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  1. Article ; Online: Validation of artificial intelligence contrast mammography in diagnosis of breast cancer: Relationship to histopathological results.

    Helal, Maha / Khaled, Rana / Alfarghaly, Omar / Mokhtar, Omnia / Elkorany, Abeer / Fahmy, Aly / El Kassas, Hebatalla

    European journal of radiology

    2024  Volume 173, Page(s) 111392

    Abstract: Introduction: Contrast-enhanced mammography (CEM) is used for characterization of breast lesions with increased diagnostic accuracy compared to digital mammography (DM). Artificial intelligence (AI) approaches are emerging with accuracies equal to an ... ...

    Abstract Introduction: Contrast-enhanced mammography (CEM) is used for characterization of breast lesions with increased diagnostic accuracy compared to digital mammography (DM). Artificial intelligence (AI) approaches are emerging with accuracies equal to an average radiologist. However, most studies trained deep learning (DL) models on DM images and there is a paucity in literature for discovering the application of AI using CEM.
    Objectives: To develop and test a DL model that classifies CEM images and produces corresponding highlights of lesions detected.
    Methods: Fully annotated 2006 images of 326 females available from the previously published Categorized Digital Database for Contrast Enhanced Mammography images (CDD-CESM) were used for training. We developed a DL multiview contrast mammography model (MVCM) for classification of CEM low energy and recombined images. An external test set of 288 images of 37 females not included in the training was used for validation. Correlation with histopathological results and follow-up was considered the standard reference. The study protocol was approved by the Institutional Review Board and patient informed consent was obtained.
    Results: Assessment was done on an external test set of 37 females (mean age, 51.31 years ± 11.07 [SD]) with AUC-ROC for AI performance 0.936; (95 % CI: 0.898, 0.973; p < 0.001) and the best cut off value for prediction of malignancy using AI score = 0.28. Findings were then correlated with histopathological results and follow up which revealed a sensitivity of 75 %, specificity 96.3 %, total accuracy of 90.1 %, positive predictive value (PPV) 87.1 %, and negative predictive value (NPV) 92 %, p-value (<0.001). Diagnostic indices of radiologists were sensitivity 88.9 %, specificity 92.6 %, total accuracy 91.7 %, PPV 80 %, and NPV 96.2 %, p-value (<0.001).
    Conclusion: A deep learning multiview CEM model was developed and evaluated in a cohort of female participants and showed promising results in detecting breast cancer. This warrants further studies, external training, and validation.
    MeSH term(s) Female ; Humans ; Middle Aged ; Breast Neoplasms/pathology ; Artificial Intelligence ; Sensitivity and Specificity ; Mammography/methods ; Breast/diagnostic imaging ; Retrospective Studies
    Language English
    Publishing date 2024-02-23
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 138815-0
    ISSN 1872-7727 ; 0720-048X
    ISSN (online) 1872-7727
    ISSN 0720-048X
    DOI 10.1016/j.ejrad.2024.111392
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online: Zero-Resource Multi-Dialectal Arabic Natural Language Understanding

    Khalifa, Muhammad / Hassan, Hesham / Fahmy, Aly

    2021  

    Abstract: A reasonable amount of annotated data is required for fine-tuning pre-trained language models (PLM) on downstream tasks. However, obtaining labeled examples for different language varieties can be costly. In this paper, we investigate the zero-shot ... ...

    Abstract A reasonable amount of annotated data is required for fine-tuning pre-trained language models (PLM) on downstream tasks. However, obtaining labeled examples for different language varieties can be costly. In this paper, we investigate the zero-shot performance on Dialectal Arabic (DA) when fine-tuning a PLM on modern standard Arabic (MSA) data only -- identifying a significant performance drop when evaluating such models on DA. To remedy such performance drop, we propose self-training with unlabeled DA data and apply it in the context of named entity recognition (NER), part-of-speech (POS) tagging, and sarcasm detection (SRD) on several DA varieties. Our results demonstrate the effectiveness of self-training with unlabeled DA data: improving zero-shot MSA-to-DA transfer by as large as $\sim$10\% F$_1$ (NER), 2\% accuracy (POS tagging), and 4.5\% F$_1$ (SRD). We conduct an ablation experiment and show that the performance boost observed directly results from the unlabeled DA examples used for self-training. Our work opens up opportunities for leveraging the relatively abundant labeled MSA datasets to develop DA models for zero and low-resource dialects. We also report new state-of-the-art performance on all three tasks and open-source our fine-tuned models for the research community.

    Comment: arXiv admin note: substantial text overlap with arXiv:2101.04758
    Keywords Computer Science - Computation and Language
    Subject code 006
    Publishing date 2021-04-13
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Categorized contrast enhanced mammography dataset for diagnostic and artificial intelligence research.

    Khaled, Rana / Helal, Maha / Alfarghaly, Omar / Mokhtar, Omnia / Elkorany, Abeer / El Kassas, Hebatalla / Fahmy, Aly

    Scientific data

    2022  Volume 9, Issue 1, Page(s) 122

    Abstract: Contrast-enhanced spectral mammography (CESM) is a relatively recent imaging modality with increased diagnostic accuracy compared to digital mammography (DM). New deep learning (DL) models were developed that have accuracies equal to that of an average ... ...

    Abstract Contrast-enhanced spectral mammography (CESM) is a relatively recent imaging modality with increased diagnostic accuracy compared to digital mammography (DM). New deep learning (DL) models were developed that have accuracies equal to that of an average radiologist. However, most studies trained the DL models on DM images as no datasets exist for CESM images. We aim to resolve this limitation by releasing a Categorized Digital Database for Low energy and Subtracted Contrast Enhanced Spectral Mammography images (CDD-CESM) to evaluate decision support systems. The dataset includes 2006 images, with an average resolution of 2355 × 1315, consisting of 310 mass images, 48 architectural distortion images, 222 asymmetry images, 238 calcifications images, 334 mass enhancement images, 184 non-mass enhancement images, 159 postoperative images, 8 post neoadjuvant chemotherapy images, and 751 normal images, with 248 images having more than one finding. This is the first dataset to incorporate data selection, segmentation annotation, medical reports, and pathological diagnosis for all cases. Moreover, we propose and evaluate a DL-based technique to automatically segment abnormal findings in images.
    MeSH term(s) Artificial Intelligence ; Breast Diseases/diagnostic imaging ; Databases, Factual ; Diffusion Magnetic Resonance Imaging ; Female ; Humans ; Mammography ; Sensitivity and Specificity
    Language English
    Publishing date 2022-03-30
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-022-01238-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Dataset of breast ultrasound images.

    Al-Dhabyani, Walid / Gomaa, Mohammed / Khaled, Hussien / Fahmy, Aly

    Data in brief

    2019  Volume 28, Page(s) 104863

    Abstract: Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of early deaths. The data presented in this article reviews the medical images of breast cancer using ultrasound scan. Breast ... ...

    Abstract Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of early deaths. The data presented in this article reviews the medical images of breast cancer using ultrasound scan. Breast Ultrasound Dataset is categorized into three classes: normal, benign, and malignant images. Breast ultrasound images can produce great results in classification, detection, and segmentation of breast cancer when combined with machine learning.
    Language English
    Publishing date 2019-11-21
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2019.104863
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Dataset of breast ultrasound images

    Al-Dhabyani, Walid / Gomaa, Mohammed / Khaled, Hussien / Fahmy, Aly

    Data in Brief. 2020 Feb., v. 28

    2020  

    Abstract: Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of early deaths. The data presented in this article reviews the medical images of breast cancer using ultrasound scan. Breast ... ...

    Abstract Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of early deaths. The data presented in this article reviews the medical images of breast cancer using ultrasound scan. Breast Ultrasound Dataset is categorized into three classes: normal, benign, and malignant images. Breast ultrasound images can produce great results in classification, detection, and segmentation of breast cancer when combined with machine learning.
    Keywords breast neoplasms ; breasts ; data collection ; death ; ultrasonics
    Language English
    Dates of publication 2020-02
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 2786545-9
    ISSN 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2019.104863
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Histological Grading of Urinary Bladder Tumours

    Fahmy, Aly

    Urologia Internationalis

    1963  Volume 15, Issue 6, Page(s) 358–377

    Language English
    Publisher S. Karger AG
    Publishing place Basel
    Publishing country Switzerland
    Document type Article ; Online
    ZDB-ID 204045-1
    ISSN 1423-0399 ; 0042-1138 ; 0042-1138
    ISSN (online) 1423-0399
    ISSN 0042-1138
    DOI 10.1159/000279028
    Database Karger publisher's database

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