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  1. Article ; Online: A new physiological medium uncovers biochemical and cellular alterations in Lesch-Nyhan disease fibroblasts.

    Escudero-Ferruz, Paula / Ontiveros, Neus / Cano-Estrada, Claudia / Sutcliffe, Diane J / Jinnah, H A / Torres, Rosa J / López, José M

    Molecular medicine (Cambridge, Mass.)

    2024  Volume 30, Issue 1, Page(s) 3

    Abstract: Background: Lesch-Nyhan disease (LND) is a severe neurological disorder caused by the genetic deficiency of hypoxanthine-guanine phosphoribosyltransferase (HGprt), an enzyme involved in the salvage synthesis of purines. To compensate this deficiency, ... ...

    Abstract Background: Lesch-Nyhan disease (LND) is a severe neurological disorder caused by the genetic deficiency of hypoxanthine-guanine phosphoribosyltransferase (HGprt), an enzyme involved in the salvage synthesis of purines. To compensate this deficiency, there is an acceleration of the de novo purine biosynthetic pathway. Most studies have failed to find any consistent abnormalities of purine nucleotides in cultured cells obtained from the patients. Recently, it has been shown that 5-aminoimidazole-4-carboxamide riboside 5'-monophosphate (ZMP), an intermediate of the de novo pathway, accumulates in LND fibroblasts maintained with RPMI containing physiological levels (25 nM) of folic acid (FA), which strongly differs from FA levels of regular cell culture media (2200 nM). However, RPMI and other standard media contain non-physiological levels of many nutrients, having a great impact in cell metabolism that does not precisely recapitulate the in vivo behavior of cells.
    Methods: We prepared a new culture medium containing physiological levels of all nutrients, including vitamins (Plasmax-PV), to study the potential alterations of LND fibroblasts that may have been masked by the usage of non-physiological media. We quantified ZMP accumulation under different culture conditions and evaluated the activity of two known ZMP-target proteins (AMPK and ADSL), the mRNA expression of the folate carrier SLC19A1, possible mitochondrial alterations and functional consequences in LND fibroblasts.
    Results: LND fibroblasts maintained with Plasmax-PV show metabolic adaptations such a higher glycolytic capacity, increased expression of the folate carrier SCL19A1, and functional alterations such a decreased mitochondrial potential and reduced cell migration compared to controls. These alterations can be reverted with high levels of folic acid, suggesting that folic acid supplements might be a potential treatment for LND.
    Conclusions: A complete physiological cell culture medium reveals new alterations in Lesch-Nyhan disease. This work emphasizes the importance of using physiological cell culture conditions when studying a metabolic disorder.
    MeSH term(s) Humans ; Lesch-Nyhan Syndrome/genetics ; Lesch-Nyhan Syndrome/metabolism ; Hypoxanthine Phosphoribosyltransferase/genetics ; Hypoxanthine Phosphoribosyltransferase/metabolism ; Cells, Cultured ; Fibroblasts/metabolism ; Folic Acid
    Chemical Substances Hypoxanthine Phosphoribosyltransferase (EC 2.4.2.8) ; Folic Acid (935E97BOY8)
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 1283676-x
    ISSN 1528-3658 ; 1076-1551
    ISSN (online) 1528-3658
    ISSN 1076-1551
    DOI 10.1186/s10020-023-00774-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Purine Nucleotide Alterations in Tumoral Cell Lines Maintained with Physiological Levels of Folic Acid.

    Cano-Estrada, Claudia / de Benito-Gómez, Lidia / Escudero-Ferruz, Paula / Ontiveros, Neus / Iglesias-Serret, Daniel / López, José M

    International journal of molecular sciences

    2023  Volume 24, Issue 16

    Abstract: Most cancer cells have an increased synthesis of purine nucleotides to fulfil their enhanced division rate. The de novo synthesis of purines requires folic acid in the form of ... ...

    Abstract Most cancer cells have an increased synthesis of purine nucleotides to fulfil their enhanced division rate. The de novo synthesis of purines requires folic acid in the form of N
    MeSH term(s) Humans ; Folic Acid ; HEK293 Cells ; Purine Nucleotides ; Cell Line, Tumor ; HeLa Cells
    Chemical Substances Folic Acid (935E97BOY8) ; Purine Nucleotides
    Language English
    Publishing date 2023-08-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms241612573
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: The zinc-finger proteins WOC and ROW play distinct functions within the HP1c transcription complex.

    Di Mauro, Gianmarco / Carbonell, Albert / Escudero-Ferruz, Paula / Azorín, Fernando

    Biochimica et biophysica acta. Gene regulatory mechanisms

    2020  Volume 1863, Issue 3, Page(s) 194492

    Abstract: In Drosophila, the Heterochromatin Protein 1c (HP1c) forms a transcriptional complex with the zinc-finger proteins WOC and ROW, and the extraproteasomal ubiquitin receptor Dsk2. This complex localizes at promoters of active genes and it is required for ... ...

    Abstract In Drosophila, the Heterochromatin Protein 1c (HP1c) forms a transcriptional complex with the zinc-finger proteins WOC and ROW, and the extraproteasomal ubiquitin receptor Dsk2. This complex localizes at promoters of active genes and it is required for transcription. The functions played by the different components of the HP1c complex are not fully understood. In this study we show that WOC and ROW are required for chromatin binding of both Dsk2 and HP1c. However, while impairing chromatin binding strongly destabilizes HP1c, it does not affect Dsk2 stability. We also show that WOC, but not ROW, is required for nuclear localization of Dsk2. Moreover, WOC and Dsk2 co-immunoprecitate upon ROW depletion. These results suggest that WOC and Dsk2 interact to form a subcomplex that mediates nuclear translocation of Dsk2. We also show that ROW mediates chromatin binding of the WOC/Dsk2 subcomplex, as well as of HP1c. Altogether these observations favor a model by which the interaction with WOC recruits Dsk2 to the HP1c complex that, in its turn, binds chromatin in a ROW-dependent manner.
    MeSH term(s) Animals ; Carrier Proteins/metabolism ; Cell Cycle Proteins/metabolism ; Cell Line ; Cell Nucleus/metabolism ; Chromatin/metabolism ; Chromosomal Proteins, Non-Histone/metabolism ; DNA-Binding Proteins/metabolism ; DNA-Binding Proteins/physiology ; Drosophila/genetics ; Drosophila/metabolism ; Drosophila Proteins/metabolism ; Drosophila Proteins/physiology ; Transcription Factors/metabolism ; Transcription Factors/physiology ; Transcription, Genetic
    Chemical Substances Carrier Proteins ; Cell Cycle Proteins ; Chromatin ; Chromosomal Proteins, Non-Histone ; DNA-Binding Proteins ; Drosophila Proteins ; HP1c protein, Drosophila ; ROW protein, Drosophila ; Transcription Factors ; Ubqn protein, Drosophila ; WOC protein, Drosophila
    Language English
    Publishing date 2020-01-30
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2918786-2
    ISSN 1876-4320 ; 1874-9399
    ISSN (online) 1876-4320
    ISSN 1874-9399
    DOI 10.1016/j.bbagrm.2020.194492
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Fluorescently-labelled CPD and 6-4PP photolyases: new tools for live-cell DNA damage quantification and laser-assisted repair.

    Steurer, Barbara / Turkyilmaz, Yasemin / van Toorn, Marvin / van Leeuwen, Wessel / Escudero-Ferruz, Paula / Marteijn, Jurgen A

    Nucleic acids research

    2019  Volume 47, Issue 7, Page(s) 3536–3549

    Abstract: UV light induces cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone (6-4) photoproducts (6-4PPs), which can result in carcinogenesis and aging, if not properly repaired by nucleotide excision repair (NER). Assays to determine DNA damage load ... ...

    Abstract UV light induces cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone (6-4) photoproducts (6-4PPs), which can result in carcinogenesis and aging, if not properly repaired by nucleotide excision repair (NER). Assays to determine DNA damage load and repair rates are invaluable tools for fundamental and clinical NER research. However, most current assays to quantify DNA damage and repair cannot be performed in real time. To overcome this limitation, we made use of the damage recognition characteristics of CPD and 6-4PP photolyases (PLs). Fluorescently-tagged PLs efficiently recognize UV-induced DNA damage without blocking NER activity, and therefore can be used as sensitive live-cell damage sensors. Importantly, FRAP-based assays showed that PLs bind to damaged DNA in a highly sensitive and dose-dependent manner, and can be used to quantify DNA damage load and to determine repair kinetics in real time. Additionally, PLs can instantly reverse DNA damage by 405 nm laser-assisted photo-reactivation during live-cell imaging, opening new possibilities to study lesion-specific NER dynamics and cellular responses to damage removal. Our results show that fluorescently-tagged PLs can be used as a versatile tool to sense, quantify and repair DNA damage, and to study NER kinetics and UV-induced DNA damage response in living cells.
    MeSH term(s) Carcinogenesis/genetics ; Carcinogenesis/radiation effects ; DNA/genetics ; DNA/radiation effects ; DNA Damage/genetics ; DNA Damage/radiation effects ; DNA Repair/genetics ; DNA Repair/radiation effects ; Deoxyribodipyrimidine Photo-Lyase/genetics ; Deoxyribodipyrimidine Photo-Lyase/radiation effects ; Humans ; Pyrimidine Dimers/genetics ; Pyrimidine Dimers/radiation effects ; Ultraviolet Rays/adverse effects
    Chemical Substances Pyrimidine Dimers ; pyrimidine-pyrimidone dimer ; DNA (9007-49-2) ; Deoxyribodipyrimidine Photo-Lyase (EC 4.1.99.3)
    Language English
    Publishing date 2019-02-01
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 186809-3
    ISSN 1362-4962 ; 1362-4954 ; 0301-5610 ; 0305-1048
    ISSN (online) 1362-4962 ; 1362-4954
    ISSN 0301-5610 ; 0305-1048
    DOI 10.1093/nar/gkz035
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: A fraction of barrier-to-autointegration factor (BAF) associates with centromeres and controls mitosis progression.

    Torras-Llort, Mònica / Medina-Giró, Sònia / Escudero-Ferruz, Paula / Lipinszki, Zoltan / Moreno-Moreno, Olga / Karman, Zoltan / Przewloka, Marcin R / Azorín, Fernando

    Communications biology

    2020  Volume 3, Issue 1, Page(s) 454

    Abstract: Barrier-to-Autointegration Factor (BAF) is a conserved nuclear envelope (NE) component that binds chromatin and helps its anchoring to the NE. Cycles of phosphorylation and dephosphorylation control BAF function. Entering mitosis, phosphorylation ... ...

    Abstract Barrier-to-Autointegration Factor (BAF) is a conserved nuclear envelope (NE) component that binds chromatin and helps its anchoring to the NE. Cycles of phosphorylation and dephosphorylation control BAF function. Entering mitosis, phosphorylation releases BAF from chromatin and facilitates NE-disassembly. At mitotic exit, PP2A-mediated dephosphorylation restores chromatin binding and nucleates NE-reassembly. Here, we show that in Drosophila a small fraction of BAF (cenBAF) associates with centromeres. We also find that PP4 phosphatase, which is recruited to centromeres by CENP-C, prevents phosphorylation and release of cenBAF during mitosis. cenBAF is necessary for proper centromere assembly and accurate chromosome segregation, being critical for mitosis progression. Disrupting cenBAF localization prevents PP2A inactivation in mitosis compromising global BAF phosphorylation, which in turn leads to its persistent association with chromatin, delays anaphase onset and causes NE defects. These results suggest that, together with PP4 and CENP-C, cenBAF forms a centromere-based mechanism that controls chromosome segregation and mitosis progression.
    MeSH term(s) Animals ; Biomarkers ; Centromere/genetics ; Centromere/metabolism ; Chromatin/genetics ; Chromatin/metabolism ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Drosophila Proteins/genetics ; Drosophila Proteins/metabolism ; Fluorescent Antibody Technique ; Gene Expression Regulation ; Mitosis ; Models, Biological ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Phosphorylation ; Protein Binding ; Protein Transport
    Chemical Substances BAF protein, Drosophila ; Biomarkers ; Chromatin ; DNA-Binding Proteins ; Drosophila Proteins ; Nuclear Proteins
    Language English
    Publishing date 2020-08-19
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-020-01182-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Novel Candidate Genes and a Wide Spectrum of Structural and Point Mutations Responsible for Inherited Retinal Dystrophies Revealed by Exome Sequencing.

    de Castro-Miró, Marta / Tonda, Raul / Escudero-Ferruz, Paula / Andrés, Rosa / Mayor-Lorenzo, Andrés / Castro, Joaquín / Ciccioli, Marcela / Hidalgo, Daniel A / Rodríguez-Ezcurra, Juan José / Farrando, Jorge / Pérez-Santonja, Juan J / Cormand, Bru / Marfany, Gemma / Gonzàlez-Duarte, Roser

    PloS one

    2016  Volume 11, Issue 12, Page(s) e0168966

    Abstract: Background: NGS-based genetic diagnosis has completely revolutionized the human genetics field. In this study, we have aimed to identify new genes and mutations by Whole Exome Sequencing (WES) responsible for inherited retinal dystrophies (IRD).: ... ...

    Abstract Background: NGS-based genetic diagnosis has completely revolutionized the human genetics field. In this study, we have aimed to identify new genes and mutations by Whole Exome Sequencing (WES) responsible for inherited retinal dystrophies (IRD).
    Methods: A cohort of 33 pedigrees affected with a variety of retinal disorders was analysed by WES. Initial prioritization analysis included around 300 IRD-associated genes. In non-diagnosed families a search for pathogenic mutations in novel genes was undertaken.
    Results: Genetic diagnosis was attained in 18 families. Moreover, a plausible candidate is proposed for 10 more cases. Two thirds of the mutations were novel, including 4 chromosomal rearrangements, which expand the IRD allelic heterogeneity and highlight the contribution of private mutations. Our results prompted clinical re-evaluation of some patients resulting in assignment to a syndromic instead of non-syndromic IRD. Notably, WES unveiled four new candidates for non-syndromic IRD: SEMA6B, CEP78, CEP250, SCLT1, the two latter previously associated to syndromic disorders. We provide functional data supporting that missense mutations in CEP250 alter cilia formation.
    Conclusion: The diagnostic efficiency of WES, and strictly following the ACMG/AMP criteria is 55% in reported causative genes or functionally supported new candidates, plus 30% families in which likely pathogenic or VGUS/VUS variants were identified in plausible candidates. Our results highlight the clinical utility of WES for molecular diagnosis of IRD, provide a wider spectrum of mutations and concomitant genetic variants, and challenge our view on syndromic vs non-syndromic, and causative vs modifier genes.
    MeSH term(s) Animals ; Autoantigens/genetics ; Autoantigens/physiology ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/physiology ; Chromosome Aberrations ; Cohort Studies ; Exome ; Female ; Genotype ; Humans ; Male ; Mice ; Mice, Inbred C57BL ; Pedigree ; Point Mutation ; Retinal Dystrophies/genetics ; Semaphorins/genetics ; Semaphorins/physiology ; Sequence Analysis, DNA ; Sodium Channels/genetics ; Sodium Channels/physiology
    Chemical Substances Autoantigens ; CEP78 protein, human ; Cell Cycle Proteins ; CEP250 protein, human ; SCLT1 protein, human ; SEMA6B protein, human ; Semaphorins ; Sodium Channels
    Language English
    Publishing date 2016-12-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0168966
    Database MEDical Literature Analysis and Retrieval System OnLINE

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