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  1. Article: The Effect of University Students' Levels of Knowledge about HPV Infection and the HPV Vaccine on Their Health Beliefs: Health Sciences Students.

    Ergün, Sibel

    Vaccines

    2023  Volume 11, Issue 6

    Abstract: The aim of this study was to determine health sciences students' levels of knowledge about HPV infection and the vaccine and their health beliefs, to compare them in terms of individual characteristics, and to examine the relationship between their ... ...

    Abstract The aim of this study was to determine health sciences students' levels of knowledge about HPV infection and the vaccine and their health beliefs, to compare them in terms of individual characteristics, and to examine the relationship between their knowledge of the HPV infection/vaccine and their health beliefs. The data of the study were collected from Health Sciences Faculty students through a face-to-face setting (n: 824). The data tools used in the study were the identification form, the health belief model scale for human papillomavirus infection and vaccination, and the human papillomavirus knowledge scale. The results showed that (1) although the students' levels of knowledge about HPV infection and the vaccine were low, (2) they did perceive HPV infection to be a severe problem. According to the multilinear regression analysis performed, the main predictor of the perceived severity (β = 0.29; 95% Cl: 0.04, 0.07), obstacle (β = 0.21; 95% Cl: 0.01, 0.04), and sensitivity (β = 0.22; 95% Cl: 0.02, 0.06) subscales of the HBMS-HPVV was general HPV knowledge. It was also determined that as the students' knowledge about HPV increased, their health belief levels regarding HPV infection and the vaccine increased as well (n: 824). In conclusion, for nurses and other healthcare professionals to be effective in informing individuals, they should have knowledge of HPV infection and the vaccine. In this context, the necessary education and advice about the importance of HPV infection and the vaccine should be provided to students receiving education in the field of healthcare.
    Language English
    Publishing date 2023-06-20
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2703319-3
    ISSN 2076-393X
    ISSN 2076-393X
    DOI 10.3390/vaccines11061126
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The relationship between caregiver burden and self-care agency of pregnant women with 0-6-year-old children.

    Ergün, Sibel

    Nursing open

    2021  Volume 9, Issue 2, Page(s) 1052–1059

    Abstract: Aim: This study aims to determine the relationship between the burden of care and self-care abilities of pregnant women with 0-6-year-old children and the factors affecting them.: Design: A cross-sectional questionnaire survey.: Methods: This ... ...

    Abstract Aim: This study aims to determine the relationship between the burden of care and self-care abilities of pregnant women with 0-6-year-old children and the factors affecting them.
    Design: A cross-sectional questionnaire survey.
    Methods: This study consisted of 348 pregnant women over the age of 18, with children between the ages of 0-6.
    Results: The study determined that the self-care ability mean scores of mothers who have two or more children between the ages of 0-6 were low and the caregiver burden mean scores were high. The researcher found a negative correlation between the self-care ability scale scores and caregiver burden scale scores of pregnant women included in the study. These results are statistically significant and valuable in terms of revealing information about the caregiver burden and self-care ability of pregnant women with 0-6-year-old children.
    MeSH term(s) Adult ; Caregiver Burden ; Caregivers ; Child ; Child, Preschool ; Cross-Sectional Studies ; Female ; Humans ; Infant ; Infant, Newborn ; Pregnancy ; Pregnant Women ; Self Care
    Language English
    Publishing date 2021-11-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2809556-X
    ISSN 2054-1058 ; 2054-1058
    ISSN (online) 2054-1058
    ISSN 2054-1058
    DOI 10.1002/nop2.1142
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Repair of eyelid margin defects with diagonal tarsal suture technique.

    Berk Ergun, Şule

    International ophthalmology

    2023  Volume 43, Issue 9, Page(s) 3373–3376

    Abstract: Purpose: Evaluation of the results of diagonal suture technique in full-thickness eyelid margin repair in the early recovery period.: Materials and methods: In this study, full-thickness eyelid margin repair cases using a diagonal suture technique ... ...

    Abstract Purpose: Evaluation of the results of diagonal suture technique in full-thickness eyelid margin repair in the early recovery period.
    Materials and methods: In this study, full-thickness eyelid margin repair cases using a diagonal suture technique between February 2016 and March 2020 were reviewed retrospectively. Cases due to trauma were not included in the study. Patients were evaluated on the 1st, 6th and 30th day following surgery. The demographic information of the patients, the surgery performed, the level of the lid margin (normal healing, notching), and the presence of tissue reaction (edema, redness, tissue separation, abscess formation) were recorded.
    Results: Nine (47.4%) out of 19 patients were female and 10 (52.6%) were male. Their ages ranged from 56 to 83 (median: 66). Of the 19 surgeries performed, 14 were Quickert, 3 were pentagon excision, and 2 were Lazy-T. Edema was observed in 3 cases (15.8%) on the first day. Tissue reaction was not observed in any of the cases in neither the first week nor the first month. Although the lid margin healed properly in each case, notching was observed on the inner surface of the lid margin on the 1st and 6th postoperative days in 1 (5.3%) patient. During the 30th-day follow-up visit, it was observed that the notching had decreased.
    Conclusion: The advantages of diagonal suture technique are having no sutures that may touch the cornea at the lid margin and resulting in a better cosmetic appearance in the early postoperative period. It is an easy, effective and reliable method to apply.
    MeSH term(s) Humans ; Male ; Female ; Retrospective Studies ; Eyelids/surgery ; Blepharoplasty/methods ; Suture Techniques ; Sutures
    Language English
    Publishing date 2023-05-17
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 800087-6
    ISSN 1573-2630 ; 0165-5701
    ISSN (online) 1573-2630
    ISSN 0165-5701
    DOI 10.1007/s10792-023-02744-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Development of a calculation software for 4πβ-γ digital coincidence counting and its application to

    Şahin, N K / Ergün, Ş

    Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine

    2021  Volume 172, Page(s) 109686

    Abstract: A unique calculation software has been developed for 4πβ-γ coincidence counting system that has been recently set up. The combination of the software and the hardware constitutes the measurement system. The developed coincidence counting software uses ... ...

    Abstract A unique calculation software has been developed for 4πβ-γ coincidence counting system that has been recently set up. The combination of the software and the hardware constitutes the measurement system. The developed coincidence counting software uses both of coincidence and anticoincidence methods. Activity calculations have been performed using unique algorithms generated for these methods. The main processing modules of the software are the raw data reading-writing module, energy spectrum composing module, energy filtering module, deadtime application module, coincidence and anticoincidence calculation modules and efficiency extrapolation module. The known activities of
    Language English
    Publishing date 2021-03-11
    Publishing country England
    Document type Journal Article
    ZDB-ID 1142596-9
    ISSN 1872-9800 ; 0883-2889 ; 0969-8043
    ISSN (online) 1872-9800
    ISSN 0883-2889 ; 0969-8043
    DOI 10.1016/j.apradiso.2021.109686
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Cross-Kingdom Gene regulation via miRNAs of Hypericum perforatum (St. John's wort) flower dietetically absorbed: An in silico approach to define potential biomarkers for prostate cancer.

    Ergün, Sercan

    Computational biology and chemistry

    2019  Volume 80, Page(s) 16–22

    Abstract: Prostate cancer (PCa) is the most frequent type of cancer in men. Hypericum perforatum (H. Perforatum) extract (HPE) administration provides remarkable decrease of PCa development. H. perforatum contains 7 conserved miRNAs (Hyp-miR-156a, Hyp-miR-156b, ... ...

    Abstract Prostate cancer (PCa) is the most frequent type of cancer in men. Hypericum perforatum (H. Perforatum) extract (HPE) administration provides remarkable decrease of PCa development. H. perforatum contains 7 conserved miRNAs (Hyp-miR-156a, Hyp-miR-156b, Hyp-miR-166, Hyp-miR-390, Hyp-miR-394, Hyp-miR-396 and Hyp-miR-414) with different targets. In this study, we aimed to investigate cross-kingdom gene regulation via miRNAs of H. perforatum flower dietetically absorbed in manner of an in silico approach to define potential biomarkers for PCa. psRNATarget database was used to find human genes targeted by 7 pre-defined H. perforatum miRNAs. We defined the mostly affected gene families from these miRNAs as ZNF, TMEM, SLC and FAM gene families. GeneMANIA database was used to define the most affected genes (TMEM41B and SLC4A7) from these 7 miRNAs. cBioPortal database was used to define alteration frequencies of TMEM41B and SLC4A7 on different types of PCa and to measure the mutual interaction potency and significance of co-occurence in PCa. This analysis showed that neuroendocrine prostate cancer (NEPC) had the highest total mutation frequency (22%) of TMEM41B and SLC4A7 genes. Also, TMEM41B and SLC4A7 genes had an average 2.1% pathway change potential among all different types of PCa. Moreover, TMEM41B and SLC4A7 gene pair was found significantly co-occurrent in PCa (p < 0.001). Finally, via GEPIA database, we used Spearman correlation analysis to measure the correlation degree of TMEM41B and SLC4A7 genes in PCa and found their significant correlation with PCa (p = 1.2 × 10
    MeSH term(s) Biomarkers ; Computer Simulation ; Flowers/genetics ; Gene Expression Regulation, Neoplastic ; Humans ; Hypericum/genetics ; Male ; Membrane Proteins/genetics ; MicroRNAs/genetics ; Mutation ; Prostatic Neoplasms/genetics ; RNA, Plant/genetics ; Sodium-Bicarbonate Symporters/genetics ; Software
    Chemical Substances Biomarkers ; Membrane Proteins ; MicroRNAs ; RNA, Plant ; SLC4A7 protein, human ; Sodium-Bicarbonate Symporters ; TMEM41B protein, human
    Language English
    Publishing date 2019-02-28
    Publishing country England
    Document type Journal Article
    ISSN 1476-928X
    ISSN (online) 1476-928X
    DOI 10.1016/j.compbiolchem.2019.02.010
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  6. Article ; Online: The relationship between DNA mismatch repair gene and other prognostic parameters in pancreatic adenocarcinoma.

    Urganci, Nil / Kepil, Nuray / Ergun, Sefa / Bakkaloglu, Oguz Kaan

    Journal of surgical oncology

    2024  Volume 129, Issue 5, Page(s) 876–884

    Abstract: The aim of the study was to determine DNA mismatch repair (MMR) proteins by immunohistochemically using MLH1, MSH2, MSH6, and PMS2 antibodies in patients diagnosed as pancreatic ductal adenocarcinoma and to assess its relationship with histopathological ... ...

    Abstract The aim of the study was to determine DNA mismatch repair (MMR) proteins by immunohistochemically using MLH1, MSH2, MSH6, and PMS2 antibodies in patients diagnosed as pancreatic ductal adenocarcinoma and to assess its relationship with histopathological and clinical prognostic parameters. Fifty cases with a diagnosis of pancreatic ductal adenocarcinoma who underwent surgical resection, were included in the study. Demographic and histopathological features of the patients were collected from the medical records. The relationships between microsatellite status and prognostic parameters were determined. The mean age of the patients was 66.5 ± 9.5 years (range: 47-87) and male/female ratio was 1.63 (31/19). No errors were detected in DNA MMR proteins in any of the cases, and were classified as microsatellite stable. The mean tumor diameter was 4.01 ± 1.77 cm and 74% of the tumors were localized in the pancreatic head. All of the cases had lymphatic invasion, whereas vascular invasion was detected in only 78% and perineural invasion in 98% of the patients. When the relationship between prognostic parameters and survival was evaluated, statistically significant correlation was observed in patient age and histopathological parameters such as tumor diameter, status of surgical margins, and vascular invasion (p < 0.05). Age, tumor size, presence of tumor at surgical margins, vascular invasion, and adjuvant treatment were correlated with survival. Although microsatellite instability was not detected in our cases, it is important to determine the microsatellite status by immunohistochemistry for predicting the chemotherapy response and determining the immunotherapy option in pancreatic adenocarcinomas.
    MeSH term(s) Humans ; Male ; Female ; Middle Aged ; Aged ; Aged, 80 and over ; Adenocarcinoma/genetics ; Adenocarcinoma/therapy ; Adenocarcinoma/metabolism ; Prognosis ; DNA Mismatch Repair ; Margins of Excision ; Pancreatic Neoplasms/genetics ; Pancreatic Neoplasms/therapy ; Carcinoma, Pancreatic Ductal/genetics ; Carcinoma, Pancreatic Ductal/therapy ; MutL Protein Homolog 1/genetics ; MutL Protein Homolog 1/metabolism ; MutS Homolog 2 Protein/genetics ; MutS Homolog 2 Protein/metabolism
    Chemical Substances MutL Protein Homolog 1 (EC 3.6.1.3) ; MutS Homolog 2 Protein (EC 3.6.1.3)
    Language English
    Publishing date 2024-01-04
    Publishing country United States
    Document type Journal Article
    ZDB-ID 82063-5
    ISSN 1096-9098 ; 0022-4790
    ISSN (online) 1096-9098
    ISSN 0022-4790
    DOI 10.1002/jso.27579
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  7. Article: Characteristics of Bacterial Biofilm Formation in Nasolacrimal Silicone Tubes Post-dacryocystorhinostomy.

    Berk Ergun, Şule / Has, Elif G / Akçelik, Nefise / Akçelik, Mustafa

    Cureus

    2024  Volume 16, Issue 3, Page(s) e56112

    Abstract: Purpose: To examine the biofilm formation characteristics of bacteria identified at the genus level in samples obtained from silicone tubes after dacryocystorhinostomy surgery.: Methods: In the study involving consecutive patients who underwent ... ...

    Abstract Purpose: To examine the biofilm formation characteristics of bacteria identified at the genus level in samples obtained from silicone tubes after dacryocystorhinostomy surgery.
    Methods: In the study involving consecutive patients who underwent dacryocystorhinostomy surgery at Ankara Bilkent City Hospital and whose silicone tubes were removed six months after surgery, between January 2023 and May 2023; the tubes were placed in glycerol-PBS (phosphate buffered saline) solution and cultured on descriptive selective media at the genus level. The biofilm-forming properties of the obtained isolates were examined in solid-air and liquid-air interphases.
    Results: As a result of the analysis of the samples taken from the patients,
    Conclusion: Since biofilms are considered potential factors in the pathogenesis of infectious and inflammatory diseases, they are a subject that needs to be thoroughly investigated. In our study, although there were no clinical infections in any of the patients, biofilm formation was detected in the patient samples. The fact that the bacteria exhibited moderate to strong biofilm formation characteristics suggests that these microorganisms could be persistent infectious agents.
    Language English
    Publishing date 2024-03-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2747273-5
    ISSN 2168-8184
    ISSN 2168-8184
    DOI 10.7759/cureus.56112
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  8. Article ; Online: Understanding the link between neurotropic viruses, BBB permeability, and MS pathogenesis.

    Rani, Annu / Ergün, Süleyman / Karnati, Srikanth / Jha, Hem Chandra

    Journal of neurovirology

    2024  Volume 30, Issue 1, Page(s) 22–38

    Abstract: Neurotropic viruses can infiltrate the CNS by crossing the blood-brain barrier (BBB) through various mechanisms including paracellular, transcellular, and "Trojan horse" mechanisms during leukocyte diapedesis. These viruses belong to several families, ... ...

    Abstract Neurotropic viruses can infiltrate the CNS by crossing the blood-brain barrier (BBB) through various mechanisms including paracellular, transcellular, and "Trojan horse" mechanisms during leukocyte diapedesis. These viruses belong to several families, including retroviruses; human immunodeficiency virus type 1 (HIV-1), flaviviruses; Japanese encephalitis (JEV); and herpesviruses; herpes simplex virus type 1 (HSV-1), Epstein-Barr virus (EBV), and mouse adenovirus 1 (MAV-1). For entering the brain, viral proteins act upon the tight junctions (TJs) between the brain microvascular endothelial cells (BMECs). For instance, HIV-1 proteins, such as glycoprotein 120, Nef, Vpr, and Tat, disrupt the BBB and generate a neurotoxic effect. Recombinant-Tat triggers amendments in the BBB by decreasing expression of the TJ proteins such as claudin-1, claudin-5, and zona occludens-1 (ZO-1). Thus, the breaching of BBB has been reported in myriad of neurological diseases including multiple sclerosis (MS). Neurotropic viruses also exhibit molecular mimicry with several myelin sheath proteins, i.e., antibodies against EBV nuclear antigen 1 (EBNA1) aa411-426 cross-react with MBP and EBNA1 aa385-420 was found to be associated with MS risk haplotype HLA-DRB1*150. Notably, myelin protein epitopes (PLP
    MeSH term(s) Blood-Brain Barrier/virology ; Blood-Brain Barrier/metabolism ; Blood-Brain Barrier/pathology ; Humans ; Animals ; Multiple Sclerosis/virology ; Multiple Sclerosis/metabolism ; Multiple Sclerosis/pathology ; Mice ; Tight Junctions/virology ; Tight Junctions/metabolism ; Capillary Permeability ; Endothelial Cells/virology ; Endothelial Cells/metabolism ; Endothelial Cells/pathology
    Language English
    Publishing date 2024-01-08
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 1283265-0
    ISSN 1538-2443 ; 1355-0284
    ISSN (online) 1538-2443
    ISSN 1355-0284
    DOI 10.1007/s13365-023-01190-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Direct Stochastic Optical Reconstruction Microscopy (dSTORM) of Peroxisomes.

    Klein, Teresa / Sauer, Markus / Ergün, Süleyman / Karnati, Srikanth

    Methods in molecular biology (Clifton, N.J.)

    2023  Volume 2643, Page(s) 85–92

    Abstract: Peroxisomes are central metabolic organelles whose maturation and function depend on efficient and accurate targeting of peroxisomal membrane proteins (PMPs). Ultrastructural imaging of the PMPs is a quite difficult task as it requires high spatial and ... ...

    Abstract Peroxisomes are central metabolic organelles whose maturation and function depend on efficient and accurate targeting of peroxisomal membrane proteins (PMPs). Ultrastructural imaging of the PMPs is a quite difficult task as it requires high spatial and temporal resolution. Further, the spatial resolution of conventional light microscopy is limited due to the diffraction of light. However, recent methodological developments in super resolution microscopy showed us to access the nanoscale regimes spatially allowing to elucidate the membrane structures of cell organelles. In this chapter, we present protocols used in our laboratory for the super-resolution imaging of the peroxisomal membrane protein 14 (PEX14p) by direct stochastic optical reconstruction microscopy (dSTORM).
    MeSH term(s) Microscopy/methods ; Peroxisomes ; Intracellular Membranes ; Membrane Proteins
    Chemical Substances Membrane Proteins
    Language English
    Publishing date 2023-03-23
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3048-8_6
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  10. Article ; Online: Clinically informative microRNAs for SARS-CoV-2 infection.

    Ergün, Sercan / Sankaranarayanan, Ramamoorthy / Petrović, Nina

    Epigenomics

    2023  Volume 15, Issue 13, Page(s) 705–716

    Abstract: COVID-19 is a viral respiratory infection induced by the newly discovered coronavirus SARS-CoV-2. miRNA is an example of a strong and direct regulator of a gene's transcriptional activity. The interaction between miRNAs and their target molecules is ... ...

    Abstract COVID-19 is a viral respiratory infection induced by the newly discovered coronavirus SARS-CoV-2. miRNA is an example of a strong and direct regulator of a gene's transcriptional activity. The interaction between miRNAs and their target molecules is responsible for homeostasis. Virus-derived and host-derived miRNAs are involved in the activity of hiding from immune system cells, inducing the inflammatory reaction through interplay with associated genes, during SARS-COV-2 infection. Interest in miRNAs has raised the comprehension of the machinery and pathophysiology of SARS-COV-2 infection. In this review, the effects and biological roles of miRNAs on SARS-CoV-2 pathogenicity and life cycle are described. The therapeutic potential of miRNAs against SARS-CoV-2 infection are also mentioned.
    MeSH term(s) Humans ; MicroRNAs/genetics ; COVID-19/genetics ; SARS-CoV-2/genetics ; Inflammation
    Chemical Substances MicroRNAs
    Language English
    Publishing date 2023-09-04
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2537199-X
    ISSN 1750-192X ; 1750-1911
    ISSN (online) 1750-192X
    ISSN 1750-1911
    DOI 10.2217/epi-2023-0179
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