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Article ; Online: MicroRNA Transcriptome Profiling in Heart of Trypanosoma cruzi-Infected Mice.

Methods in molecular biology (Clifton, N.J.)

2019 Volume 1955, Page(s) 203–214

Abstract: MicroRNAs (miRNAs) are a class of small noncoding RNAs (typically 19-23 nucleotides) which act by annealing to partially complementary binding sites present on the 3' untranslated regions (UTR) of messenger RNAs (mRNAs) leading to inhibition of protein ... ...

Abstract	MicroRNAs (miRNAs) are a class of small noncoding RNAs (typically 19-23 nucleotides) which act by annealing to partially complementary binding sites present on the 3' untranslated regions (UTR) of messenger RNAs (mRNAs) leading to inhibition of protein translation or by inducing mRNA decay. Since their discovery, miRNAs have come to be recognized as master regulators of gene expression in plant and mammals, controlling tissue-specific protein expression. Up to one-third of mammalian mRNAs are susceptible to miRNA-mediated regulation. It has been shown that miRNAs are determinants of the physiology and pathophysiology of the cardiovascular system, and altered expression of muscle- and/or cardiac-specific miRNAs in myocardial tissue is involved in heart development and cardiovascular diseases, including myocardial hypertrophy, heart failure, and fibrosis. The analysis of miRNA expression pattern provides important information, as well as is a starting point to understand miRNA function in different tissues, during development, and in disease. Several techniques can be used for miRNA profiling analysis like high-throughput sequencing, microarrays, and real-time PCR using microfluidic low-density arrays. This chapter describes the complete methodology to perform miRNA profiling using the stem-loop reverse-transcription (RT)-based TaqMan
MeSH term(s)	Animals ; Chagas Disease/genetics ; Chagas Disease/parasitology ; Female ; Gene Expression Profiling/methods ; Heart/parasitology ; High-Throughput Nucleotide Sequencing/methods ; Host-Parasite Interactions ; Mice ; Mice, Inbred C57BL ; MicroRNAs/genetics ; Myocardium/metabolism ; Oligonucleotide Array Sequence Analysis/methods ; Real-Time Polymerase Chain Reaction/methods ; Transcriptome ; Trypanosoma cruzi/isolation & purification ; Trypanosoma cruzi/physiology
Chemical Substances	MicroRNAs
Language	English
Publishing date	2019-03-12
Publishing country	United States
Document type	Journal Article
ISSN	1940-6029
ISSN (online)	1940-6029
DOI	10.1007/978-1-4939-9148-8_15
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Article: A Major Downregulation of Circulating microRNAs in Zika Acutely Infected Patients: Potential Implications in Innate and Adaptive Immune Response Signaling Pathways.

Carvalho-Silva, Ana Carolina / Da Silva Junior, Almir Ribeiro / Rigaud, Vagner Oliveira-Carvalho / Martins, Waleska Kerllen / Coelho, Verônica / Pfrimer, Irmtraut Araci Hoffmann / Kalil, Jorge / Fonseca, Simone Gonçalves / Cunha-Neto, Edecio / Ferreira, Ludmila Rodrigues Pinto

Frontiers in genetics

2022 Volume 13, Page(s) 857728

Abstract: Zika virus (ZIKV) is an arbovirus mainly transmitted by mosquitos of the ... ...

Abstract	Zika virus (ZIKV) is an arbovirus mainly transmitted by mosquitos of the genus
Language	English
Publishing date	2022-06-01
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2606823-0
ISSN	1664-8021
ISSN	1664-8021
DOI	10.3389/fgene.2022.857728
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Article ; Online: Progression of Type 1 Diabetes: Circulating MicroRNA Expression Profiles Changes from Preclinical to Overt Disease.

Santos, Aritania Sousa / Ferreira, Ludmila Rodrigues Pinto / da Silva, Amanda Cabral / Alves, Laís Isidoro / Damasceno, Jullian Gabriel / Kulikowski, Leslie / Cunha-Neto, Edecio / da Silva, Maria Elizabeth Rossi

Journal of immunology research

2022 Volume 2022, Page(s) 2734490

Abstract: Objectives: To evaluate the potential biological involvement of miRNA expression in the immune response and beta cell function in T1D.: Methods: We screened 377 serum miRNAs of 110 subjects divided into four groups: healthy individuals (control group) ...

Abstract	Objectives: To evaluate the potential biological involvement of miRNA expression in the immune response and beta cell function in T1D. Methods: We screened 377 serum miRNAs of 110 subjects divided into four groups: healthy individuals (control group) and patients at different stages of T1D progression, from the initial immunological manifestation presenting islet autoantibodies (AbP group) until partial and strong beta cell damage in the recent (recent T1D group) and long-term T1D, with 2 to 5 years of disease (T1D 2-5y group). Results: The results revealed 69 differentially expressed miRNAs (DEMs) in relation to controls. Several miRNAs were correlated with islet autoantibodies (IA2A, GADA, and Znt8A), age, and C-peptide levels, mainly from AbP, and recent T1D groups pointing these miRNAs as relevant to T1D pathogenesis and progression. Several miRNAs were related to metabolic derangements, inflammatory pathways, and several other autoimmune diseases. Pathway analysis of putative DEM targets revealed an enrichment in pathways related to metabolic syndrome, inflammatory response, apoptosis and insulin signaling pathways, metabolic derangements, and decreased immunomodulation. One of the miRNAs' gene targets was DYRK2 (dual-specificity tyrosine-phosphorylation-regulated kinase 2), which is an autoantigen targeted by an antibody in T1D. ROC curve analysis showed hsa-miR-16 and hsa-miR-200a-3p with AUCs greater than for glucose levels, with discriminating power for T1D prediction greater than glucose levels.
MeSH term(s)	Autoantibodies ; Circulating MicroRNA/genetics ; Diabetes Mellitus, Type 1 ; Glucose ; Humans ; MicroRNAs
Chemical Substances	Autoantibodies ; Circulating MicroRNA ; MicroRNAs ; Glucose (IY9XDZ35W2)
Language	English
Publishing date	2022-07-19
Publishing country	Egypt
Document type	Journal Article
ZDB-ID	2817541-4
ISSN	2314-7156 ; 2314-7156
ISSN (online)	2314-7156
ISSN	2314-7156
DOI	10.1155/2022/2734490
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Article ; Online: Matrix Metalloproteinase 2 and 9 Enzymatic Activities are Selectively Increased in the Myocardium of Chronic Chagas Disease Cardiomyopathy Patients: Role of TIMPs.

Baron, Monique Andrade / Ferreira, Ludmila Rodrigues Pinto / Teixeira, Priscila Camillo / Moretti, Ana Iochabel Soares / Santos, Ronaldo Honorato Barros / Frade, Amanda Farage / Kuramoto, Andréia / Debbas, Victor / Benvenuti, Luiz Alberto / Gaiotto, Fabio Antônio / Bacal, Fernando / Pomerantzeff, Pablo / Chevillard, Christophe / Kalil, Jorge / Cunha-Neto, Edecio

Frontiers in cellular and infection microbiology

2022 Volume 12, Page(s) 836242

Abstract: Chronic Chagas disease (CCC) is an inflammatory dilated cardiomyopathy with a worse prognosis compared to other cardiomyopathies. We show the expression and activity of Matrix Metalloproteinases (MMP) and of their inhibitors TIMP (tissue inhibitor of ... ...

Abstract	Chronic Chagas disease (CCC) is an inflammatory dilated cardiomyopathy with a worse prognosis compared to other cardiomyopathies. We show the expression and activity of Matrix Metalloproteinases (MMP) and of their inhibitors TIMP (tissue inhibitor of metalloproteinases) in myocardial samples of end stage CCC, idiopathic dilated cardiomyopathy (DCM) patients, and from organ donors. Our results showed significantly increased mRNA expression of several MMPs, several TIMPs and EMMPRIN in CCC and DCM samples. MMP-2 and TIMP-2 protein levels were significantly elevated in both sample groups, while MMP-9 protein level was exclusively increased in CCC. MMPs 2 and 9 activities were also exclusively increased in CCC. Results suggest that the balance between proteins that inhibit the MMP-2 and 9 is shifted toward their activation. Inflammation-induced increases in MMP-2 and 9 activity and expression associated with imbalanced TIMP regulation could be related to a more extensive heart remodeling and poorer prognosis in CCC patients.
MeSH term(s)	Cardiomyopathy, Dilated/metabolism ; Chagas Cardiomyopathy ; Humans ; Matrix Metalloproteinase 2/genetics ; Matrix Metalloproteinase 2/metabolism ; Matrix Metalloproteinase 9/genetics ; Matrix Metalloproteinase 9/metabolism ; Myocardium
Chemical Substances	MMP2 protein, human (EC 3.4.24.24) ; Matrix Metalloproteinase 2 (EC 3.4.24.24) ; MMP9 protein, human (EC 3.4.24.35) ; Matrix Metalloproteinase 9 (EC 3.4.24.35)
Language	English
Publishing date	2022-03-17
Publishing country	Switzerland
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2619676-1
ISSN	2235-2988 ; 2235-2988
ISSN (online)	2235-2988
ISSN	2235-2988
DOI	10.3389/fcimb.2022.836242
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Article ; Online: Circulating mir-208a fails as a biomarker of doxorubicin-induced cardiotoxicity in breast cancer patients.

Oliveira-Carvalho, Vagner / Ferreira, Ludmila Rodrigues Pinto / Bocchi, Edimar Alcides

Journal of applied toxicology : JAT

2015 Volume 35, Issue 9, Page(s) 1071–1072

MeSH term(s)	Antibiotics, Antineoplastic/therapeutic use ; Antibiotics, Antineoplastic/toxicity ; Biomarkers/blood ; Breast Neoplasms/blood ; Breast Neoplasms/drug therapy ; Cardiotoxicity/blood ; Doxorubicin/therapeutic use ; Doxorubicin/toxicity ; Female ; Humans ; MicroRNAs/blood ; Myocardium/metabolism ; Sensitivity and Specificity ; Troponin I/blood
Chemical Substances	Antibiotics, Antineoplastic ; Biomarkers ; MIRN208 microRNA, human ; MicroRNAs ; Troponin I ; Doxorubicin (80168379AG)
Language	English
Publishing date	2015-09
Publishing country	England
Document type	Letter
ZDB-ID	604625-3
ISSN	1099-1263 ; 0260-437X
ISSN (online)	1099-1263
ISSN	0260-437X
DOI	10.1002/jat.3185
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Zs.A 1661: Show issues

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Article ; Online: Blood orange juice intake modulates plasma and PBMC microRNA expression in overweight and insulin-resistant women: impact on MAPK and NFκB signaling pathways.

Capetini, Vinícius Cooper / Quintanilha, Bruna J / de Oliveira, Dalila Cunha / Nishioka, Alessandra Harumi / de Matos, Luciene Assaf / Ferreira, Ludmila Rodrigues Pinto / Ferreira, Frederico Moraes / Sampaio, Geni Rodrigues / Hassimotto, Neuza Mariko Aymoto / Lajolo, Franco Maria / Fock, Ricardo Ambrósio / Rogero, Marcelo Macedo

The Journal of nutritional biochemistry

2022 Volume 112, Page(s) 109240

Abstract: Blood orange consumption presents potential health benefits and may modulate epigenetic mechanisms such as microRNAs (miRNAs) expression. MiRNAs are non-coding RNAs responsible for post-transcriptional gene regulation, and these molecules can also be ... ...

Abstract	Blood orange consumption presents potential health benefits and may modulate epigenetic mechanisms such as microRNAs (miRNAs) expression. MiRNAs are non-coding RNAs responsible for post-transcriptional gene regulation, and these molecules can also be used as biomarkers in body fluids. This study was designed to investigate the effect of chronic blood orange juice (BOJ) intake on the inflammatory response and miRNA expression profile in plasma and blood cells in overweight women. The study cohort was comprised of twenty women aged 18-40 years old, diagnosed as overweight, who consumed 500 mL/d of BOJ for four weeks. Clinical data were collected at baseline and after 4 weeks of juice consumption, e.g., anthropometric and hemodynamic parameters, food intake, blood cell count, and metabolic and inflammatory biomarkers. BOJ samples were analyzed and characterized. Additionally, plasma and blood cells were also collected for miRNA expression profiling and evaluation of the expression of genes and proteins in the MAPK and NFκB signaling pathways. BOJ intake increased the expression of miR-144-3p in plasma and the expression of miR-424-5p, miR-144-3p, and miR-130b-3p in peripheral blood mononuclear cells (PBMC). Conversely, the beverage intake decreased the expression of let-7f-5p and miR-126-3p in PBMC. Computational analyses identified different targets of the dysregulated miRNA on inflammatory pathways. Furthermore, BOJ intake increased vitamin C consumption and the pJNK/JNK ratio and decreased the expression of IL6 mRNA and NFκB protein. These results demonstrate that BOJ regulates the expression of genes involved in the inflammatory process and decreases NFкB-protein expression in PBMC.
MeSH term(s)	Adolescent ; Adult ; Female ; Humans ; Young Adult ; Biomarkers ; Citrus sinensis ; Gene Expression Profiling ; Leukocytes, Mononuclear/metabolism ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Overweight/genetics ; Overweight/metabolism ; Signal Transduction ; Fruit and Vegetable Juices ; MAP Kinase Signaling System ; Insulin Resistance/genetics ; Insulin Resistance/physiology ; NF-kappa B
Chemical Substances	Biomarkers ; MicroRNAs ; NF-kappa B
Language	English
Publishing date	2022-11-26
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	1014929-6
ISSN	1873-4847 ; 0955-2863
ISSN (online)	1873-4847
ISSN	0955-2863
DOI	10.1016/j.jnutbio.2022.109240
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Zs.A 2838: Show issues

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Article ; Online: Cardiac MicroRNA Expression Profile After Experimental Brain Death Is Associated With Myocardial Dysfunction and Can Be Modulated by Hypertonic Saline.

Ferreira, Ludmila Rodrigues Pinto / Correia, Cristiano Jesus / Zanoni, Fernando Luiz / Carvalho-Silva, Ana Carolina / Zaniratto, Ricardo / da Silva Cândido, Darlan / Almeida, Rafael Ribeiro / Breithaupt-Faloppa, Ana Cristina / Cunha-Neto, Edecio / Moreira, Luiz Felipe P

Transplantation

2021 Volume 106, Issue 2, Page(s) 289–298

Abstract: Background: Brain death (BD) is associated with systemic inflammatory compromise, which might affect the quality of the transplanted organs. This study investigated the expression profile of cardiac microRNAs (miRNAs) after BD, and their relationship ... ...

Abstract	Background: Brain death (BD) is associated with systemic inflammatory compromise, which might affect the quality of the transplanted organs. This study investigated the expression profile of cardiac microRNAs (miRNAs) after BD, and their relationship with the observed decline in myocardial function and with the changes induced by hypertonic saline solution (HSS) treatment. Methods: Wistar rats were assigned to sham-operation (SHAM) or submitted to BD with and without the administration of HSS. Cardiac function was assessed for 6 h with left ventricular (LV) pressure-volume analysis. We screened 641 rodent miRNAs to identify differentially expressed miRNAs in the heart, and computational and functional analyses were performed to compare the differentially expressed miRNAs and find their putative targets and their related enriched canonical pathways. Results: An enhanced expression in canonical pathways related to inflammation and myocardial apoptosis was observed in BD induced group, with 2 miRNAs, miR-30a-3p, and miR-467f, correlating with the level of LV dysfunction observed after BD. Conversely, HSS treated after BD and SHAM groups showed similar enriched pathways related to the maintenance of heart homeostasis regulation, in agreement with the observation that both groups did not have significant changes in LV function. Conclusions: These findings highlight the potential of miRNAs as biomarkers for assessing damage in BD donor hearts and to monitor the changes induced by therapeutic measures like HSS, opening a perspective to improve graft quality and to better understand the pathophysiology of BD. The possible relation of BD-induced miRNA's on early and late cardiac allograft function must be investigated.
MeSH term(s)	Animals ; Brain Death ; Heart Transplantation/adverse effects ; Humans ; MicroRNAs/genetics ; Rats ; Rats, Wistar ; Saline Solution, Hypertonic/pharmacology ; Saline Solution, Hypertonic/therapeutic use ; Tissue Donors
Chemical Substances	MicroRNAs ; Saline Solution, Hypertonic
Language	English
Publishing date	2021-04-15
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	208424-7
ISSN	1534-6080 ; 0041-1337
ISSN (online)	1534-6080
ISSN	0041-1337
DOI	10.1097/TP.0000000000003779
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Zs.A 488: Show issues			Location: Je nach Verfügbarkeit (siehe Angabe bei Bestand) bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular Jg. 1995 - 2021: Lesesall (1.OG) ab Jg. 2022: Lesesaal (EG)
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Article: Brazil nut intake increases circulating miR-454-3p and miR-584-5p in obese women

Reis, Bruna Zavarize / Duarte, Graziela Biude Silva / Vargas-Mendez, Ernesto / Ferreira, Ludmila Rodrigues Pinto / Barbosa, Fernando / Cercato, Cintia / Rogero, Marcelo Macedo / Cozzolino, Silvia Maria Franciscato

Nutrition research. 2019 July, v. 67

2019

Abstract: The Brazil nut is an excellent source of selenium (Se), an essential micronutrient for human health. In this study, we hypothesized that Brazil nut intake modulates circulating microRNAs (miRNAs) in obese women and aimed to evaluate the effects of this ... ...

Abstract	The Brazil nut is an excellent source of selenium (Se), an essential micronutrient for human health. In this study, we hypothesized that Brazil nut intake modulates circulating microRNAs (miRNAs) in obese women and aimed to evaluate the effects of this nut intake on circulating miRNAs in women with obesity or metabolic syndrome (MetS). A randomized controlled clinical trial was conducted on 54 subjects recruited from the Clinical Hospital in São Paulo, Brazil. Patients were randomly assigned to 2 groups: a Brazil nut group (BN group, n = 29) and a control group (CO group, n = 25); both were monitored for 2 months. BN group members were instructed to consume 1 Brazil nut (approximately 1261 μg/Se) per day; CO group members were instructed not to consume any. Biochemical parameters related to Se status and 25 circulating miRNAs in plasma were evaluated in all patients both at baseline and after 2 months. Expression levels of 2 miRNAs (miR-454-3p and miR-584-5p) were significantly increased after Brazil nut intake. To investigate the effect of MetS on circulating miRNAs at baseline, we performed comparisons between women with MetS (n = 23) and women without MetS (others, n = 31). Circulating miR-375 levels were significantly lower (P = .012) in women with MetS. In conclusion, our findings suggested that a daily intake of 1 Brazil nut increased circulating miR-454-3p and miR-584-5p expression levels in obese women, and our network analysis indicated a link between Se intake, vitamin D metabolism, and calcium homeostasis.
Keywords	Brazil nuts ; calcium ; homeostasis ; hospitals ; human health ; metabolic syndrome ; metabolism ; microRNA ; obesity ; patients ; selenium ; vitamin D ; women ; Brazil
Language	English
Dates of publication	2019-07
Size	p. 40-52.
Publishing place	Elsevier Inc.
Document type	Article
ZDB-ID	582432-1
ISSN	1879-0739 ; 0271-5317
ISSN (online)	1879-0739
ISSN	0271-5317
DOI	10.1016/j.nutres.2019.05.004
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Soluble PD-1 and PD-L1 as potential biomarkers for classical Hodgkin lymphoma.

da Silva, Priscilla Brito / Real, Juliana Monte / Ferreira, Ludmila Rodrigues Pinto / Esteves, Gustavo H / Brito, Fabio do Nascimento / Baiocchi, Otavio C G

Hematological oncology

2018 Volume 36, Issue 4, Page(s) 709–712

MeSH term(s)	Adult ; B7-H1 Antigen/blood ; Biomarkers, Tumor/blood ; Female ; Hodgkin Disease/blood ; Hodgkin Disease/pathology ; Hodgkin Disease/therapy ; Humans ; Male ; Neoplasm Proteins/blood ; Programmed Cell Death 1 Receptor/blood
Chemical Substances	B7-H1 Antigen ; Biomarkers, Tumor ; CD274 protein, human ; Neoplasm Proteins ; PDCD1 protein, human ; Programmed Cell Death 1 Receptor
Language	English
Publishing date	2018-08-26
Publishing country	England
Document type	Clinical Trial ; Letter
ZDB-ID	604884-5
ISSN	1099-1069 ; 0278-0232
ISSN (online)	1099-1069
ISSN	0278-0232
DOI	10.1002/hon.2542
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Zs.A 1816: Show issues

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Article ; Online: Comparative Analysis of the Secretome and Interactome of

Watanabe Costa, Renata / Batista, Marina Ferreira / Meneghelli, Isabela / Vidal, Ramon Oliveira / Nájera, Carlos Alcides / Mendes, Ana Clara / Andrade-Lima, Izabela Augusta / da Silveira, José Franco / Lopes, Luciano Rodrigo / Ferreira, Ludmila Rodrigues Pinto / Antoneli, Fernando / Bahia, Diana

Frontiers in immunology

2020 Volume 11, Page(s) 1774

Abstract: Chagas disease, a zoonosis caused by the flagellate ... ...

Abstract	Chagas disease, a zoonosis caused by the flagellate protozoan
MeSH term(s)	Chagas Disease/immunology ; Chagas Disease/metabolism ; Chagas Disease/parasitology ; Computational Biology ; Gene Expression Regulation, Viral ; Gene Regulatory Networks ; Genomics ; Host-Pathogen Interactions ; Humans ; Phylogeny ; Protein Interaction Maps ; Proteome ; Protozoan Proteins/genetics ; Protozoan Proteins/immunology ; Protozoan Proteins/metabolism ; Secretory Pathway ; Signal Transduction ; Trypanosoma cruzi/genetics ; Trypanosoma cruzi/immunology ; Trypanosoma cruzi/metabolism ; Trypanosoma rangeli/genetics ; Trypanosoma rangeli/immunology ; Trypanosoma rangeli/metabolism
Chemical Substances	Proteome ; Protozoan Proteins
Language	English
Publishing date	2020-08-27
Publishing country	Switzerland
Document type	Comparative Study ; Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2606827-8
ISSN	1664-3224 ; 1664-3224
ISSN (online)	1664-3224
ISSN	1664-3224
DOI	10.3389/fimmu.2020.01774
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