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  1. Article ; Online: Temperature and fasting effect on compensatory growth and transcriptomic response in the Pacific white shrimp Penaeus vannamei

    Barajas-Sandoval, Diana / Escobedo-Fregoso, Cristina / Peña, A.

    Aquaculture. 2023 Sept., v. 574 p.739711-

    2023  

    Abstract: During the cultivation of the Pacific white shrimp, Penaeus vannamei, environmental modifications can generate stress and alter the expected growth of organisms. When stress is temporary and conditions for growth are restored, shrimp may exhibit an ... ...

    Abstract During the cultivation of the Pacific white shrimp, Penaeus vannamei, environmental modifications can generate stress and alter the expected growth of organisms. When stress is temporary and conditions for growth are restored, shrimp may exhibit an accelerated growth rate known as compensatory growth (CG), reaching partially or fully the weight of non-stressed organisms. However, the CG response capacity is limited, and a point of no return (PNR) occurs when stress is extreme. The aim of this study was to evaluate the effect of temperature changes and temporary fasting on the transcriptomic CG response of P. vannamei. Post-larvae (0.75 ± 0.05 g avg. wt.) were exposed to different stress periods with fasting for 3, 7, and 14 days at three temperatures each (22 °C, 26 °C, and 30 °C), followed by a recovery stage of feeding ad libitum and temperature at 30 °C for the remaining time of five experimental weeks. Treatments were compared with a control group fed to satiety at 30 °C throughout the experiment. Specific growth rate (SGR, % day⁻¹), weight gain (WG), survival (S), feed intake (FI), and feed conversion ratio (FCR) were determined weekly, and muscle was sampled for differential gene expression (DGE) analysis. Organisms exposed to 3 days of fasting reached the same weight as the control group, which indicated a complete CG. Within this group, those submitted to 26 °C showed lower FI and FCR than shrimps exposed at 22 °C and 30 °C (8% less feed consumption), suggesting a more efficient use of nutrients from the diet. On the other hand, the organisms exposed 14 days to fasting reached a PNR, and the WG reduction was >50%. The DGE concerning the control group showed 862 genes during CG and 449 genes in shrimps that reached the PNR. Up-regulation of genes related to energy homeostasis, muscle growth, and molting was observed during CG, whereas those involved in the cellular response to DNA damage stimulus were down-regulated. In contrast, genes related to oxidative stress response were up-regulated, and genes involved in molting and metabolic processes were down-regulated in organisms that reached a point of no return. Short-term fasting is an effective strategy to optimize feed use in shrimp farming without decreasing the final biomass.
    Keywords DNA damage ; Litopenaeus vannamei ; aquaculture ; biomass ; compensatory growth ; diet ; energy ; fasting ; feed conversion ; feed intake ; gene expression regulation ; homeostasis ; muscles ; oxidative stress ; postlarvae ; satiety ; shrimp ; specific growth rate ; stress response ; temperature ; transcriptomics ; weight gain ; Penaeus vannamei ; Gene expression ; Temperature changes ; Temporal fasting
    Language English
    Dates of publication 2023-09
    Publishing place Elsevier B.V.
    Document type Article ; Online
    ZDB-ID 185380-6
    ISSN 0044-8486 ; 0044-8516
    ISSN 0044-8486 ; 0044-8516
    DOI 10.1016/j.aquaculture.2023.739711
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  2. Article ; Online: Effect of temporal thermal stress on Penaeus vannamei: Growth performance and physiological plasticity.

    Barajas-Sandoval, Diana R / Escobedo-Fregoso, Cristina / Quiroz-Guzmán, Eduardo / Tovar-Ramírez, Dariel / Py, Clara Adèle / Peña-Rodríguez, Alberto

    Comparative biochemistry and physiology. Part A, Molecular & integrative physiology

    2024  Volume 295, Page(s) 111653

    Abstract: The present study evaluated the effect of temporal periods of hypothermia and hyperthermia, followed by an optimal temperature recovery phase on the growth, survival, and physiological response of Penaeus vannamei. Post-larvae were exposed to stress ... ...

    Abstract The present study evaluated the effect of temporal periods of hypothermia and hyperthermia, followed by an optimal temperature recovery phase on the growth, survival, and physiological response of Penaeus vannamei. Post-larvae were exposed to stress periods for 7 and 14 days at 22 °C and 32 °C each, followed by a recovery phase at 28 °C to complete seven experimental weeks, and were compared with a control group maintained at 28 °C. Weight gain, specific growth rate, feed intake, feed conversion ratio, and survival were weekly determined. Muscle, hepatopancreas, and hemolymph were sampled on the 14th day of the recovery phase for biochemical composition, and antioxidant and digestive enzyme activities determination. The shrimp presented a higher growth rate during short-term hyperthermia in contrast to shrimp under hypothermia that presented compensatory growth after thermal stress when the temperature was restored at 28 °C. Hyperthermia increased 12-13% the feed intake while this was diminished 21-29% by the hypothermia periods. Shrimp undergo metabolic adjustments following thermal stress, with short hypothermia increasing the lipase activity and lipid storage in the hepatopancreas, while short hyperthermia also enhances chymotrypsin activity and leads to higher protein and lipid accumulation. Conversely, prolonged hyperthermia induces greater energy consumption, depleting lipid and glycogen stores, while hypothermia causes scarce mobilization of energy reserves during recovery phase. Antioxidant enzyme activities were not affected by short-thermal stress (7d), while prolonged thermal stress (14d) significantly affected SOD, CAT, and GPx activities. The present study provides important insights into the physiological plasticity of P. vannamei during recovery from thermal stress.
    Language English
    Publishing date 2024-05-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 121246-1
    ISSN 1531-4332 ; 0300-9629 ; 1095-6433
    ISSN (online) 1531-4332
    ISSN 0300-9629 ; 1095-6433
    DOI 10.1016/j.cbpa.2024.111653
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  3. Article ; Online: Transcriptome profile in heat resilient Pacific oyster Crassostrea gigas families under thermal challenge

    Arredondo-Espinoza, Roberto / Ibarra, Ana M. / Roberts, Steven / Sicard-González, Maria Teresa / Escobedo-Fregoso, Cristina

    Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 2023 May 26, p.101089-

    2023  , Page(s) 101089–

    Abstract: Since the introduction of the Pacific oyster Crassostrea gigas in Baja California Sur, Mexico, its culture has faced environmental challenges, specifically increasing temperatures that result in high mortalities. The inter-tidal zone seawater temperature ...

    Abstract Since the introduction of the Pacific oyster Crassostrea gigas in Baja California Sur, Mexico, its culture has faced environmental challenges, specifically increasing temperatures that result in high mortalities. The inter-tidal zone seawater temperature during a year at the Baja California Peninsula broadly ranges from 7 °C to 39 °C. Therefore, to understand how oysters respond to heat stress during daily temperature oscillations, heat-resistant (RR, father, and mother resistant) and heat-susceptible (SS, both parents susceptible) phenotypes families from a C. gigas breeding program were exposed to a thermal challenge. Based on a laboratory-simulated daily oscillatory thermal challenge (26 to 34 °C) for 30 days, RR phenotype presented differences compared to SS phenotype since the beginning (day 0) of the thermal challenge. Gene expression analyses revealed 1822 differentially expressed up-regulated transcripts in RR, related to functions of metabolic processes, biological regulation, and response to stimulus and signaling. At the end of the experiment (day 30), 2660 differentially expressed up-regulated transcripts were identified in RR. Functional analysis of the genes expressed indicates responses of regulation of biological processes and response to a stimulus. Additionally, 340 genes were differentially expressed among RR vs. SS from the beginning to the end of the thermal challenge, where 170 genes were up-regulated, and 170 were down-regulated. These transcriptomic profiles represent the first report to identify gene expression markers associated with RR phenotypes for the Pacific oyster to the future broodstock selection.
    Keywords Crassostrea gigas ; biochemistry ; breeding stock ; gene expression ; genomics ; heat ; heat stress ; phenotype ; proteomics ; seawater ; temperature ; transcriptome ; transcriptomics ; Mexico ; Transcriptomic ; Oscillatory-heat-challenge ; Heat-resistant-phenotype ; Heat-susceptible-phenotype ; Gene markers
    Language English
    Dates of publication 2023-0526
    Publishing place Elsevier Inc.
    Document type Article ; Online
    Note Pre-press version
    ZDB-ID 2212119-5
    ISSN 1878-0407 ; 1744-117X
    ISSN (online) 1878-0407
    ISSN 1744-117X
    DOI 10.1016/j.cbd.2023.101089
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Transcriptome profile in heat resilient Pacific oyster Crassostrea gigas families under thermal challenge.

    Arredondo-Espinoza, Roberto / Ibarra, Ana M / Roberts, Steven B / Sicard-González, Maria Teresa / Escobedo-Fregoso, Cristina

    Comparative biochemistry and physiology. Part D, Genomics & proteomics

    2023  Volume 47, Page(s) 101089

    Abstract: Since the introduction of the Pacific oyster Crassostrea gigas in Baja California Sur, Mexico, its culture has faced environmental challenges, specifically increasing temperatures that result in high mortalities. The inter-tidal zone seawater temperature ...

    Abstract Since the introduction of the Pacific oyster Crassostrea gigas in Baja California Sur, Mexico, its culture has faced environmental challenges, specifically increasing temperatures that result in high mortalities. The inter-tidal zone seawater temperature during a year at the Baja California Peninsula broadly ranges from 7 °C to 39 °C. Therefore, to understand how oysters respond to heat stress during daily temperature oscillations, heat-resistant (RR, father, and mother resistant) and heat-susceptible (SS, both parents susceptible) phenotypes families from a C. gigas breeding program were exposed to a thermal challenge. Based on a laboratory-simulated daily oscillatory thermal challenge (26 to 34 °C) for 30 days, RR phenotype presented differences compared to SS phenotype since the beginning (day 0) of the thermal challenge. Gene expression analyses revealed 1822 differentially expressed up-regulated transcripts in RR, related to functions of metabolic processes, biological regulation, and response to stimulus and signaling. At the end of the experiment (day 30), 2660 differentially expressed up-regulated transcripts were identified in RR. Functional analysis of the genes expressed indicates responses of regulation of biological processes and response to a stimulus. Additionally, 340 genes were differentially expressed among RR vs. SS from the beginning to the end of the thermal challenge, where 170 genes were up-regulated, and 170 were down-regulated. These transcriptomic profiles represent the first report to identify gene expression markers associated with RR phenotypes for the Pacific oyster to the future broodstock selection.
    MeSH term(s) Animals ; Transcriptome ; Crassostrea/metabolism ; Mexico ; Gene Expression Profiling ; Heat-Shock Response/genetics
    Language English
    Publishing date 2023-05-26
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2212119-5
    ISSN 1878-0407 ; 1744-117X
    ISSN (online) 1878-0407
    ISSN 1744-117X
    DOI 10.1016/j.cbd.2023.101089
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Development of SNP markers for identification of thermo-resistant families of the Pacific oyster Crassostrea gigas based on RNA-seq

    Juárez, Oscar E / Escobedo-Fregoso, Cristina / Arredondo-Espinoza, Roberto / Ibarra, Ana M

    Aquaculture. 2021 June 30, v. 539

    2021  

    Abstract: The Pacific oyster Crassostrea gigas is the most cultivated oyster species around the world. However, massive mortalities linked to high temperatures have been reported in different countries, becoming one of the most significant challenges for oyster ... ...

    Abstract The Pacific oyster Crassostrea gigas is the most cultivated oyster species around the world. However, massive mortalities linked to high temperatures have been reported in different countries, becoming one of the most significant challenges for oyster culture. High mortality episodes have been reported also in Mexico due to temperature stress, mainly in Sonora and Baja California Sur. In this region, areas with shallow waters can reach 34 °C, causing severe physiological stress, mostly in juvenile oysters. Recently and as a strategy to address this problem in Mexico, a selective breeding program has been implemented, aiming to develop families with high survival at high temperatures through marker-aided selection. The objective of the present study was the identification of SNP markers from the transcriptome of families phenotypically different: thermo-resistant (‘R’) versus thermo-susceptible (‘S’) and analyzing whether these variants were present in transcripts potentially involved in thermal resistance. Several SNP variants were detected between ‘R’ and ‘S’ families, affecting multiple transcripts and molecular pathways. Four SNP markers provided accurate differentiation between ‘R’ and ‘S’ oysters. Additionally, 66 SNPs were suitable for pedigree reconstruction and sibling clustering. The discriminant SNPs were associated with changes in gene transcripts that were related to biological processes such as the activation of HSP90, zinc uptake, collagen biosynthesis, ion transport, and the immune response. The use of SNPs markers associated with thermo-resistant families can help to improve the yields in oyster production at high temperatures, especially in Mexico.
    Keywords Crassostrea gigas ; biosynthesis ; collagen ; genes ; heat tolerance ; immune response ; juveniles ; marker-assisted selection ; mortality ; oyster culture ; oysters ; pedigree ; sequence analysis ; temperature ; transcriptome ; zinc ; Mexico
    Language English
    Dates of publication 2021-0630
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 185380-6
    ISSN 0044-8486 ; 0044-8516
    ISSN 0044-8486 ; 0044-8516
    DOI 10.1016/j.aquaculture.2021.736618
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  6. Article: Bacterial communities and digestive enzymatic activities of Litopenaeus vannamei shrimp fed pre-digested seaweeds as a functional ingredient

    Omont, Alexia / Elizondo-González, Regina / Escobedo-Fregoso, Cristina / Tovar-Ramírez, Dariel / Hinojosa-Baltazar, Patricia / Peña-Rodríguez, Alberto

    Journal of applied phycology. 2021 Apr., v. 33, no. 2

    2021  

    Abstract: This study evaluated the use of pre-digested (PD) seaweeds Ulva lactuca and Eisenia sp. as functional ingredients in feed through their effect on growth, digestive enzymatic activity, and intestine bacterial biota of the white shrimp Litopenaeus vannamei. ...

    Abstract This study evaluated the use of pre-digested (PD) seaweeds Ulva lactuca and Eisenia sp. as functional ingredients in feed through their effect on growth, digestive enzymatic activity, and intestine bacterial biota of the white shrimp Litopenaeus vannamei. Dried U. lactuca and Eisenia sp. were processed by enzymatic digestion and anaerobic fermentation and included in shrimp feed at 10 and 20%, partially substituting fish meal and wheat, and tested during a 30-day feeding trial in L. vannamei (initial weight: 0.18 ± 0.01 g). Shrimp survival (93–100%) and growth parameters (final weight: 1.25–1.30 g, feed conversion rate 1.18–1.29) were similar among treatments. PD Eisenia sp. resulted in an efficient replacement of up to 33% of fish meal. Experimental PD diets led to higher enzymatic activity for trypsin and amylase in shrimp hepatopancreas, and PD U. lactuca resulted in higher lipase activity (p < 0.05). Finally, in shrimp intestine, the PD-seaweed supplemented diets resulted in a reduction of the relative abundance of Rhodobacterales, Vibrionales, Alteromonadales, and Pseudomonadales, and increased Bacillales, Actinomycetales, and Acidimicrobiales compared to the control diet. Particularly, 20% PD U. lactuca increased Flavobacteriales and Verrucomicrobiales and reduced the abundance of potential pathogenic bacterial genera Lucibacterium, Allomonas, Tenacibaculum, and Lutimonas. These results show the potential of PD Eisenia sp. and PD U. lactuca as effective functional ingredients, with an up to 20% inclusion in shrimp feed, high potential as partial substitute for fish meal and enhancer of digestive enzymatic activity with favourable modifications on gut microbiota in the white shrimp L. vannamei.
    Keywords Acidimicrobiales ; Actinomycetales ; Alteromonadales ; Bacillales ; Litopenaeus vannamei ; Pseudomonadales ; Rhodobacterales ; Tenacibaculum ; Ulva lactuca ; Verrucomicrobiales ; Vibrionales ; algology ; amylases ; bacteria ; carboxylic ester hydrolases ; diet ; enzyme activity ; feed conversion ; fermentation ; fish meal ; hepatopancreas ; ingredients ; intestinal microorganisms ; intestines ; shrimp ; trypsin ; wheat
    Language English
    Dates of publication 2021-04
    Size p. 1239-1251.
    Publishing place Springer Netherlands
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1002324-0
    ISSN 1573-5176 ; 0921-8971
    ISSN (online) 1573-5176
    ISSN 0921-8971
    DOI 10.1007/s10811-021-02381-8
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  7. Article: Transcriptome-based metabolic profiling of flavonoids in Agave lechuguilla waste biomass

    Morreeuw, Zoé P / Escobedo-Fregoso, Cristina / Ríos-González, Leopoldo J / Castillo-Quiroz, David / Reyes, Ana G

    Plant science. 2021 Apr., v. 305

    2021  

    Abstract: Agave lechuguilla is one of the most abundant species in arid and semiarid regions of Mexico, and is used to extract fiber. However, 85 % of the harvested plant material is discarded. Previous bioprospecting studies of the waste biomass suggest the ... ...

    Abstract Agave lechuguilla is one of the most abundant species in arid and semiarid regions of Mexico, and is used to extract fiber. However, 85 % of the harvested plant material is discarded. Previous bioprospecting studies of the waste biomass suggest the presence of bioactive compounds, although the extraction process limited metabolite characterization. This work achieved flavonoid profiling of A. lechuguilla in both processed and non-processed leaf tissues using transcriptomic analysis. Functional annotation of the first de novo transcriptome of A. lechuguilla (255.7 Mbp) allowed identifying genes coding for 33 enzymes and 8 transcription factors involved in flavonoid biosynthesis. The flavonoid metabolic pathway was mostly elucidated by HPLC-MS/MS screening of alcoholic extracts. Key genes of flavonoid synthesis were higher expressed in processed leaf tissues than in non-processed leaves, suggesting a high content of flavonoids and glycoside derivatives in the waste biomass. Targeted HPLC-UV-MS analyses confirmed the concentration of isorhamnetin (1251.96 μg), flavanone (291.51 μg), hesperidin (34.23 μg), delphinidin (24.23 μg), quercetin (15.57 μg), kaempferol (13.71 μg), cyanidin (12.32 μg), apigenin (9.70 μg) and catechin (7.91 μg) per gram of dry residue. Transcriptomic and biochemical profiling concur in the potential of lechuguilla by-products with a wide range of applications in agriculture, feed, food, cosmetics, and pharmaceutical industries.
    Keywords Agave lechuguilla ; apigenin ; biochemical pathways ; biomass ; biosynthesis ; catechin ; cosmetics ; cyanidin ; delphinidin ; flavanones ; hesperidin ; isorhamnetin ; kaempferol ; leaves ; metabolites ; quercetin ; transcriptome ; transcriptomics ; Mexico
    Language English
    Dates of publication 2021-04
    Publishing place Elsevier B.V.
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2020.110748
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  8. Article: Transcriptome analysis reveals differential gene expression associated with white spot syndrome virus resistance in the shrimp Litopenaeus vannamei fed on functional diets

    Cabrera-Stevens, Monica Janeth / Sánchez-Paz, Arturo / Mendoza-Cano, Fernando / Escobedo-Fregoso, Cristina / Encinas-García, Trinidad / Elizondo-González, Regina / Peña-Rodríguez, Alberto

    Aquaculture. 2022 Jan. 30, v. 547

    2022  

    Abstract: The White Spot Syndrome Virus (WSSV) is one of the most lethal pathogens in the shrimp aquaculture industry. Therefore, several studies have focused on developing alternatives to reduce its negative effects. Different functional feeds have been probed to ...

    Abstract The White Spot Syndrome Virus (WSSV) is one of the most lethal pathogens in the shrimp aquaculture industry. Therefore, several studies have focused on developing alternatives to reduce its negative effects. Different functional feeds have been probed to enhance survival against WSSV infection by improving shrimp health condition. This study evaluated the effect of functional feeds on differential gene expression and their association with WSSV resistance in shrimp Litopenaeus vannamei. A total of seven diets were used to fed shrimp during 28 days of trial: a reference feed (Ref), five functional feeds including a synbiotic (Syn), seaweeds extract (Alg), vitamin C (VitC), β-glucan (Bglu), turmeric and maca meal (TuMa), and a feed with deficiency of highly unsaturated fatty acids (L-Hufa). At the end of the feeding period, shrimp were sampled for transcriptomic analysis, and a WSSV challenge was performed to evaluate virus replication and survival of shrimp. After 96 h post-infection (hpi), the higher survival rates were observed in shrimp fed with TuMa and Alg diets (WSSV-resistant), 46% and 35% respectively, meanwhile shrimp fed Ref, Vit C, and Bglu diets (WSSV-susceptible) showed 100% mortality at 84 hpi. According to WSSV replication kinetics, at 72 hpi, viral copies highly increased for Ref and Syn treatments (> 8 × 10⁷ copies/ng DNA), and specimens fed L-Hufa resulted in the lowest number of viral copies among treatments (2.6 × 10⁶ copies/ng DNA). Up-regulated genes in the WSSV-resistant shrimp group were mostly related to translation (ribosomal proteins), energetic production (glyceraldehyde-3-phosphate dehydrogenase, hydroxyacyl-coenzyme A dehydrogenase, malate dehydrogenase, NADH dehydrogenase, and ATP synthase subunit b), antioxidant activity (glutathione peroxidase and glutathione S-transferase), and immune response (toll receptor, ubiquitin-conjugating enzyme E2, C-type lectin, ctenidin-1 and acanthoscurrin-2). The transcriptomic response of shrimp fed with TuMa and Alg feeds shown DEGs potentially related to WSSV resistance.
    Keywords DNA ; H-transporting ATP synthase ; Lepidium meyenii ; Litopenaeus vannamei ; NADH dehydrogenase ; White spot syndrome virus ; antioxidant activity ; aquaculture industry ; ascorbic acid ; gene expression regulation ; glutathione peroxidase ; glutathione transferase ; glyceraldehyde-3-phosphate dehydrogenase ; immune response ; lectins ; malate dehydrogenase ; mortality ; shrimp ; shrimp culture ; transcriptomics ; turmeric ; ubiquitin-protein ligase ; virus replication
    Language English
    Dates of publication 2022-0130
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 185380-6
    ISSN 0044-8486 ; 0044-8516
    ISSN 0044-8486 ; 0044-8516
    DOI 10.1016/j.aquaculture.2021.737434
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  9. Article: Triploid-induced complete sterility in the scallop Nodipecten subnodosus might be triggered by an early and sustained DNA damage response

    Galindo-Torres, Pavel / Abreu-Goodger, Cei / Llera-Herrera, Raul / Escobedo-Fregoso, Cristina / García-Gasca, Alejandra / Ibarra, Ana M.

    Aquaculture. 2022 Oct. 15, v. 559

    2022  

    Abstract: Triploid Nodipecten subnodosus scallops, unlike other mollusks, are completely sterile. In this study we focused on understanding the underlying molecular changes of triploid sterility using a transcriptomic approach. Total RNA from the gonad of diploid ... ...

    Abstract Triploid Nodipecten subnodosus scallops, unlike other mollusks, are completely sterile. In this study we focused on understanding the underlying molecular changes of triploid sterility using a transcriptomic approach. Total RNA from the gonad of diploid scallops in inactive and initial gametogenic stages and triploid scallops of the same cohort and ages were sequenced employing Illumina RNA-Seq. From 68,244 assembled and annotated transcripts, 1120 had terms associated with meiosis checkpoint or arrest, DNA damage response, or recombination. Differential gene expression analyses were conducted by contrasting initial vs. inactive stages of gametogenesis in each ploidy. In diploids, genes participating in homologous recombination during meiosis (msh5 and kdm8), spindle organization (nup62), centrosome formation (cenp-T), and sex differentiation (Ns-dmta2 and pum3), were up-regulated during initial gametogenesis. In triploids, a different set of genes were up-regulated during initial gametogenesis, and included genes involved in the DNA damage response and double strand break repair (rad51-C, xpc, myoVI), in the transition of metaphase/anaphase of mitosis (slp1 and nuf2), as well as genes that trigger both the intrinsic and extrinsic (caspase-3, icad, bmcc1) and extrinsic apoptosis pathways only (tnfr1, dab2ip). The results suggest significant DNA damage in triploids initial gametogenesis, possibly as a consequence of failing to repair double-strand breaks during DNA replication. This coincides with previous observations in which few triploid scallops showed gametic stages more advanced than oogonia or spermatogonia, and when present they were few.
    Keywords DNA damage ; DNA repair ; DNA replication ; Nodipecten subnodosus ; anaphase ; apoptosis ; aquaculture ; caspase-3 ; centrosomes ; diploidy ; gametogenesis ; gene expression regulation ; homologous recombination ; meiosis ; metaphase ; mitosis ; oogonia ; scallops ; sequence analysis ; sexual development ; spermatogonia ; transcriptomics ; triploidy
    Language English
    Dates of publication 2022-1015
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 185380-6
    ISSN 0044-8486 ; 0044-8516
    ISSN 0044-8486 ; 0044-8516
    DOI 10.1016/j.aquaculture.2022.738422
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Transcriptome-based metabolic profiling of flavonoids in Agave lechuguilla waste biomass.

    Morreeuw, Zoé P / Escobedo-Fregoso, Cristina / Ríos-González, Leopoldo J / Castillo-Quiroz, David / Reyes, Ana G

    Plant science : an international journal of experimental plant biology

    2021  Volume 305, Page(s) 110748

    Abstract: Agave lechuguilla is one of the most abundant species in arid and semiarid regions of Mexico, and is used to extract fiber. However, 85 % of the harvested plant material is discarded. Previous bioprospecting studies of the waste biomass suggest the ... ...

    Abstract Agave lechuguilla is one of the most abundant species in arid and semiarid regions of Mexico, and is used to extract fiber. However, 85 % of the harvested plant material is discarded. Previous bioprospecting studies of the waste biomass suggest the presence of bioactive compounds, although the extraction process limited metabolite characterization. This work achieved flavonoid profiling of A. lechuguilla in both processed and non-processed leaf tissues using transcriptomic analysis. Functional annotation of the first de novo transcriptome of A. lechuguilla (255.7 Mbp) allowed identifying genes coding for 33 enzymes and 8 transcription factors involved in flavonoid biosynthesis. The flavonoid metabolic pathway was mostly elucidated by HPLC-MS/MS screening of alcoholic extracts. Key genes of flavonoid synthesis were higher expressed in processed leaf tissues than in non-processed leaves, suggesting a high content of flavonoids and glycoside derivatives in the waste biomass. Targeted HPLC-UV-MS analyses confirmed the concentration of isorhamnetin (1251.96 μg), flavanone (291.51 μg), hesperidin (34.23 μg), delphinidin (24.23 μg), quercetin (15.57 μg), kaempferol (13.71 μg), cyanidin (12.32 μg), apigenin (9.70 μg) and catechin (7.91 μg) per gram of dry residue. Transcriptomic and biochemical profiling concur in the potential of lechuguilla by-products with a wide range of applications in agriculture, feed, food, cosmetics, and pharmaceutical industries.
    MeSH term(s) Agave/chemistry ; Agave/genetics ; Agave/metabolism ; Biomass ; Flavonoids/metabolism ; Gene Expression Profiling ; Mexico ; Plant Extracts/chemistry ; Waste Products/analysis
    Chemical Substances Flavonoids ; Plant Extracts ; Waste Products
    Language English
    Publishing date 2021-01-28
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2020.110748
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