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  1. Article ; Online: Synthesis, X-ray Crystal Structure, Anticancer, Hirshfeld Surface Analysis, DFT, TD-DFT, ADMET, and Molecular Docking of 3-Phenyl-1,2,4-triazolo[3,4-h]-13,4-thiaza-11-crown-4

    Fatima Lazrak / Sanae Lahmidi / El Hassane Anouar / Mohammed M. Alanazi / Ashwag S. Alanazi / El Mokhtar Essassi / Joel T. Mague

    Molecules, Vol 28, Iss 3166, p

    2023  Volume 3166

    Abstract: In this work, we describe the synthesis of new macrocycles derived from 3-phenyl-1,2,4-triazole-5-thione 1 in a heterogeneous medium using liquid–solid phase transfer catalysis (PTC) conditions. The structures of the two compounds ( 3 and 4 ) isolated ... ...

    Abstract In this work, we describe the synthesis of new macrocycles derived from 3-phenyl-1,2,4-triazole-5-thione 1 in a heterogeneous medium using liquid–solid phase transfer catalysis (PTC) conditions. The structures of the two compounds ( 3 and 4 ) isolated were elucidated based on spectral data ( 1 H-NMR, 13 C-NMR) and confirmed in the case of 3-phenyl-1,2,4-triazolo [3,4-h]-13,4--thiaza-11-crown-4 ( 3 ) by a single-crystal X-ray diffraction analysis. Furthermore, the experimental spectral and the X-ray geometrical parameters were compared with their corresponding predicted ones obtained at the B3LYP/6-311++G(d,p) level of theory. The intercontacts between crystal units were investigated through Hirshfeld surface analysis. The drug-like macrocycles were predicted using ADMET and drug-likeness properties, which showed that 3 may act as an inhibitor of DNA-dependent protein kinase (DNA-PK). This assumption was confirmed by the well-binding fitting of 3 into the binding site of DNA-PK and the formation of a stable 3 -DNA-PK complex with a binding energy of −7 kcal-mol −1 . Finally, the anticancer activity of 3 was assessed by an MTT assay against A549 cells, which showed that 3 has moderate anticancer activity compared to that of the doxorubicin reference drug.
    Keywords triazole ; dihalogeno triethylene glycol ; phase transfer catalysis ; crown ether ; X-ray ; DFT ; Organic chemistry ; QD241-441
    Subject code 540
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methylisoxazol-3-yl)methyl]-1H-benzimidazole

    Ahlam Idrissi / Karim Chkirate / Nadeem Abad / Bahia Djerrari / Redouane Achour / El Mokhtar Essassi / Luc Van Meervelt

    Acta Crystallographica Section E: Crystallographic Communications, Vol 77, Iss 4, Pp 396-

    2021  Volume 401

    Abstract: In the title molecule, C13H13N3O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N—H.N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld ... ...

    Abstract In the title molecule, C13H13N3O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N—H.N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H.H (48.8%), H.C/C.H (20.9%) and H.N/N.H (19.3%) interactions. The optimized structure calculated using density functional theory at the B3LYP/6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energy gap is 4.9266 eV.
    Keywords crystal structure ; density functional theory ; benzimidazole ; hydrogen bond ; hirshfeld surface analysis ; Chemistry ; QD1-999
    Language English
    Publishing date 2021-04-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Crystal structure, Hirshfeld surface analysis and DFT study of N-(2-amino-5-methylphenyl)-2-(5-methyl-1H-pyrazol-3-yl)acetamide

    Gamal Al Ati / Karim Chkirate / Joel T. Mague / Nadeem Abad / Redouane Achour / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 77, Iss 6, Pp 638-

    2021  Volume 642

    Abstract: The title molecule, C13H16N4O, adopts an angular conformation. In the crystal a layer structure is generated by N—H.O and N—H.N hydrogen bonds together with C—H.π(ring) interactions. Hirshfeld surface analysis indicates that the most important ... ...

    Abstract The title molecule, C13H16N4O, adopts an angular conformation. In the crystal a layer structure is generated by N—H.O and N—H.N hydrogen bonds together with C—H.π(ring) interactions. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H.H (53.8%), H.C/C.H (21.7%), H.N/N.H (13.6%), and H.O/O.H (10.8%) interactions. The optimized structure calculated using density functional theory (DFT) at the B3LYP/ 6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated HOMO–LUMO energy gap is 5.0452 eV.
    Keywords crystal structure ; pyrazolylacetamide ; hydrogen bond ; Chemistry ; QD1-999
    Language English
    Publishing date 2021-06-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Crystal structure and Hirshfeld surface analysis of 2-(2-oxo-3-phenyl-1,2,3,8a-tetrahydroquinoxalin-1-yl)ethyl acetate

    Nadeem Abad / Lhoussaine El Ghayati / Camille Kalonji Mubengayi / El Mokhtar Essassi / Savaş Kaya / Joel T. Mague / Youssef Ramli

    Acta Crystallographica Section E: Crystallographic Communications, Vol 77, Iss 6, Pp 643-

    2021  Volume 646

    Abstract: In the title molecule, C18H16N2O3, the dihydroquinoxaline moiety, with the exception of the N atom is essentially planar with the inner part of the methylpropanoate group (CH2—CH2—O) nearly perpendicular to it. In the crystal, inversion dimers formed by ... ...

    Abstract In the title molecule, C18H16N2O3, the dihydroquinoxaline moiety, with the exception of the N atom is essentially planar with the inner part of the methylpropanoate group (CH2—CH2—O) nearly perpendicular to it. In the crystal, inversion dimers formed by C—H.O hydrogen bonds are connected into oblique stacks by π-stacking and C—H.π(ring) interactions.
    Keywords crystal structure ; dihydroquinoxaline ; hydrogen bond ; π-stacking ; c—h.π(ring) ; Chemistry ; QD1-999
    Language English
    Publishing date 2021-06-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Crystal structure, Hirshfeld surface analysis and density functional theory study of benzyl 2-oxo-1-(prop-2-yn-1-yl)-1,2-dihydroquinoline-4-carboxylate

    Younos Bouzian / Karim Chkirate / Joel T. Mague / Fares Hezam Al-Ostoot / Noureddine Hammou Ahabchane / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 77, Iss 8, Pp 824-

    2021  Volume 828

    Abstract: The title molecule, C20H15NO3, adopts a Z-shaped conformation with the carboxyl group nearly coplanar with the dihydroquinoline unit. In the crystal, corrugated layers are formed by C—H.O hydrogen bonds and are stacked by C—H.π(ring) interactions. ... ...

    Abstract The title molecule, C20H15NO3, adopts a Z-shaped conformation with the carboxyl group nearly coplanar with the dihydroquinoline unit. In the crystal, corrugated layers are formed by C—H.O hydrogen bonds and are stacked by C—H.π(ring) interactions. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H.H (43.3%), H.C/C.H (26.6%) and H.O/O.H (16.3%) interactions. The optimized structure calculated using density functional theory at the B3LYP/ 6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated HOMO–LUMO energy gap is 4.0319 eV.
    Keywords crystal structure ; alkyne ; dihydroquinoline ; hydrogen bond ; hirshfeld surface analysis ; Chemistry ; QD1-999
    Language English
    Publishing date 2021-08-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Crystal structure and Hirshfeld surface analysis of a new benzodiazepine derivative

    Karim Chkirate / Sevgi Kansiz / Khalid Karrouchi / Joel T. Mague / Necmi Dege / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 75, Iss 1, Pp 33-

    4-dichloromethyl-2,3-dihydro-1H-1,5-benzodiazepin-2-one

    2019  Volume 37

    Abstract: In the title compound, C10H8Cl2N2O, the seven-membered diazepine ring adopts a boat-shaped conformation. The mean planes of the two rings of the benzodiazepine unit are inclined to each other by 22.05 (6)°. In the crystal, molecules are linked by pairs ... ...

    Abstract In the title compound, C10H8Cl2N2O, the seven-membered diazepine ring adopts a boat-shaped conformation. The mean planes of the two rings of the benzodiazepine unit are inclined to each other by 22.05 (6)°. In the crystal, molecules are linked by pairs of N—H.O hydrogen bonds, forming inversion dimers with an R22(8) ring motif. The dimers are linked by C—H.π interactions, forming layers lying parallel to (10\overline{1}). The roles of the intermolecular interactions in the crystal packing were clarified using Hirshfeld surface analysis; the most important contributions are from Cl.H/H.Cl (30.5%) and H.H (22.5%) interactions.
    Keywords crystal structure ; benzodiazepin-2-one ; phase-transfer catalysis ; hydrogen bonding ; C—H.π(ring) interaction ; Hirshfeld surface analysis ; Chemistry ; QD1-999
    Language English
    Publishing date 2019-01-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Crystal structure, DFT study and Hirshfeld surface analysis of ethyl 6-chloro-2-ethoxyquinoline-4-carboxylate

    Younos Bouzian / Khalid Karrouchi / El Hassane Anouar / Rachid Bouhfid / Suhana Arshad / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 75, Iss 6, Pp 912-

    2019  Volume 916

    Abstract: In the title quinoline derivative, C14H14ClNO3, there is an intramolecular C—H.O hydrogen bond forming an S(6) graph-set motif. The molecule is essentially planar with the mean plane of the ethyl acetate group making a dihedral angle of 5.02 (3)° with ... ...

    Abstract In the title quinoline derivative, C14H14ClNO3, there is an intramolecular C—H.O hydrogen bond forming an S(6) graph-set motif. The molecule is essentially planar with the mean plane of the ethyl acetate group making a dihedral angle of 5.02 (3)° with the ethyl 6-chloro-2-ethoxyquinoline mean plane. In the crystal, offset π–π interactions with a centroid-to-centroid distance of 3.4731 (14) Å link inversion-related molecules into columns along the c-axis direction. Hirshfeld surface analysis indicates that H.H contacts make the largest contribution (50.8%) to the Hirshfeld surface.
    Keywords crystal structure ; quinoline ; offset π–π interactions ; Hirshfeld surface analysis ; DFT ; Chemistry ; QD1-999
    Language English
    Publishing date 2019-06-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Crystal structure, Hirshfeld surface analysis and interaction energy, DFT and antibacterial activity studies of ethyl 2-[(2Z)-2-(2-chlorobenzylidene)-3-oxo-3,4-dihydro-2H-1,4-benzothiazin-4-yl]acetate

    Ghizlane Sebbar / Ellouz Mohamed / Tuncer Hökelek / Joel T. Mague / Nada Kheira Sebbar / El Mokhtar Essassi / Bouchra Belkadi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 76, Iss 5, Pp 629-

    2020  Volume 636

    Abstract: The title compound, C19H16ClNO3S, consists of chlorophenyl methylidene and dihydrobenzothiazine units linked to an acetate moiety, where the thiazine ring adopts a screw-boat conformation. In the crystal, two sets of weak C—HPh.ODbt (Ph = phenyl and Dbt = ...

    Abstract The title compound, C19H16ClNO3S, consists of chlorophenyl methylidene and dihydrobenzothiazine units linked to an acetate moiety, where the thiazine ring adopts a screw-boat conformation. In the crystal, two sets of weak C—HPh.ODbt (Ph = phenyl and Dbt = dihydrobenzothiazine) hydrogen bonds form layers of molecules parallel to the bc plane. The layers stack along the a-axis direction with intercalation of the ester chains. The crystal studied was a two component twin with a refined BASF of 0.34961 (5). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H.H (37.5%), H.C/C.H (24.6%) and H.O/O.H (16.7%) interactions. Hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, C—HPh.ODbt hydrogen bond energies are 38.3 and 30.3 kJ mol−1. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. Moreover, the antibacterial activity of the title compound has been evaluated against gram-positive and gram-negative bacteria.
    Keywords crystal structure ; hydrogen bond ; dihydrobenzothiazine ; antibacterial activity ; hirshfeld surface ; Chemistry ; QD1-999
    Subject code 540
    Language English
    Publishing date 2020-05-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Crystal structure and Hirshfeld surface analysis of hexyl 1-hexyl-2-oxo-1,2-dihydroquinoline-4-carboxylate

    Younos Bouzian / Sevgi Kansiz / Lhassane Mahi / Noureddine Hamou Ahabchane / Joel T. Mague / Necmi Dege / Khalid Karrouchi / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 76, Iss 5, Pp 642-

    2020  Volume 645

    Abstract: The asymmetric unit of the title compound, C22H31NO3, comprises of one molecule. The molecule is not planar, with the carboxylate ester group inclined by 33.47 (4)° to the heterocyclic ring. Individual molecules are linked by aromaticC—H.Ocarbonyl ... ...

    Abstract The asymmetric unit of the title compound, C22H31NO3, comprises of one molecule. The molecule is not planar, with the carboxylate ester group inclined by 33.47 (4)° to the heterocyclic ring. Individual molecules are linked by aromaticC—H.Ocarbonyl hydrogen bonds into chains running parallel to [001]. Slipped π–π stacking interactions between quinoline moieties link these chains into layers extending parallel to (100). Hirshfeld surface analysis, two-dimensional fingerprint plots and molecular electrostatic potential surfaces were used to quantify the intermolecular interactions present in the crystal, indicating that the most important contributions for the crystal packing are from H.H (72%), O.H/H.O (14.5%) and C.H/H.C (5.6%) interactions.
    Keywords crystal structure ; dihydroquinoline ; aliphatic chains ; π-stacking ; hirshfeld surface analysis ; Chemistry ; QD1-999
    Language English
    Publishing date 2020-05-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Crystal structure, Hirshfeld surface analysis and interaction energy, DFT and antibacterial activity studies of (Z)-4-hexyl-2-(4-methylbenzylidene)-2H-benzo[b][1,4]thiazin-3(4H)-one

    Ghizlane Sebbar / Brahim Hni / Tuncer Hökelek / Joel T. Mague / Nada Kheira Sebbar / Bouchra Belkadi / El Mokhtar Essassi

    Acta Crystallographica Section E: Crystallographic Communications, Vol 76, Iss 6, Pp 889-

    2020  Volume 895

    Abstract: The title compound, C22H25NOS, consists of methylbenzylidene and benzothiazine units linked to a hexyl moiety, where the thiazine ring adopts a screw-boat conformation. In the crystal, inversion dimers are formed by weak C—HMthn.OBnzthz hydrogen bonds ... ...

    Abstract The title compound, C22H25NOS, consists of methylbenzylidene and benzothiazine units linked to a hexyl moiety, where the thiazine ring adopts a screw-boat conformation. In the crystal, inversion dimers are formed by weak C—HMthn.OBnzthz hydrogen bonds and are linked into chains extending along the a-axis direction by weak C—HBnz.OBnzthz (Bnz = benzene, Bnzthz = benzothiazine and Mthn = methine) hydrogen bonds. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H.H (59.2%) and H.C/C.H (27.9%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, the C—HBnz.OBnzthz and C—HMthn.OBnzthz hydrogen-bond energies are 75.3 and 56.5 kJ mol−1, respectively. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO—LUMO behaviour was elucidated to determine the energy gap. Moreover, the antibacterial activity of the title compound was evaluated against gram-positive and gram-negative bacteria.
    Keywords crystal structure ; hydrogen bond ; benzothiazine ; antibacterial activity ; hirshfeld surface ; Chemistry ; QD1-999
    Subject code 540
    Language English
    Publishing date 2020-06-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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