Reporter ; Hendra Virus/genetics ; Hendra Virus/physiology ; Henipavirus Infections/virology ; Humans ; Membrane Fusion ; Mutagenesis, Site-Directed ; Protein Domains ; Protein Stability ; Vero Cells ; Viral Fusion Proteins/genetics ; Viral Fusion Proteins/metabolism
    Chemical Substances Viral Fusion Proteins ; Alanine (OF5P57N2ZX)
    Language English
    Publishing date 2021-11-24
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v13122353
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Effect of clinical isolate or cleavage site mutations in the SARS-CoV-2 spike protein on protein stability, cleavage, and cell-cell fusion.

    Barrett, Chelsea T / Neal, Hadley E / Edmonds, Kearstin / Moncman, Carole L / Thompson, Rachel / Branttie, Jean M / Boggs, Kerri Beth / Wu, Cheng-Yu / Leung, Daisy W / Dutch, Rebecca E

    The Journal of biological chemistry

    2021  Volume 297, Issue 1, Page(s) 100902

    Abstract: The trimeric severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating ... ...

    Abstract The trimeric severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating fusion needed for viral entry, S can also drive cell-cell fusion, a pathogenic effect observed in the lungs of SARS-CoV-2-infected patients. While several studies have investigated S requirements involved in viral particle entry, examination of S stability and factors involved in S cell-cell fusion remain limited. A furin cleavage site at the border between the S1 and S2 subunits (S1/S2) has been identified, along with putative cathepsin L and transmembrane serine protease 2 cleavage sites within S2. We demonstrate that S must be processed at the S1/S2 border in order to mediate cell-cell fusion and that mutations at potential cleavage sites within the S2 subunit alter S processing at the S1/S2 border, thus preventing cell-cell fusion. We also identify residues within the internal fusion peptide and the cytoplasmic tail that modulate S-mediated cell-cell fusion. In addition, we examined S stability and protein cleavage kinetics in a variety of mammalian cell lines, including a bat cell line related to the likely reservoir species for SARS-CoV-2, and provide evidence that proteolytic processing alters the stability of the S trimer. This work therefore offers insight into S stability, proteolytic processing, and factors that mediate S cell-cell fusion, all of which help give a more comprehensive understanding of this high-profile therapeutic target.
    MeSH term(s) Animals ; COVID-19/virology ; Cell Fusion ; Cell Line ; Chlorocebus aethiops ; Humans ; Protein Processing, Post-Translational ; Protein Stability ; SARS-CoV-2/chemistry ; SARS-CoV-2/genetics ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism ; Virus Attachment ; Virus Internalization
    Chemical Substances Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Language English
    Publishing date 2021-06-20
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1016/j.jbc.2021.100902
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Effect of mutations in the SARS-CoV-2 spike protein on protein stability, cleavage, and cell-cell fusion function.

    Barrett, Chelsea T / Neal, Hadley E / Edmonds, Kearstin / Moncman, Carole L / Thompson, Rachel / Branttie, Jean M / Boggs, Kerri Beth / Wu, Cheng-Yu / Leung, Daisy W / Dutch, Rebecca E

    bioRxiv : the preprint server for biology

    2021  

    Abstract: The SARS-CoV-2 spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating fusion needed for viral entry, S can also drive cell-cell fusion, ...

    Abstract The SARS-CoV-2 spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating fusion needed for viral entry, S can also drive cell-cell fusion, a pathogenic effect observed in the lungs of SARS-CoV-2 infected patients. While several studies have investigated S requirements involved in viral particle entry, examination of S stability and factors involved in S cell-cell fusion remain limited. We demonstrate that S must be processed at the S1/S2 border in order to mediate cell-cell fusion, and that mutations at potential cleavage sites within the S2 subunit alter S processing at the S1/S2 border, thus preventing cell-cell fusion. We also identify residues within the internal fusion peptide and the cytoplasmic tail that modulate S cell-cell fusion. Additionally, we examine S stability and protein cleavage kinetics in a variety of mammalian cell lines, including a bat cell line related to the likely reservoir species for SARS-CoV-2, and provide evidence that proteolytic processing alters the stability of the S trimer. This work therefore offers insight into S stability, proteolytic processing, and factors that mediate S cell-cell fusion, all of which help give a more comprehensive understanding of this highly sought-after therapeutic target.
    Language English
    Publishing date 2021-01-25
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2021.01.24.428007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Effect of mutations in the SARS-CoV-2 spike protein on protein stability, cleavage, and cell-cell fusion function

    Barrett, Chelsea T. / Neal, Hadley E. / Edmonds, Kearstin / Moncman, Carole L. / Thompson, Rachel / Branttie, Jean M. / Boggs, Kerri Beth / Wu, Cheng-Yu / Leung, Daisy W. / Dutch, Rebecca Ellis

    bioRxiv

    Abstract: The SARS-CoV-2 spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating fusion needed for viral entry, S can also drive cell-cell fusion, ...

    Abstract The SARS-CoV-2 spike protein (S) is the sole viral protein responsible for both viral binding to a host cell and the membrane fusion event needed for cell entry. In addition to facilitating fusion needed for viral entry, S can also drive cell-cell fusion, a pathogenic effect observed in the lungs of SARS-CoV-2 infected patients. While several studies have investigated S requirements involved in viral particle entry, examination of S stability and factors involved in S cell-cell fusion remain limited. We demonstrate that S must be processed at the S1/S2 border in order to mediate cell-cell fusion, and that mutations at potential cleavage sites within the S2 subunit alter S processing at the S1/S2 border, thus preventing cell-cell fusion. We also identify residues within the internal fusion peptide and the cytoplasmic tail that modulate S cell-cell fusion. Additionally, we examine S stability and protein cleavage kinetics in a variety of mammalian cell lines, including a bat cell line related to the likely reservoir species for SARS-CoV-2, and provide evidence that proteolytic processing alters the stability of the S trimer. This work therefore offers insight into S stability, proteolytic processing, and factors that mediate S cell-cell fusion, all of which help give a more comprehensive understanding of this highly sought-after therapeutic target.
    Keywords covid19
    Language English
    Publishing date 2021-01-25
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2021.01.24.428007
    Database COVID19

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