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Article ; Online: Modelling of technical, environmental, and economic evaluations of the effect of the organic loading rate in semi-continuous anaerobic digestion of pre-treated organic fraction municipal solid waste.

Francesca, Demichelis / Elisa, Robotti / Alessandro, Deorsola Fabio / Emilio, Marengo / Tonia, Tommasi / Debora, Fino

Environmental pollution (Barking, Essex : 1987)

2024 Volume 344, Page(s) 123417

Abstract: The study concerned technical feasibility, economic profitability, and carbon footprint (CF) analysis of semi-continuous anaerobic digestion (sAD) of organic fraction of municipal solid waste (OFMSW). The research assessed the pre-treatment effect on sAD ...

Abstract	The study concerned technical feasibility, economic profitability, and carbon footprint (CF) analysis of semi-continuous anaerobic digestion (sAD) of organic fraction of municipal solid waste (OFMSW). The research assessed the pre-treatment effect on sAD by varying organic loading rates (OLR) from 3.38 to 6.75 kgvs/m
MeSH term(s)	Cost-Benefit Analysis ; Solid Waste ; Anaerobiosis ; Algorithms ; Hydrodynamics ; Bioreactors ; Refuse Disposal ; Methane
Chemical Substances	Solid Waste ; Methane (OP0UW79H66)
Language	English
Publishing date	2024-01-20
Publishing country	England
Document type	Journal Article
ZDB-ID	280652-6
ISSN	1873-6424 ; 0013-9327 ; 0269-7491
ISSN (online)	1873-6424
ISSN	0013-9327 ; 0269-7491
DOI	10.1016/j.envpol.2024.123417
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Article ; Online: Non-Invasive Paleo-Metabolomics and Paleo-Proteomics Analyses Reveal the Complex Funerary Treatment of the Early 18th Dynasty Dignitary NEBIRI (QV30)

Elettra Barberis / Marcello Manfredi / Enrico Ferraris / Raffaella Bianucci / Emilio Marengo

Molecules, Vol 27, Iss 7208, p

2022 Volume 7208

Abstract: Biochemical investigations were carried out on the embalmed head of Nebiri (Museo Egizio, Turin; S-5109)—an 18th Dynasty Ancient Egyptian dignitary—and on the canopic jar containing his lungs (Museo Egizio, Turin; S. 5111/02) with the aim of ... ...

Abstract	Biochemical investigations were carried out on the embalmed head of Nebiri (Museo Egizio, Turin; S-5109)—an 18th Dynasty Ancient Egyptian dignitary—and on the canopic jar containing his lungs (Museo Egizio, Turin; S. 5111/02) with the aim of characterizing the organ’s (lung) specific paleo-proteins and of identifying the compounds used in his embalming “recipe”. The application of a functionalized film method allowed us to perform a non-invasive sampling. Paleo-proteomics confirmed the presence of lung tissue-specific proteins (organ specific) as well as the presence of proteins linked to severe inflammation. Paleoproteomics and paleometabolomics further allowed the identification of the main components of Nebiri’s embalming recipe: animal fats and glue, balms, essential oils, aromatic plants, heated Pistacia, and coniferous resins. Both the use of Pistacia and coniferous resins in an early 18th Dynasty individual confirm Nebiri’s high social status. The technique applied offers a targeted approach to the chemical characterization of human tissues, embalming compounds, and organic materials layering in pottery. The ability of the functionalized film method to harvest all types of compounds, from macromolecules (i.e., proteins) to small molecules (i.e., organic acids) opens a new path in the study of ancient material culture; furthermore, it allows to perform untargeted analysis, which is necessary when no a priori information is available.
Keywords	non-invasive chemical analyses ; paleo-proteomics ; paleo-metabolomics ; New Kingdom ; Nebiri ; Organic chemistry ; QD241-441
Subject code	540
Language	English
Publishing date	2022-10-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Proteome and Physiological Characterization of Halotolerant Nodule Endophytes

Giorgia Novello / Elisa Gamalero / Nadia Massa / Patrizia Cesaro / Guido Lingua / Valeria Todeschini / Alice Caramaschi / Francesco Favero / Davide Corà / Marcello Manfredi / Emilio Marengo / Micaela Pelagi / Loredana Pangaro / Giuseppina Caffiero / Fulvia Milano / Elisa Bona

Microorganisms, Vol 10, Iss 890, p

The Case of Rahnella aquatilis and Serratia plymuthica

2022 Volume 890

Abstract: Bacterial endophytes were isolated from nodules of pea and fava bean. The strains were identified and characterized for plant beneficial activities (phosphate solubilization, synthesis of indole acetic acid and siderophores) and salt tolerance. Based on ... ...

Abstract	Bacterial endophytes were isolated from nodules of pea and fava bean. The strains were identified and characterized for plant beneficial activities (phosphate solubilization, synthesis of indole acetic acid and siderophores) and salt tolerance. Based on these data, four strains of Rahnella aquatilis and three strains of Serratia plymuthica were selected. To shed light on the mechanisms underlying salt tolerance, the proteome of the two most performant strains (Ra4 and Sp2) grown in the presence or not of salt was characterized. The number of proteins expressed by the endophytes was higher in the presence of salt. The modulated proteome consisted of 302 (100 up-regulated, 202 down-regulated) and 323 (206 up-regulated, 117 down-regulated) proteins in Ra4 and Sp2, respectively. Overall, proteins involved in abiotic stress responses were up-regulated, while those involved in metabolism and flagellum structure were down-regulated. The main up-regulated proteins in Sp2 were thiol: disulfide interchange protein DsbA, required for the sulfur binding formation in periplasmic proteins, while in Ra4 corresponded to the soluble fraction of ABC transporters, having a role in compatible solute uptake. Our results demonstrated a conserved response to salt stress in the two taxonomically related species.
Keywords	bacterial endophytes ; legume nodules ; salt tolerance ; plant beneficial activities ; proteome ; Biology (General) ; QH301-705.5
Subject code	580
Language	English
Publishing date	2022-04-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Calcineurin Controls Cellular Prion Protein Expression in Mouse Astrocytes

Giulia Dematteis / Elena Restelli / Virginia Vita Vanella / Marcello Manfredi / Emilio Marengo / Marco Corazzari / Armando A. Genazzani / Roberto Chiesa / Dmitry Lim / Laura Tapella

Cells, Vol 11, Iss 609, p

2022 Volume 609

Abstract: Prion diseases arise from the conformational conversion of the cellular prion protein (PrP C ) into a self-replicating prion isoform (PrP Sc ). Although this process has been studied mostly in neurons, a growing body of evidence suggests that astrocytes ... ...

Abstract	Prion diseases arise from the conformational conversion of the cellular prion protein (PrP C ) into a self-replicating prion isoform (PrP Sc ). Although this process has been studied mostly in neurons, a growing body of evidence suggests that astrocytes express PrP C and are able to replicate and accumulate PrP Sc . Currently, prion diseases remain incurable, while downregulation of PrP C represents the most promising therapy due to the reduction of the substrate for prion conversion. Here we show that the astrocyte-specific genetic ablation or pharmacological inhibition of the calcium-activated phosphatase calcineurin (CaN) reduces PrP C expression in astrocytes. Immunocytochemical analysis of cultured CaN-KO astrocytes and isolation of synaptosomal compartments from the hippocampi of astrocyte-specific CaN-KO (ACN-KO) mice suggest that PrP C is downregulated both in vitro and in vivo. The downregulation occurs without affecting the glycosylation of PrP C and without alteration of its proteasomal or lysosomal degradation. Direct assessment of the protein synthesis rate and shotgun mass spectrometry proteomics analysis suggest that the reduction of PrP C is related to the impairment of global protein synthesis in CaN-KO astrocytes. When WT-PrP and PrP-D177N, a mouse homologue of a human mutation associated with the inherited prion disease fatal familial insomnia, were expressed in astrocytes, CaN-KO astrocytes showed an aberrant localization of both WT-PrP and PrP-D177N variants with predominant localization to the Golgi apparatus, suggesting that ablation of CaN affects both WT and mutant PrP proteins. These results provide new mechanistic details in relation to the regulation of PrP expression in astrocytes, suggesting the therapeutic potential of astroglial cells.
Keywords	astrocytes ; calcineurin ; FK506 ; prion protein ; protein synthesis ; calcium ; Biology (General) ; QH301-705.5
Subject code	333
Language	English
Publishing date	2022-02-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Outbreak of Oleander ( Nerium oleander ) Poisoning in Dairy Cattle

Luigi Ceci / Flavia Girolami / Maria Teresa Capucchio / Elena Colombino / Carlo Nebbia / Fabio Gosetti / Emilio Marengo / Fabrizio Iarussi / Grazia Carelli

Toxins, Vol 12, Iss 471, p

Clinical and Food Safety Implications

2020 Volume 471

Abstract: Oleander is a spontaneous shrub widely occurring in Mediterranean regions. Poisoning is sporadically reported in livestock, mainly due to the ingestion of leaves containing toxic cardiac glycosides (primarily oleandrin). In this study, 50 lactating ... ...

Abstract	Oleander is a spontaneous shrub widely occurring in Mediterranean regions. Poisoning is sporadically reported in livestock, mainly due to the ingestion of leaves containing toxic cardiac glycosides (primarily oleandrin). In this study, 50 lactating Fleckvieh cows were affected after being offered a diet containing dry oleander pruning wastes accidentally mixed with fodder. Clinical examination, electrocardiogram, and blood sampling were conducted. Dead animals were necropsied, and heart, liver, kidney, spleen, and intestine were submitted to histological investigation. Oleandrin detection was performed through ultra-high performance liquid chromatography-tandem mass spectrometry in blood, serum, liver, heart, milk, and cheese samples. Severe depression, anorexia, ruminal atony, diarrhea, serous nasal discharge, tachycardia, and irregular heartbeat were the most common clinical signs. The first animal died within 48 h, and a total of 13 cows died in 4 days. Disseminated hyperemia and hemorrhages, multifocal coagulative necrosis of the cardiac muscle fibers, and severe and diffuse enteritis were suggestive of oleander poisoning. The diagnosis was confirmed by the presence of oleandrin in serum, liver, heart, milk, and cheese. Our results confirm the high toxicity of oleander in cattle and report for the first time the transfer into milk and dairy products, suggesting a potential risk for the consumers.
Keywords	bovine ; toxicosis ; dairy products ; public health ; risk ; Medicine ; R
Subject code	630 ; 610
Language	English
Publishing date	2020-07-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Photodegradation of the pure and formulated alpha-cypermethrin insecticide gives different products

Gosetti, Fabio / Bianca Bolfi / Elisa Robotti / Emilio Marengo / Marcello Manfredi / Ugo Chiuminatto

Environmental chemistry letters. 2018 June, v. 16, no. 2

2018

Abstract: Alpha-cypermethrin is a broad-spectrum insecticide widely used in the treatment of rice crops, mainly commercialized as a CONTEST® formulation. The photodegradation of alpha-cypermethrin and of the commercial formulation has not yet been systematically ... ...

Abstract	Alpha-cypermethrin is a broad-spectrum insecticide widely used in the treatment of rice crops, mainly commercialized as a CONTEST® formulation. The photodegradation of alpha-cypermethrin and of the commercial formulation has not yet been systematically investigated in paddy water under natural conditions. Here, paddy water solutions of alpha-cypermethrin and CONTEST® formulation at 5.0 mg L−1 were irradiated under simulated sunlight for 10 days. Hydrolysis experiments were carried out on the same solutions preserved in the dark. Analysis by ultra-high-performance liquid chromatography–tandem mass spectrometry was developed for the identification of photodegradation products. Results show that degradation of pure alpha-cypermethrin and the formulation counterpart produces both common and different photodegradation products. Five out eleven photodegradation products were identified for the first time, in particular three in the alpha-cypermethrin paddy water solution and four in the formulation. Our findings underline the importance of carrying out photodegradation experiments directly on the commercial formulation, since degradation products could be different from the pure insecticide.
Keywords	crops ; cypermethrin ; hydrolysis ; lighting ; liquid chromatography ; paddies ; photolysis ; rice ; tandem mass spectrometry
Language	English
Dates of publication	2018-06
Size	p. 581-590.
Publishing place	Springer International Publishing
Document type	Article
ZDB-ID	2107984-5
ISSN	1610-3661 ; 1610-3653
ISSN (online)	1610-3661
ISSN	1610-3653
DOI	10.1007/s10311-017-0685-4
Database	NAL-Catalogue (AGRICOLA)

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Article: Thylakoid proteome modulation in pea plants grown at different irradiances: quantitative proteomic profiling in a non‐model organism aided by transcriptomic data integration

Albanese, Pascal / Marcello Manfredi / Angela Re / Emilio Marengo / Guido Saracco / Cristina Pagliano

plant journal. 2018 Nov., v. 96, no. 4

2018

Abstract: Plant thylakoid membranes contain hundreds of proteins that closely interact to cope with ever‐changing environmental conditions. We investigated how Pisum sativum L. (pea) grown at different irradiances optimizes light‐use efficiency through the ... ...

Abstract	Plant thylakoid membranes contain hundreds of proteins that closely interact to cope with ever‐changing environmental conditions. We investigated how Pisum sativum L. (pea) grown at different irradiances optimizes light‐use efficiency through the differential accumulation of thylakoid proteins. Thylakoid membranes from plants grown under low (LL), moderate (ML) and high (HL) light intensity were characterized by combining chlorophyll fluorescence measurements with quantitative label‐free proteomic analysis. Protein sequences retrieved from available transcriptomic data considerably improved thylakoid proteome profiling, increasing the quantifiable proteins from 63 to 194. The experimental approach used also demonstrates that this integrative omics strategy is powerful for unravelling protein isoforms and functions that are still unknown in non‐model organisms. We found that the different growth irradiances affect the electron transport kinetics but not the relative abundance of photosystems (PS) I and II. Two acclimation strategies were evident. The behaviour of plants acclimated to LL was compared at higher irradiances: (i) in ML, plants turn on photoprotective responses mostly modulating the PSII light‐harvesting capacity, either accumulating Lhcb4.3 or favouring the xanthophyll cycle; (ii) in HL, plants reduce the pool of light‐harvesting complex II and enhance the PSII repair cycle. When growing at ML and HL, plants accumulate ATP synthase, boosting both cyclic and linear electron transport by finely tuning the ΔpH across the membrane and optimizing protein trafficking by adjusting the thylakoid architecture. Our results provide a quantitative snapshot of how plants coordinate light harvesting, electron transport and protein synthesis by adjusting the thylakoid membrane proteome in a light‐dependent manner.
Keywords	H+/K+-exchanging ATPase ; H-transporting ATP synthase ; Pisum sativum ; acclimation ; amino acid sequences ; chlorophyll ; electron transfer ; environmental factors ; light harvesting complex ; light intensity ; lutein ; peas ; photosystem II ; protein isoforms ; protein synthesis ; protein transport ; proteome ; proteomics ; radiation use efficiency ; thylakoids ; transcriptomics
Language	English
Dates of publication	2018-11
Size	p. 786-800.
Publishing place	John Wiley & Sons, Ltd
Document type	Article
Note	JOURNAL ARTICLE
ZDB-ID	1088037-9
ISSN	1365-313X ; 0960-7412
ISSN (online)	1365-313X
ISSN	0960-7412
DOI	10.1111/tpj.14068
Database	NAL-Catalogue (AGRICOLA)

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Article: Cellulomonas fimi secretomes: In vivo and in silico approaches for the lignocellulose bioconversion

Spertino, Stefano / Chiara Cattaneo / Emilio Marengo / Lara Boatti / Marcello Manfredi / Maria Cavaletto / Sara Icardi

Journal of biotechnology. 2018 Mar. 20, v. 270

2018

Abstract: Lignocellulose degradation is a challenging step for value added products and biofuels production. Cellulomonas fimi secretes complex mixtures of carbohydrate active enzymes (CAZymes) which synergistically degrade cellulose and hemicelluloses. Their ... ...

Abstract	Lignocellulose degradation is a challenging step for value added products and biofuels production. Cellulomonas fimi secretes complex mixtures of carbohydrate active enzymes (CAZymes) which synergistically degrade cellulose and hemicelluloses. Their characterization may provide new insights for enzymatic cocktails implementation. Bioinformatic analysis highlighted 1127 secreted proteins, constituting the in silico secretome, graphically represented in a 2DE map. According to Blast2GO functional annotation, many of these are involved in carbohydrates metabolism. In vivo secretomes were obtained, growing C. fimi on glucose, CMC or wheat straw for 24â¯h. Zymography revealed degradative activity on carbohydrates and proteomic analysis identified some CAZymes, only in secretomes obtained with CMC and wheat straw. An interaction between cellobiohydrolases is proposed as a strategy adopted by soluble multimodular cellulases. Such approach can be crucial for a better characterization and industrial exploitation of the synergism among C. fimi enzymes.
Keywords	biofuels ; bioinformatics ; biotransformation ; cellulases ; Cellulomonas fimi ; cellulose ; fuel production ; glucose ; hemicellulose ; lignocellulose ; protein secretion ; proteomics ; synergism ; value-added products ; wheat straw
Language	English
Dates of publication	2018-0320
Size	p. 21-29.
Publishing place	Elsevier B.V.
Document type	Article
ZDB-ID	843647-2
ISSN	1873-4863 ; 0168-1656 ; 1389-0352
ISSN (online)	1873-4863
ISSN	0168-1656 ; 1389-0352
DOI	10.1016/j.jbiotec.2018.01.018
Database	NAL-Catalogue (AGRICOLA)

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Zs.A 2299: Show issues

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Article ; Online: Identification of Potential Leukocyte Biomarkers Related to Drug Recovery of CFTR

Marco Pedrazzi / Silvia Vercellone / Elettra Barberis / Michela Capraro / Roberta De Tullio / Federico Cresta / Rosaria Casciaro / Carlo Castellani / Mauro Patrone / Emilio Marengo / Paola Lecca / Paola Melotti / Claudio Sorio / Marcello Manfredi / Monica Averna

International Journal of Molecular Sciences, Vol 22, Iss 3928, p

Clinical Applications in Cystic Fibrosis

2021 Volume 3928

Abstract: The aim of this study was the identification of specific proteomic profiles, related to a restored cystic fibrosis transmembrane conductance regulator (CFTR) activity in cystic fibrosis (CF) leukocytes before and after ex vivo treatment with the ... ...

Abstract	The aim of this study was the identification of specific proteomic profiles, related to a restored cystic fibrosis transmembrane conductance regulator (CFTR) activity in cystic fibrosis (CF) leukocytes before and after ex vivo treatment with the potentiator VX770. We used leukocytes, isolated from CF patients carrying residual function mutations and eligible for Ivacaftor therapy, and performed CFTR activity together with proteomic analyses through micro-LC–MS. Bioinformatic analyses of the results obtained revealed the downregulation of proteins belonging to the leukocyte transendothelial migration and regulation of actin cytoskeleton pathways when CFTR activity was rescued by VX770 treatment. In particular, we focused our attention on matrix metalloproteinase 9 (MMP9), because the high expression of this protease potentially contributes to parenchyma lung destruction and dysfunction in CF. Thus, the downregulation of MMP9 could represent one of the possible positive effects of VX770 in decreasing the disease progression, and a potential biomarker for the prediction of the efficacy of therapies targeting the defect of Cl − transport in CF.
Keywords	PBMCs ; Ivacaftor ; VX770 ; MMP9 ; proteomics ; monocytes ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
Language	English
Publishing date	2021-04-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Understanding protection from SARS-CoV-2 using metabolomics

Elettra Barberis / Elia Amede / Matteo Tavecchia / Emilio Marengo / Micol G. Cittone / Eleonora Rizzi / Anita R. Pedrinelli / Stelvio Tonello / Rosalba Minisini / Mario Pirisi / Marcello Manfredi / Pier Paolo Sainaghi

Scientific Reports, Vol 11, Iss 1, Pp 1-

2021 Volume 10

Abstract: Abstract The COVID-19 pandemic is still raging in most countries. Although the recent mass vaccination campaign has opened a new chapter in the battle against SARS-CoV-2, the world is still far from herd immunity. There is an urgent need to identify ... ...

Abstract	Abstract The COVID-19 pandemic is still raging in most countries. Although the recent mass vaccination campaign has opened a new chapter in the battle against SARS-CoV-2, the world is still far from herd immunity. There is an urgent need to identify healthy people at high risk of contracting COVID-19, as well as supplements and nutraceuticals that can reduce the risk of infection or mitigate symptoms. In the present study, a metabolic phenotype that could protect individuals from SARS-CoV-2 infection or predispose them to developing COVID-19 was investigated. Untargeted metabolomics was performed on serum samples collected from 51 healthcare workers who were in good health at the beginning of the COVID-19 outbreak in Italy, and who were later exposed to the same risk of developing COVID-19. Half of them developed COVID-19 within three weeks of the blood collection. Our results demonstrate the presence of a specific signature associated with protection from SARS-CoV-2. Circulating monolaurin, which has well-known antiviral and antibacterial properties, was higher in protected subjects, suggesting a potential defensive role against SARS-CoV-2 infection; thus, dietary supplements could boost the immune system against this infection. In addition, our data demonstrate that people with higher levels of cholesterol are at higher risk of developing COVID-19. The present study demonstrates that metabolomics can be of great help for developing personalized medicine and for supporting public healthcare strategies. Studies with larger cohorts of subjects are necessary to confirm our findings.
Keywords	Medicine ; R ; Science ; Q
Language	English
Publishing date	2021-07-01T00:00:00Z
Publisher	Nature Portfolio
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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