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  1. Article: Reduced tree density and basal area in Andean forests are associated with bamboo dominance

    Fadrique, Belen / Santos-Andrade, Paul / Farfan-Rios, William / Salinas, Norma / Silman, Miles / Feeley, Kenneth J

    Forest ecology and management. 2021 Jan. 15, v. 480

    2021  

    Abstract: Forest structure and composition play an essential role in determining the carbon storage capacity of tropical forests. Andean forests, with great potential for carbon accumulation, include large expanses of high-density woody bamboo communities. Woody ... ...

    Abstract Forest structure and composition play an essential role in determining the carbon storage capacity of tropical forests. Andean forests, with great potential for carbon accumulation, include large expanses of high-density woody bamboo communities. Woody bamboos can potentially alter forest structure, composition and dynamics and thus can affect carbon storage capacity; however, they are commonly excluded from forest monitoring and modelling. With the aim of documenting patterns of bamboo abundance and disentangling its association with forest structure, we carried out a bamboo census in seven 1-ha long-term forest monitoring plots situated across a large elevation gradient (1000–3600 m a.s.l.) in the Peruvian Andes. We determined that bamboo is a dominant plant group in the study area. In every plot, bamboos were the most common genera in terms of number of stems, and in two of the plots bamboo species were among those with the greatest basal area. We used a combination of Generalized linear mixed models (GLMM) and structural equation modelling (SEM) to hypothesize a causal framework and determine the direction and size of the effects of bamboo abundance (basal area) on number of individual trees, total tree basal area, mean tree basal area, mean tree growth rate and tree mortality rate. We found an overall negative association between bamboo abundance and total tree basal area driven mainly by reduced tree density (directly and indirectly mediated by an increase in tree mortality). However, the decrease in tree density and the increase in tree mortality are also associated with a small increase in tree diameter (mean tree basal area). Overall, the negative association between bamboo abundance and tree basal area suggests a lower biomass accumulation and thus a lower carbon storage capacity of trees in Andean forests where bamboo is dominant. Our results, which show the importance of bamboo in determining forest function, highlight the need for including bamboo in monitoring efforts and modeling studies.
    Keywords administrative management ; altitude ; bamboos ; biomass production ; carbon ; carbon sequestration ; equations ; forest ecology ; mortality ; tree and stand measurements ; tree growth ; tree mortality ; trees ; Andes region
    Language English
    Dates of publication 2021-0115
    Publishing place Elsevier B.V.
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 751138-3
    ISSN 0378-1127
    ISSN 0378-1127
    DOI 10.1016/j.foreco.2020.118648
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Incadendron

    Wurdack, Kenneth J / Farfan-Rios, William

    PhytoKeys

    2017  , Issue 85, Page(s) 69–86

    Abstract: Incadendron ... ...

    Abstract Incadendron esseri
    Language English
    Publishing date 2017-08-31
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2579891-1
    ISSN 1314-2003 ; 1314-2011
    ISSN (online) 1314-2003
    ISSN 1314-2011
    DOI 10.3897/phytokeys.85.14757
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Book ; Online: Data from

    van der Sande, Masha / Bush, Mark B. / Urrego, Dunia H. / Silman, Miles R. / Farfan-Rios, William / Garcia-Cabrera, Karina / Shenkin, Alexander / Malhi, Yadvinder / McMichael, Crystal H. / Gosling, William

    Modern pollen rain predicts shifts in plant trait composition but not plant diversity along the Andes-Amazon elevational gradient

    2023  

    Abstract: We used 82 modern pollen samples and 59 vegetation plots along the elevation gradient, and calculated CWM traits and diversity indices for each pollen sample and vegetation plot. We also quantified the degree to which taxa are over- or underrepresented ... ...

    Abstract We used 82 modern pollen samples and 59 vegetation plots along the elevation gradient, and calculated CWM traits and diversity indices for each pollen sample and vegetation plot. We also quantified the degree to which taxa are over- or underrepresented by their pollen, by dividing the relative pollen abundance by the relative basal area abundance in the nearby vegetation survey plots (i.e. the R-rel values).
    Keywords R-rel values ; diversity ; elevation ; functional traits ; pollen ; richness ; taphonomy ; tropical Andes ; tropical forest
    Publisher Wageningen University & Research
    Publishing country nl
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article: Modern pollen rain predicts shifts in plant trait composition but not plant diversity along the Andes–Amazon elevational gradient

    van der Sande, Masha T / Bush, Mark B / Urrego, Dunia H / Silman, Miles / Farfan‐Rios, William / García Cabrera, Karina / Shenkin, Alexander / Malhi, Yadvinder / McMichael, Crystal H / Gosling, William

    Journal of vegetation science. 2021 Jan., v. 32, no. 1

    2021  

    Abstract: AIMS: Terrestrial ecosystems are changing in biodiversity, species composition and functional trait composition. To understand the underlying causes of these changes and predict the long‐term resilience of the ecosystem to withstand future disturbances, ... ...

    Abstract AIMS: Terrestrial ecosystems are changing in biodiversity, species composition and functional trait composition. To understand the underlying causes of these changes and predict the long‐term resilience of the ecosystem to withstand future disturbances, we can evaluate changes in diversity and composition from fossil pollen records. Although diversity can be well estimated from pollen in temperate ecosystems, this is less clear for the hyperdiverse tropics. Moreover, it remains unknown whether functional composition of plant assemblages can be accurately predicted from pollen assemblage composition. Here, we evaluate how community‐weighted mean (CWM) traits and diversity indices change along elevation. LOCATION: Amazon–Andes elevation gradient in Peru. METHODS: We used 82 modern pollen samples and 59 vegetation plots along the elevation gradient, and calculated CWM traits and diversity indices for each pollen sample and vegetation plot. We also quantified the degree to which taxa are over‐ or underrepresented by their pollen, by dividing the relative pollen abundance by the relative basal area abundance in the nearby vegetation survey plots (i.e. the R‐rel values). RESULTS: We found that CWM wood density increased, and CWM adult height and leaf area decreased with elevation. This change was well predicted by pollen assemblages, indicating that CWM trait–environment relationships based on pollen abundance data provide meaningful results. Diversity (richness, Shannon and Simpson) decreased with elevation for vegetation plots, but these trends could not be observed from pollen assemblages. CONCLUSIONS: Our results demonstrate that more research is needed to develop methods that lead to accurate diversity estimates from pollen data in these tropical ecosystems, but that CWM traits can be calculated from pollen data to assess spatial shifts in functional composition. This opens opportunities to calculate CWM traits from fossil pollen data sets in the tropics, with broad implications for improving our understanding and predictions of forest dynamics, functioning and resilience through time.
    Keywords adults ; altitude ; forest dynamics ; leaf area ; palynology ; pollen ; pollen rain ; pollen sampling ; species diversity ; surveys ; vegetation ; wood density ; Peru
    Language English
    Dates of publication 2021-01
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note NAL-AP-2-clean ; JOURNAL ARTICLE
    ZDB-ID 1053769-7
    ISSN 1100-9233
    ISSN 1100-9233
    DOI 10.1111/jvs.12925
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Peru's zoning amendment endangers forests.

    Martel, Carlos / Mendieta-Leiva, Glenda / Alvarez-Loayza, Patricia C / Cano, Asunción / Cosio, Eric G / Decock, Cony / Farfan-Rios, William / Feeley, Kenneth / Honorio Coronado, Eurídice / Huamantupa, Isau / Ibañez, Alfredo J / Koepcke de Diller, Juliane / León, Blanca / Linares-Palomino, Reynaldo / Marcelo Peña, José L / Millán, Betty / Moat, Justin F / Pennington, R Toby / Pitman, Nigel /
    Salinas, Norma / Rojas-VeraPinto, Roxana / Stevenson, Philip C / Tovar, Carolina / Whaley, Oliver Q / Young, Kenneth R

    Science (New York, N.Y.)

    2024  Volume 383, Issue 6686, Page(s) 957

    MeSH term(s) Forests ; Peru ; Endangered Species
    Language English
    Publishing date 2024-02-29
    Publishing country United States
    Document type Letter
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.ado0050
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Ancient human disturbances may be skewing our understanding of Amazonian forests.

    McMichael, Crystal N H / Matthews-Bird, Frazer / Farfan-Rios, William / Feeley, Kenneth J

    Proceedings of the National Academy of Sciences of the United States of America

    2017  Volume 114, Issue 3, Page(s) 522–527

    Abstract: Although the Amazon rainforest houses much of Earth's biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived ... ...

    Abstract Although the Amazon rainforest houses much of Earth's biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived from fewer than 200 recensus plots. It is well documented that the pre-European inhabitants of Amazonia actively transformed and modified the forest in many regions before their population collapse around 1491 AD; however, the impacts of these ancient disturbances remain entirely unaccounted for in the many highly influential studies using Amazonian forest plots. Here we examine whether Amazonian forest inventory plot locations are spatially biased toward areas with high probability of ancient human impacts. Our analyses reveal that forest inventory plots, and especially forest recensus plots, in all regions of Amazonia are located disproportionately near archaeological evidence and in areas likely to have ancient human impacts. Furthermore, regions of the Amazon that are relatively oversampled with inventory plots also contain the highest values of predicted ancient human impacts. Given the long lifespan of Amazonian trees, many forest inventory and recensus sites may still be recovering from past disturbances, potentially skewing our interpretations of forest dynamics and our understanding of how these forests are responding to global change. Empirical data on the human history of forest inventory sites are crucial for determining how past disturbances affect modern patterns of forest composition and carbon flux in Amazonian forests.
    Language English
    Publishing date 2017-01-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1614577114
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: From a crisis to an opportunity: Eight insights for doing science in the COVID-19 era and beyond.

    Chacón-Labella, Julia / Boakye, Mickey / Enquist, Brian J / Farfan-Rios, William / Gya, Ragnhild / Halbritter, Aud H / Middleton, Sara L / von Oppen, Jonathan / Pastor-Ploskonka, Samuel / Strydom, Tanya / Vandvik, Vigdis / Geange, Sonya R

    Ecology and evolution

    2020  Volume 11, Issue 8, Page(s) 3588–3596

    Abstract: The COVID-19 crisis has forced researchers in Ecology to change the way we work almost overnight. Nonetheless, the pandemic has provided us with several novel components for a new way of conducting science. In this perspective piece, we summarize eight ... ...

    Abstract The COVID-19 crisis has forced researchers in Ecology to change the way we work almost overnight. Nonetheless, the pandemic has provided us with several novel components for a new way of conducting science. In this perspective piece, we summarize eight central insights that are helping us, as early career researchers, navigate the uncertainties, fears, and challenges of advancing science during the COVID-19 pandemic. We highlight how innovative, collaborative, and often Open Science-driven developments that have arisen from this crisis can form a blueprint for a community reinvention in academia. Our insights include personal approaches to managing our new reality, maintaining capacity to focus and resilience in our projects, and a variety of tools that facilitate remote collaboration. We also highlight how, at a community level, we can take advantage of online communication platforms for gaining accessibility to conferences and meetings, and for maintaining research networks and community engagement while promoting a more diverse and inclusive community. Overall, we are confident that these practices can support a more inclusive and kinder scientific culture for the longer term.
    Language English
    Publishing date 2020-12-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 2635675-2
    ISSN 2045-7758
    ISSN 2045-7758
    DOI 10.1002/ece3.7026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Modern pollen rain predicts shifts in plant trait composition but not plant diversity along the Andes–Amazon elevational gradient

    van der Sande, Masha T. / Bush, Mark B. / Urrego, Dunia H. / Silman, Miles / Farfan-Rios, William / García Cabrera, Karina / Shenkin, Alexander / Malhi, Yadvinder / McMichael, Crystal H. / Gosling, William

    Journal of Vegetation Science

    2021  Volume 32, Issue 1

    Abstract: Aims: Terrestrial ecosystems are changing in biodiversity, species composition and functional trait composition. To understand the underlying causes of these changes and predict the long-term resilience of the ecosystem to withstand future disturbances, ... ...

    Abstract Aims: Terrestrial ecosystems are changing in biodiversity, species composition and functional trait composition. To understand the underlying causes of these changes and predict the long-term resilience of the ecosystem to withstand future disturbances, we can evaluate changes in diversity and composition from fossil pollen records. Although diversity can be well estimated from pollen in temperate ecosystems, this is less clear for the hyperdiverse tropics. Moreover, it remains unknown whether functional composition of plant assemblages can be accurately predicted from pollen assemblage composition. Here, we evaluate how community-weighted mean (CWM) traits and diversity indices change along elevation. Location: Amazon–Andes elevation gradient in Peru. Methods: We used 82 modern pollen samples and 59 vegetation plots along the elevation gradient, and calculated CWM traits and diversity indices for each pollen sample and vegetation plot. We also quantified the degree to which taxa are over- or underrepresented by their pollen, by dividing the relative pollen abundance by the relative basal area abundance in the nearby vegetation survey plots (i.e. the R-rel values). Results: We found that CWM wood density increased, and CWM adult height and leaf area decreased with elevation. This change was well predicted by pollen assemblages, indicating that CWM trait–environment relationships based on pollen abundance data provide meaningful results. Diversity (richness, Shannon and Simpson) decreased with elevation for vegetation plots, but these trends could not be observed from pollen assemblages. Conclusions: Our results demonstrate that more research is needed to develop methods that lead to accurate diversity estimates from pollen data in these tropical ecosystems, but that CWM traits can be calculated from pollen data to assess spatial shifts in functional composition. This opens opportunities to calculate CWM traits from fossil pollen data sets in the tropics, with broad implications for improving our understanding ...
    Keywords R-rel values ; diversity ; elevation ; functional traits ; pollen ; richness ; taphonomy ; tropical Andes ; tropical forest
    Subject code 333
    Language English
    Publishing country nl
    Document type Article ; Online
    ZDB-ID 1053769-7
    ISSN 1100-9233
    ISSN 1100-9233
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: The evolutionary assembly of forest communities along environmental gradients: recent diversification or sorting of pre‐adapted clades?

    Linan, Alexander G. / Myers, Jonathan A. / Edwards, Christine E. / Zanne, Amy E. / Smith, Stephen A. / Arellano, Gabriel / Cayola, Leslie / Farfan‐Ríos, William / Fuentes, Alfredo F. / García‐Cabrera, Karina / González‐Caro, Sebastián / Loza, M. Isabel / Macía, Manuel J. / Malhi, Yadvinder / Nieto‐Ariza, Beatriz / Salinas, Norma / Silman, Miles / Tello, J. Sebastián

    The new phytologist. 2021 Dec., v. 232, no. 6

    2021  

    Abstract: Recent studies have demonstrated that ecological processes that shape community structure and dynamics change along environmental gradients. However, much less is known about how the emergence of the gradients themselves shape the evolution of species ... ...

    Abstract Recent studies have demonstrated that ecological processes that shape community structure and dynamics change along environmental gradients. However, much less is known about how the emergence of the gradients themselves shape the evolution of species that underlie community assembly. In this study, we address how the creation of novel environments leads to community assembly via two nonmutually exclusive processes: immigration and ecological sorting of pre‐adapted clades (ISPC), and recent adaptive diversification (RAD). We study these processes in the context of the elevational gradient created by the uplift of the Central Andes. We develop a novel approach and method based on the decomposition of species turnover into within‐ and among‐clade components, where clades correspond to lineages that originated before mountain uplift. Effects of ISPC and RAD can be inferred from how components of turnover change with elevation. We test our approach using data from over 500 Andean forest plots. We found that species turnover between communities at different elevations is dominated by the replacement of clades that originated before the uplift of the Central Andes. Our results suggest that immigration and sorting of clades pre‐adapted to montane habitats is the primary mechanism shaping tree communities across elevations.
    Keywords community structure ; evolution ; forests ; immigration ; trees ; Andes region
    Language English
    Dates of publication 2021-12
    Size p. 2506-2519.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 208885-x
    ISSN 1469-8137 ; 0028-646X
    ISSN (online) 1469-8137
    ISSN 0028-646X
    DOI 10.1111/nph.17674
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Bryophyte stable isotope composition, diversity and biomass define tropical montane cloud forest extent.

    Horwath, Aline B / Royles, Jessica / Tito, Richard / Gudiño, José A / Salazar Allen, Noris / Farfan-Rios, William / Rapp, Joshua M / Silman, Miles R / Malhi, Yadvinder / Swamy, Varun / Latorre Farfan, Jean Paul / Griffiths, Howard

    Proceedings. Biological sciences

    2019  Volume 286, Issue 1895, Page(s) 20182284

    Abstract: Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecosystems. Canopy access was used to analyse the distribution and vertical stratification of bryophyte epiphytes within tree crowns at nine forest sites across ... ...

    Abstract Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecosystems. Canopy access was used to analyse the distribution and vertical stratification of bryophyte epiphytes within tree crowns at nine forest sites across a 3400 m elevational gradient in Peru, from the Amazonian basin to the high Andes. The stable isotope compositions of bryophyte organic material (
    MeSH term(s) Altitude ; Biodiversity ; Biomass ; Bryophyta/chemistry ; Carbon Isotopes/analysis ; Forests ; Oxygen Isotopes/analysis ; Peru
    Chemical Substances Carbon Isotopes ; Oxygen Isotopes ; Oxygen-18 ; Carbon-13 (FDJ0A8596D)
    Language English
    Publishing date 2019-04-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 209242-6
    ISSN 1471-2954 ; 0080-4649 ; 0962-8452 ; 0950-1193
    ISSN (online) 1471-2954
    ISSN 0080-4649 ; 0962-8452 ; 0950-1193
    DOI 10.1098/rspb.2018.2284
    Database MEDical Literature Analysis and Retrieval System OnLINE

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